BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= sgiv-miR-1-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oan-miR-7425-3p MIMAT0029001 Ornithorhynchus anatinus miR-7425-3p 14 20
ame-miR-9886 MIMAT0037290 Apis mellifera miR-9886 12 80
chi-miR-25-5p MIMAT0036099 Capra hircus miR-25-5p 12 80
bfv-miR-BF2-3p MIMAT0035756 Bovine foamy miR-BF2-3p 12 80
efu-miR-337 MIMAT0034928 Eptesicus fuscus miR-337 12 80
gra-miR8754 MIMAT0034183 Gossypium raimondii miR8754 12 80
ssa-miR-25-3-5p MIMAT0032562 Salmo salar miR-25-3-5p 12 80
ssa-miR-25-5p MIMAT0032560 Salmo salar miR-25-5p 12 80
mmu-miR-7687-5p MIMAT0029902 Mus musculus miR-7687-5p 12 80
hsa-miR-6880-3p MIMAT0027661 Homo sapiens miR-6880-3p 12 80
ptr-miR-3937 MIMAT0024055 Pan troglodytes miR-3937 12 80
cgr-miR-25-5p MIMAT0023869 Cricetulus griseus miR-25-5p 12 80
hsa-miR-6087 MIMAT0023712 Homo sapiens miR-6087 12 80
hsa-miR-6078 MIMAT0023703 Homo sapiens miR-6078 12 80
asu-miR-87a-5p MIMAT0021481 Ascaris suum miR-87a-5p 12 80
hsa-miR-3937 MIMAT0018352 Homo sapiens miR-3937 12 80
cin-miR-4061-5p MIMAT0016610 Ciona intestinalis miR-4061-5p 12 80
rlcv-miR-rL1-31-3p MIMAT0016956 Rhesus lymphocryptovirus miR-rL1... 12 80
bta-miR-2899 MIMAT0013857 Bos taurus miR-2899 12 80
ptr-miR-663a MIMAT0008309 Pan troglodytes miR-663a 12 80
mml-miR-663 MIMAT0006502 Macaca mulatta miR-663 12 80
hsa-miR-663a MIMAT0003326 Homo sapiens miR-663a 12 80
dre-miR-25-5p MIMAT0031946 Danio rerio miR-25-5p 12 80
rno-miR-25-5p MIMAT0004713 Rattus norvegicus miR-25-5p 12 80
mmu-miR-25-5p MIMAT0017049 Mus musculus miR-25-5p 12 80
cel-miR-246-5p MIMAT0020337 Caenorhabditis elegans miR-246-5p 12 80
hsa-miR-25-5p MIMAT0004498 Homo sapiens miR-25-5p 12 80
>oan-miR-7425-3p MIMAT0029001 Ornithorhynchus anatinus
miR-7425-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggcgg 7
|||||||
Sbjct: 1 taggcgg 7
>ame-miR-9886 MIMAT0037290 Apis mellifera miR-9886
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggcg 6
||||||
Sbjct: 1 taggcg 6
>chi-miR-25-5p MIMAT0036099 Capra hircus miR-25-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 1 aggcgg 6
>bfv-miR-BF2-3p MIMAT0035756 Bovine foamy miR-BF2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 3 aggcgg 8
>efu-miR-337 MIMAT0034928 Eptesicus fuscus miR-337
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taggcg 6
||||||
Sbjct: 6 taggcg 1
>gra-miR8754 MIMAT0034183 Gossypium raimondii miR8754
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgg 7
||||||
Sbjct: 8 aggcgg 3
>ssa-miR-25-3-5p MIMAT0032562 Salmo salar miR-25-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 1 aggcgg 6
>ssa-miR-25-5p MIMAT0032560 Salmo salar miR-25-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 1 aggcgg 6
>mmu-miR-7687-5p MIMAT0029902 Mus musculus miR-7687-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 1 aggcgg 6
>hsa-miR-6880-3p MIMAT0027661 Homo sapiens miR-6880-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgg 7
||||||
Sbjct: 6 aggcgg 1
>ptr-miR-3937 MIMAT0024055 Pan troglodytes miR-3937
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 3 aggcgg 8
>cgr-miR-25-5p MIMAT0023869 Cricetulus griseus miR-25-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 1 aggcgg 6
>hsa-miR-6087 MIMAT0023712 Homo sapiens miR-6087
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 3 aggcgg 8
>hsa-miR-6078 MIMAT0023703 Homo sapiens miR-6078
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgg 7
||||||
Sbjct: 6 aggcgg 1
>asu-miR-87a-5p MIMAT0021481 Ascaris suum miR-87a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgg 7
||||||
Sbjct: 6 aggcgg 1
>hsa-miR-3937 MIMAT0018352 Homo sapiens miR-3937
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 3 aggcgg 8
>cin-miR-4061-5p MIMAT0016610 Ciona intestinalis miR-4061-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 1 aggcgg 6
>rlcv-miR-rL1-31-3p MIMAT0016956 Rhesus lymphocryptovirus
miR-rL1-31-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggcg 6
||||||
Sbjct: 1 taggcg 6
>bta-miR-2899 MIMAT0013857 Bos taurus miR-2899
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 1 aggcgg 6
>ptr-miR-663a MIMAT0008309 Pan troglodytes miR-663a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 1 aggcgg 6
>mml-miR-663 MIMAT0006502 Macaca mulatta miR-663
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 1 aggcgg 6
>hsa-miR-663a MIMAT0003326 Homo sapiens miR-663a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 1 aggcgg 6
>dre-miR-25-5p MIMAT0031946 Danio rerio miR-25-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 1 aggcgg 6
>rno-miR-25-5p MIMAT0004713 Rattus norvegicus miR-25-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 1 aggcgg 6
>mmu-miR-25-5p MIMAT0017049 Mus musculus miR-25-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 1 aggcgg 6
>cel-miR-246-5p MIMAT0020337 Caenorhabditis elegans miR-246-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taggcg 6
||||||
Sbjct: 6 taggcg 1
>hsa-miR-25-5p MIMAT0004498 Homo sapiens miR-25-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgg 7
||||||
Sbjct: 1 aggcgg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 50
Number of extensions: 49
Number of successful extensions: 27
Number of sequences better than 100.0: 27
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 27
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
