BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-8
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
kshv-miR-K12-8-3p MIMAT0002186 Kaposi sarcoma-associated miR-K12... 14 20
ame-miR-9886 MIMAT0037290 Apis mellifera miR-9886 12 80
ggo-miR-524-3p MIMAT0036424 Gorilla gorilla miR-524-3p 12 80
ggo-miR-525-3p MIMAT0036413 Gorilla gorilla miR-525-3p 12 80
efu-miR-337 MIMAT0034928 Eptesicus fuscus miR-337 12 80
ppc-miR-8220-5p MIMAT0032874 Pristionchus pacificus miR-8220-5p 12 80
cel-miR-8194-5p MIMAT0032801 Caenorhabditis elegans miR-8194-5p 12 80
mmu-miR-6546-5p MIMAT0029792 Mus musculus miR-6546-5p 12 80
oan-miR-7425-3p MIMAT0029001 Ornithorhynchus anatinus miR-7425-3p 12 80
hsa-miR-6722-5p MIMAT0025853 Homo sapiens miR-6722-5p 12 80
tca-miR-3887-3p MIMAT0018873 Tribolium castaneum miR-3887-3p 12 80
ppy-miR-566 MIMAT0016010 Pongo pygmaeus miR-566 12 80
ppy-miR-525-3p MIMAT0015983 Pongo pygmaeus miR-525-3p 12 80
ppy-miR-524-3p MIMAT0015981 Pongo pygmaeus miR-524-3p 12 80
aly-miR399b-5p MIMAT0017573 Arabidopsis lyrata miR399b-5p 12 80
hsa-miR-3197 MIMAT0015082 Homo sapiens miR-3197 12 80
rlcv-miR-rL1-31-3p MIMAT0016956 Rhesus lymphocryptovirus miR-rL1... 12 80
dvi-miR-87-5p MIMAT0032094 Drosophila virilis miR-87-5p 12 80
ptr-miR-566 MIMAT0008244 Pan troglodytes miR-566 12 80
ptr-miR-525 MIMAT0008209 Pan troglodytes miR-525 12 80
ptr-miR-524 MIMAT0008208 Pan troglodytes miR-524 12 80
hsa-miR-668-5p MIMAT0026636 Homo sapiens miR-668-5p 12 80
hsa-miR-566 MIMAT0003230 Homo sapiens miR-566 12 80
hsa-miR-524-3p MIMAT0002850 Homo sapiens miR-524-3p 12 80
hsa-miR-525-3p MIMAT0002839 Homo sapiens miR-525-3p 12 80
dme-miR-87-5p MIMAT0020821 Drosophila melanogaster miR-87-5p 12 80
cel-miR-246-5p MIMAT0020337 Caenorhabditis elegans miR-246-5p 12 80
>kshv-miR-K12-8-3p MIMAT0002186 Kaposi sarcoma-associated
miR-K12-8-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggcgc 7
|||||||
Sbjct: 2 taggcgc 8
>ame-miR-9886 MIMAT0037290 Apis mellifera miR-9886
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggcg 6
||||||
Sbjct: 1 taggcg 6
>ggo-miR-524-3p MIMAT0036424 Gorilla gorilla miR-524-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 3 aggcgc 8
>ggo-miR-525-3p MIMAT0036413 Gorilla gorilla miR-525-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 3 aggcgc 8
>efu-miR-337 MIMAT0034928 Eptesicus fuscus miR-337
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taggcg 6
||||||
Sbjct: 6 taggcg 1
>ppc-miR-8220-5p MIMAT0032874 Pristionchus pacificus miR-8220-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 1 aggcgc 6
>cel-miR-8194-5p MIMAT0032801 Caenorhabditis elegans miR-8194-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>mmu-miR-6546-5p MIMAT0029792 Mus musculus miR-6546-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 1 aggcgc 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>oan-miR-7425-3p MIMAT0029001 Ornithorhynchus anatinus
miR-7425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggcg 6
||||||
Sbjct: 1 taggcg 6
>hsa-miR-6722-5p MIMAT0025853 Homo sapiens miR-6722-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 1 aggcgc 6
>tca-miR-3887-3p MIMAT0018873 Tribolium castaneum miR-3887-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>ppy-miR-566 MIMAT0016010 Pongo pygmaeus miR-566
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>ppy-miR-525-3p MIMAT0015983 Pongo pygmaeus miR-525-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 3 aggcgc 8
>ppy-miR-524-3p MIMAT0015981 Pongo pygmaeus miR-524-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 3 aggcgc 8
>aly-miR399b-5p MIMAT0017573 Arabidopsis lyrata miR399b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>hsa-miR-3197 MIMAT0015082 Homo sapiens miR-3197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 3 aggcgc 8
>rlcv-miR-rL1-31-3p MIMAT0016956 Rhesus lymphocryptovirus
miR-rL1-31-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggcg 6
||||||
Sbjct: 1 taggcg 6
>dvi-miR-87-5p MIMAT0032094 Drosophila virilis miR-87-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>ptr-miR-566 MIMAT0008244 Pan troglodytes miR-566
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>ptr-miR-525 MIMAT0008209 Pan troglodytes miR-525
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 3 aggcgc 8
>ptr-miR-524 MIMAT0008208 Pan troglodytes miR-524
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 3 aggcgc 8
>hsa-miR-668-5p MIMAT0026636 Homo sapiens miR-668-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 7 aggcgc 2
>hsa-miR-566 MIMAT0003230 Homo sapiens miR-566
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>hsa-miR-524-3p MIMAT0002850 Homo sapiens miR-524-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 3 aggcgc 8
>hsa-miR-525-3p MIMAT0002839 Homo sapiens miR-525-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 3 aggcgc 8
>dme-miR-87-5p MIMAT0020821 Drosophila melanogaster miR-87-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>cel-miR-246-5p MIMAT0020337 Caenorhabditis elegans miR-246-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taggcg 6
||||||
Sbjct: 6 taggcg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 34
Number of extensions: 33
Number of successful extensions: 28
Number of sequences better than 100.0: 27
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 28
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
