BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-12-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
zma-miR395i-5p MIMAT0015341 Zea mays miR395i-5p 16 6.9
zma-miR395b-5p MIMAT0015164 Zea mays miR395b-5p 16 6.9
ata-miR395f-5p MIMAT0037184 Aegilops tauschii miR395f-5p 14 27
ata-miR395d-5p MIMAT0037164 Aegilops tauschii miR395d-5p 14 27
ata-miR395a-5p MIMAT0037162 Aegilops tauschii miR395a-5p 14 27
ata-miR395b-5p MIMAT0037150 Aegilops tauschii miR395b-5p 14 27
ssc-miR-9796-3p MIMAT0037014 Sus scrofa miR-9796-3p 14 27
ppe-miR395o MIMAT0031493 Prunus persica miR395o 14 27
ppe-miR395b-5p MIMAT0031479 Prunus persica miR395b-5p 14 27
ppe-miR395a-5p MIMAT0031477 Prunus persica miR395a-5p 14 27
bdi-miR395o-5p MIMAT0030093 Brachypodium distachyon miR395o-5p 14 27
mmu-miR-1258-3p MIMAT0029905 Mus musculus miR-1258-3p 14 27
mdo-miR-7384-3p MIMAT0028825 Monodelphis domestica miR-7384-3p 14 27
hsa-miR-6883-3p MIMAT0027667 Homo sapiens miR-6883-3p 14 27
hsa-miR-6822-5p MIMAT0027544 Homo sapiens miR-6822-5p 14 27
hsa-miR-6750-5p MIMAT0027400 Homo sapiens miR-6750-5p 14 27
bdi-miR395n-5p MIMAT0027096 Brachypodium distachyon miR395n-5p 14 27
bdi-miR395l-5p MIMAT0027095 Brachypodium distachyon miR395l-5p 14 27
bdi-miR395k-5p MIMAT0027094 Brachypodium distachyon miR395k-5p 14 27
bdi-miR395h-5p MIMAT0027092 Brachypodium distachyon miR395h-5p 14 27
bdi-miR395f-5p MIMAT0027090 Brachypodium distachyon miR395f-5p 14 27
bdi-miR395c-5p MIMAT0027074 Brachypodium distachyon miR395c-5p 14 27
csi-miR482c MIMAT0018495 Citrus sinensis miR482c 14 27
hsa-miR-642b-5p MIMAT0022736 Homo sapiens miR-642b-5p 14 27
aly-miR395h-5p MIMAT0017667 Arabidopsis lyrata miR395h-5p 14 27
aly-miR408-5p MIMAT0017587 Arabidopsis lyrata miR408-5p 14 27
aly-miR395f-5p MIMAT0017555 Arabidopsis lyrata miR395f-5p 14 27
aly-miR395c-5p MIMAT0017549 Arabidopsis lyrata miR395c-5p 14 27
aly-miR395b-5p MIMAT0017547 Arabidopsis lyrata miR395b-5p 14 27
zma-miR395p-5p MIMAT0015348 Zea mays miR395p-5p 14 27
zma-miR395j-5p MIMAT0015342 Zea mays miR395j-5p 14 27
zma-miR395h-5p MIMAT0015340 Zea mays miR395h-5p 14 27
zma-miR395e-5p MIMAT0015337 Zea mays miR395e-5p 14 27
dvi-miR-6-2-5p MIMAT0032053 Drosophila virilis miR-6-2-5p 14 27
dsi-miR-6-5p MIMAT0015283 Drosophila simulans miR-6-5p 14 27
oan-miR-1409-5p MIMAT0007226 Ornithorhynchus anatinus miR-1409-5p 14 27
zma-miR395c-5p MIMAT0015165 Zea mays miR395c-5p 14 27
dme-miR-6-3-5p MIMAT0020789 Drosophila melanogaster miR-6-3-5p 14 27
dme-miR-6-2-5p MIMAT0020788 Drosophila melanogaster miR-6-2-5p 14 27
>zma-miR395i-5p MIMAT0015341 Zea mays miR395i-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tagggaac 8
||||||||
Sbjct: 8 tagggaac 1
>zma-miR395b-5p MIMAT0015164 Zea mays miR395b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tagggaac 8
||||||||
Sbjct: 8 tagggaac 1
>ata-miR395f-5p MIMAT0037184 Aegilops tauschii miR395f-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>ata-miR395d-5p MIMAT0037164 Aegilops tauschii miR395d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 8 agggaac 2
>ata-miR395a-5p MIMAT0037162 Aegilops tauschii miR395a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>ata-miR395b-5p MIMAT0037150 Aegilops tauschii miR395b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>ssc-miR-9796-3p MIMAT0037014 Sus scrofa miR-9796-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agggaac 8
|||||||
Sbjct: 2 agggaac 8
>ppe-miR395o MIMAT0031493 Prunus persica miR395o
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>ppe-miR395b-5p MIMAT0031479 Prunus persica miR395b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>ppe-miR395a-5p MIMAT0031477 Prunus persica miR395a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>bdi-miR395o-5p MIMAT0030093 Brachypodium distachyon miR395o-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagggaa 7
|||||||
Sbjct: 8 tagggaa 2
>mmu-miR-1258-3p MIMAT0029905 Mus musculus miR-1258-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagggaa 7
|||||||
Sbjct: 2 tagggaa 8
>mdo-miR-7384-3p MIMAT0028825 Monodelphis domestica miR-7384-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agggaac 8
|||||||
Sbjct: 1 agggaac 7
>hsa-miR-6883-3p MIMAT0027667 Homo sapiens miR-6883-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagggaa 7
|||||||
Sbjct: 7 tagggaa 1
>hsa-miR-6822-5p MIMAT0027544 Homo sapiens miR-6822-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agggaac 8
|||||||
Sbjct: 2 agggaac 8
>hsa-miR-6750-5p MIMAT0027400 Homo sapiens miR-6750-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agggaac 8
|||||||
Sbjct: 2 agggaac 8
>bdi-miR395n-5p MIMAT0027096 Brachypodium distachyon miR395n-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>bdi-miR395l-5p MIMAT0027095 Brachypodium distachyon miR395l-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>bdi-miR395k-5p MIMAT0027094 Brachypodium distachyon miR395k-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>bdi-miR395h-5p MIMAT0027092 Brachypodium distachyon miR395h-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>bdi-miR395f-5p MIMAT0027090 Brachypodium distachyon miR395f-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>bdi-miR395c-5p MIMAT0027074 Brachypodium distachyon miR395c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>csi-miR482c MIMAT0018495 Citrus sinensis miR482c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagggaa 7
|||||||
Sbjct: 7 tagggaa 1
>hsa-miR-642b-5p MIMAT0022736 Homo sapiens miR-642b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 8 agggaac 2
>aly-miR395h-5p MIMAT0017667 Arabidopsis lyrata miR395h-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>aly-miR408-5p MIMAT0017587 Arabidopsis lyrata miR408-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agggaac 8
|||||||
Sbjct: 2 agggaac 8
>aly-miR395f-5p MIMAT0017555 Arabidopsis lyrata miR395f-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>aly-miR395c-5p MIMAT0017549 Arabidopsis lyrata miR395c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>aly-miR395b-5p MIMAT0017547 Arabidopsis lyrata miR395b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>zma-miR395p-5p MIMAT0015348 Zea mays miR395p-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>zma-miR395j-5p MIMAT0015342 Zea mays miR395j-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>zma-miR395h-5p MIMAT0015340 Zea mays miR395h-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>zma-miR395e-5p MIMAT0015337 Zea mays miR395e-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>dvi-miR-6-2-5p MIMAT0032053 Drosophila virilis miR-6-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agggaac 8
|||||||
Sbjct: 1 agggaac 7
>dsi-miR-6-5p MIMAT0015283 Drosophila simulans miR-6-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agggaac 8
|||||||
Sbjct: 1 agggaac 7
>oan-miR-1409-5p MIMAT0007226 Ornithorhynchus anatinus
miR-1409-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agggaac 8
|||||||
Sbjct: 2 agggaac 8
>zma-miR395c-5p MIMAT0015165 Zea mays miR395c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agggaac 8
|||||||
Sbjct: 7 agggaac 1
>dme-miR-6-3-5p MIMAT0020789 Drosophila melanogaster miR-6-3-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agggaac 8
|||||||
Sbjct: 1 agggaac 7
>dme-miR-6-2-5p MIMAT0020788 Drosophila melanogaster miR-6-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agggaac 8
|||||||
Sbjct: 1 agggaac 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 249
Number of extensions: 208
Number of successful extensions: 168
Number of sequences better than 100.0: 39
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 39
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
