BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m21-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B22-3p MIMAT0031773 Herpes B miR-B22-3p 14 20
mdo-miR-7355-5p MIMAT0028722 Monodelphis domestica miR-7355-5p 14 20
hsa-miR-6824-5p MIMAT0027548 Homo sapiens miR-6824-5p 14 20
hsa-miR-6783-5p MIMAT0027466 Homo sapiens miR-6783-5p 14 20
mcmv-miR-m21-1 MIMAT0005540 Mouse cytomegalovirus miR-m21-1 14 20
efu-miR-9246c MIMAT0034863 Eptesicus fuscus miR-9246c 12 80
eca-miR-8966 MIMAT0034501 Equus caballus miR-8966 12 80
mmu-miR-7653-3p MIMAT0029813 Mus musculus miR-7653-3p 12 80
oan-miR-7422b-5p MIMAT0029022 Ornithorhynchus anatinus miR-7422b-5p 12 80
mdo-miR-7339-3p MIMAT0028687 Monodelphis domestica miR-7339-3p 12 80
mdo-miR-505-5p MIMAT0028662 Monodelphis domestica miR-505-5p 12 80
mmu-miR-7081-3p MIMAT0028069 Mus musculus miR-7081-3p 12 80
mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p 12 80
mmu-miR-7000-5p MIMAT0027902 Mus musculus miR-7000-5p 12 80
mmu-miR-6986-5p MIMAT0027874 Mus musculus miR-6986-5p 12 80
mmu-miR-6949-3p MIMAT0027799 Mus musculus miR-6949-3p 12 80
mmu-miR-6928-5p MIMAT0027756 Mus musculus miR-6928-5p 12 80
mmu-miR-6925-3p MIMAT0027751 Mus musculus miR-6925-3p 12 80
hsa-miR-6887-3p MIMAT0027675 Homo sapiens miR-6887-3p 12 80
hsa-miR-6810-3p MIMAT0027521 Homo sapiens miR-6810-3p 12 80
hsa-miR-6805-5p MIMAT0027510 Homo sapiens miR-6805-5p 12 80
hsa-miR-6782-5p MIMAT0027464 Homo sapiens miR-6782-5p 12 80
hsa-miR-6756-3p MIMAT0027413 Homo sapiens miR-6756-3p 12 80
hsa-miR-6732-5p MIMAT0027365 Homo sapiens miR-6732-5p 12 80
gga-miR-6562-5p MIMAT0025832 Gallus gallus miR-6562-5p 12 80
bta-miR-6535 MIMAT0025571 Bos taurus miR-6535 12 80
mmu-miR-6418-5p MIMAT0025173 Mus musculus miR-6418-5p 12 80
cca-miR6107 MIMAT0024541 Cynara cardunculus miR6107 12 80
ggo-miR-4488 MIMAT0024152 Gorilla gorilla miR-4488 12 80
mtr-miR5273 MIMAT0021308 Medicago truncatula miR5273 12 80
hsa-miR-5195-5p MIMAT0021126 Homo sapiens miR-5195-5p 12 80
gma-miR5043 MIMAT0021074 Glycine max miR5043 12 80
hsa-miR-4688 MIMAT0019777 Homo sapiens miR-4688 12 80
hsa-miR-4652-5p MIMAT0019716 Homo sapiens miR-4652-5p 12 80
pma-miR-4620 MIMAT0019654 Petromyzon marinus miR-4620 12 80
ame-miR-3718a MIMAT0018520 Apis mellifera miR-3718a 12 80
cin-miR-4005b-3p MIMAT0016468 Ciona intestinalis miR-4005b-3p 12 80
hsa-miR-3144-5p MIMAT0015014 Homo sapiens miR-3144-5p 12 80
hsa-miR-3127-3p MIMAT0019201 Homo sapiens miR-3127-3p 12 80
mmu-miR-3104-5p MIMAT0014939 Mus musculus miR-3104-5p 12 80
mmu-miR-3092-5p MIMAT0014905 Mus musculus miR-3092-5p 12 80
tgu-miR-2962-3p MIMAT0014621 Taeniopygia guttata miR-2962-3p 12 80
bta-miR-2382-5p MIMAT0011930 Bos taurus miR-2382-5p 12 80
tca-miR-14-5p MIMAT0019105 Tribolium castaneum miR-14-5p 12 80
smo-miR1110 MIMAT0005267 Selaginella moellendorffii miR1110 12 80
smo-miR1085-5p MIMAT0005236 Selaginella moellendorffii miR1085-5p 12 80
ath-miR853 MIMAT0004276 Arabidopsis thaliana miR853 12 80
>hbv-miR-B22-3p MIMAT0031773 Herpes B miR-B22-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagggga 7
|||||||
Sbjct: 1 tagggga 7
>mdo-miR-7355-5p MIMAT0028722 Monodelphis domestica miR-7355-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagggga 7
|||||||
Sbjct: 1 tagggga 7
>hsa-miR-6824-5p MIMAT0027548 Homo sapiens miR-6824-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagggga 7
|||||||
Sbjct: 2 tagggga 8
>hsa-miR-6783-5p MIMAT0027466 Homo sapiens miR-6783-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagggga 7
|||||||
Sbjct: 1 tagggga 7
>mcmv-miR-m21-1 MIMAT0005540 Mouse cytomegalovirus miR-m21-1
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagggga 7
|||||||
Sbjct: 2 tagggga 8
>efu-miR-9246c MIMAT0034863 Eptesicus fuscus miR-9246c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agggga 7
||||||
Sbjct: 6 agggga 1
>eca-miR-8966 MIMAT0034501 Equus caballus miR-8966
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 1 agggga 6
>mmu-miR-7653-3p MIMAT0029813 Mus musculus miR-7653-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagggg 6
||||||
Sbjct: 6 tagggg 1
>oan-miR-7422b-5p MIMAT0029022 Ornithorhynchus anatinus
miR-7422b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 1 agggga 6
>mdo-miR-7339-3p MIMAT0028687 Monodelphis domestica miR-7339-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggg 6
||||||
Sbjct: 3 tagggg 8
>mdo-miR-505-5p MIMAT0028662 Monodelphis domestica miR-505-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 1 agggga 6
>mmu-miR-7081-3p MIMAT0028069 Mus musculus miR-7081-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agggga 7
||||||
Sbjct: 7 agggga 2
>mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 1 agggga 6
>mmu-miR-7000-5p MIMAT0027902 Mus musculus miR-7000-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 1 agggga 6
>mmu-miR-6986-5p MIMAT0027874 Mus musculus miR-6986-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 1 agggga 6
>mmu-miR-6949-3p MIMAT0027799 Mus musculus miR-6949-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agggga 7
||||||
Sbjct: 7 agggga 2
>mmu-miR-6928-5p MIMAT0027756 Mus musculus miR-6928-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 1 agggga 6
>mmu-miR-6925-3p MIMAT0027751 Mus musculus miR-6925-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agggga 7
||||||
Sbjct: 6 agggga 1
>hsa-miR-6887-3p MIMAT0027675 Homo sapiens miR-6887-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agggga 7
||||||
Sbjct: 6 agggga 1
>hsa-miR-6810-3p MIMAT0027521 Homo sapiens miR-6810-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agggga 7
||||||
Sbjct: 6 agggga 1
>hsa-miR-6805-5p MIMAT0027510 Homo sapiens miR-6805-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggg 6
||||||
Sbjct: 1 tagggg 6
>hsa-miR-6782-5p MIMAT0027464 Homo sapiens miR-6782-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggg 6
||||||
Sbjct: 1 tagggg 6
>hsa-miR-6756-3p MIMAT0027413 Homo sapiens miR-6756-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agggga 7
||||||
Sbjct: 6 agggga 1
>hsa-miR-6732-5p MIMAT0027365 Homo sapiens miR-6732-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggg 6
||||||
Sbjct: 1 tagggg 6
>gga-miR-6562-5p MIMAT0025832 Gallus gallus miR-6562-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 1 agggga 6
>bta-miR-6535 MIMAT0025571 Bos taurus miR-6535
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggg 6
||||||
Sbjct: 1 tagggg 6
>mmu-miR-6418-5p MIMAT0025173 Mus musculus miR-6418-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 3 agggga 8
>cca-miR6107 MIMAT0024541 Cynara cardunculus miR6107
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 3 agggga 8
>ggo-miR-4488 MIMAT0024152 Gorilla gorilla miR-4488
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggg 6
||||||
Sbjct: 1 tagggg 6
>mtr-miR5273 MIMAT0021308 Medicago truncatula miR5273
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggg 6
||||||
Sbjct: 1 tagggg 6
>hsa-miR-5195-5p MIMAT0021126 Homo sapiens miR-5195-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagggg 6
||||||
Sbjct: 8 tagggg 3
>gma-miR5043 MIMAT0021074 Glycine max miR5043
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agggga 7
||||||
Sbjct: 8 agggga 3
>hsa-miR-4688 MIMAT0019777 Homo sapiens miR-4688
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggg 6
||||||
Sbjct: 1 tagggg 6
>hsa-miR-4652-5p MIMAT0019716 Homo sapiens miR-4652-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 1 agggga 6
>pma-miR-4620 MIMAT0019654 Petromyzon marinus miR-4620
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggg 6
||||||
Sbjct: 1 tagggg 6
>ame-miR-3718a MIMAT0018520 Apis mellifera miR-3718a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agggga 7
||||||
Sbjct: 6 agggga 1
>cin-miR-4005b-3p MIMAT0016468 Ciona intestinalis miR-4005b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 3 agggga 8
>hsa-miR-3144-5p MIMAT0015014 Homo sapiens miR-3144-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 1 agggga 6
>hsa-miR-3127-3p MIMAT0019201 Homo sapiens miR-3127-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agggga 7
||||||
Sbjct: 6 agggga 1
>mmu-miR-3104-5p MIMAT0014939 Mus musculus miR-3104-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggg 6
||||||
Sbjct: 1 tagggg 6
>mmu-miR-3092-5p MIMAT0014905 Mus musculus miR-3092-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 1 agggga 6
>tgu-miR-2962-3p MIMAT0014621 Taeniopygia guttata miR-2962-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agggga 7
||||||
Sbjct: 8 agggga 3
>bta-miR-2382-5p MIMAT0011930 Bos taurus miR-2382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 1 agggga 6
>tca-miR-14-5p MIMAT0019105 Tribolium castaneum miR-14-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agggga 7
||||||
Sbjct: 1 agggga 6
>smo-miR1110 MIMAT0005267 Selaginella moellendorffii miR1110
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagggg 6
||||||
Sbjct: 3 tagggg 8
>smo-miR1085-5p MIMAT0005236 Selaginella moellendorffii
miR1085-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagggg 6
||||||
Sbjct: 6 tagggg 1
>ath-miR853 MIMAT0004276 Arabidopsis thaliana miR853
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agggga 7
||||||
Sbjct: 6 agggga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 72
Number of extensions: 67
Number of successful extensions: 47
Number of sequences better than 100.0: 47
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 47
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)