BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h13
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdo-miR-7375-3p MIMAT0028797 Monodelphis domestica miR-7375-3p 14 20
hsv1-miR-H13 MIMAT0014690 Herpes Simplex miR-H13 14 20
eca-miR-9156 MIMAT0034732 Equus caballus miR-9156 12 80
eca-miR-1249 MIMAT0034563 Equus caballus miR-1249 12 80
gra-miR8700 MIMAT0034081 Gossypium raimondii miR8700 12 80
atr-miR8611 MIMAT0033903 Amborella trichopoda miR8611 12 80
ppc-miR-8218a-5p MIMAT0032866 Pristionchus pacificus miR-8218a-5p 12 80
ssa-miR-18b-3p MIMAT0032435 Salmo salar miR-18b-3p 12 80
lja-miR7525 MIMAT0029341 Lotus japonicus miR7525 12 80
ssc-miR-7139-3p MIMAT0028154 Sus scrofa miR-7139-3p 12 80
hsa-miR-6726-3p MIMAT0027354 Homo sapiens miR-6726-3p 12 80
mja-miR-6494 MIMAT0025303 Marsupenaeus japonicus miR-6494 12 80
rno-miR-3473 MIMAT0024853 Rattus norvegicus miR-3473 12 80
cgr-miR-146b-3p MIMAT0023776 Cricetulus griseus miR-146b-3p 12 80
bdi-miR5201-3p MIMAT0020758 Brachypodium distachyon miR5201-3p 12 80
hsa-miR-3157-3p MIMAT0019210 Homo sapiens miR-3157-3p 12 80
mmu-miR-3109-3p MIMAT0014950 Mus musculus miR-3109-3p 12 80
hsa-miR-2909 MIMAT0013863 Homo sapiens miR-2909 12 80
bta-miR-2900 MIMAT0013858 Bos taurus miR-2900 12 80
osa-miR1874-5p MIMAT0007827 Oryza sativa miR1874-5p 12 80
osa-miR1870-3p MIMAT0015270 Oryza sativa miR1870-3p 12 80
gga-miR-1659 MIMAT0007540 Gallus gallus miR-1659 12 80
gga-miR-1583 MIMAT0007444 Gallus gallus miR-1583 12 80
oan-miR-146b-3p MIMAT0007008 Ornithorhynchus anatinus miR-146b-3p 12 80
mmu-miR-146b-3p MIMAT0004826 Mus musculus miR-146b-3p 12 80
dre-miR-18b-3p MIMAT0003397 Danio rerio miR-18b-3p 12 80
dme-miR-310-5p MIMAT0020836 Drosophila melanogaster miR-310-5p 12 80
mmu-miR-186-3p MIMAT0004540 Mus musculus miR-186-3p 12 80
>mdo-miR-7375-3p MIMAT0028797 Monodelphis domestica miR-7375-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagggcg 7
|||||||
Sbjct: 1 tagggcg 7
>hsv1-miR-H13 MIMAT0014690 Herpes Simplex miR-H13
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagggcg 7
|||||||
Sbjct: 2 tagggcg 8
>eca-miR-9156 MIMAT0034732 Equus caballus miR-9156
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggc 6
||||||
Sbjct: 3 tagggc 8
>eca-miR-1249 MIMAT0034563 Equus caballus miR-1249
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agggcg 7
||||||
Sbjct: 8 agggcg 3
>gra-miR8700 MIMAT0034081 Gossypium raimondii miR8700
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggcg 7
||||||
Sbjct: 1 agggcg 6
>atr-miR8611 MIMAT0033903 Amborella trichopoda miR8611
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggcg 7
||||||
Sbjct: 3 agggcg 8
>ppc-miR-8218a-5p MIMAT0032866 Pristionchus pacificus
miR-8218a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggcg 7
||||||
Sbjct: 3 agggcg 8
>ssa-miR-18b-3p MIMAT0032435 Salmo salar miR-18b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagggc 6
||||||
Sbjct: 8 tagggc 3
>lja-miR7525 MIMAT0029341 Lotus japonicus miR7525
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggcg 7
||||||
Sbjct: 1 agggcg 6
>ssc-miR-7139-3p MIMAT0028154 Sus scrofa miR-7139-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggc 6
||||||
Sbjct: 1 tagggc 6
>hsa-miR-6726-3p MIMAT0027354 Homo sapiens miR-6726-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agggcg 7
||||||
Sbjct: 8 agggcg 3
>mja-miR-6494 MIMAT0025303 Marsupenaeus japonicus miR-6494
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggcg 7
||||||
Sbjct: 1 agggcg 6
>rno-miR-3473 MIMAT0024853 Rattus norvegicus miR-3473
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggc 6
||||||
Sbjct: 3 tagggc 8
>cgr-miR-146b-3p MIMAT0023776 Cricetulus griseus miR-146b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagggc 6
||||||
Sbjct: 6 tagggc 1
>bdi-miR5201-3p MIMAT0020758 Brachypodium distachyon miR5201-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggcg 7
||||||
Sbjct: 1 agggcg 6
>hsa-miR-3157-3p MIMAT0019210 Homo sapiens miR-3157-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagggc 6
||||||
Sbjct: 8 tagggc 3
>mmu-miR-3109-3p MIMAT0014950 Mus musculus miR-3109-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggc 6
||||||
Sbjct: 1 tagggc 6
>hsa-miR-2909 MIMAT0013863 Homo sapiens miR-2909
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggc 6
||||||
Sbjct: 3 tagggc 8
>bta-miR-2900 MIMAT0013858 Bos taurus miR-2900
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggcg 7
||||||
Sbjct: 1 agggcg 6
>osa-miR1874-5p MIMAT0007827 Oryza sativa miR1874-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggc 6
||||||
Sbjct: 1 tagggc 6
>osa-miR1870-3p MIMAT0015270 Oryza sativa miR1870-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggc 6
||||||
Sbjct: 3 tagggc 8
>gga-miR-1659 MIMAT0007540 Gallus gallus miR-1659
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggc 6
||||||
Sbjct: 1 tagggc 6
>gga-miR-1583 MIMAT0007444 Gallus gallus miR-1583
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggc 6
||||||
Sbjct: 3 tagggc 8
>oan-miR-146b-3p MIMAT0007008 Ornithorhynchus anatinus
miR-146b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagggc 6
||||||
Sbjct: 6 tagggc 1
>mmu-miR-146b-3p MIMAT0004826 Mus musculus miR-146b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagggc 6
||||||
Sbjct: 6 tagggc 1
>dre-miR-18b-3p MIMAT0003397 Danio rerio miR-18b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagggc 6
||||||
Sbjct: 8 tagggc 3
>dme-miR-310-5p MIMAT0020836 Drosophila melanogaster miR-310-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggcg 7
||||||
Sbjct: 1 agggcg 6
>mmu-miR-186-3p MIMAT0004540 Mus musculus miR-186-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagggc 6
||||||
Sbjct: 6 tagggc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 72
Number of extensions: 70
Number of successful extensions: 28
Number of sequences better than 100.0: 28
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 28
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
