BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mcmv-miR-m21-1
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hbv-miR-B22-3p MIMAT0031773 Herpes B miR-B22-3p                        14      20
mdo-miR-7355-5p MIMAT0028722 Monodelphis domestica miR-7355-5p         14      20
hsa-miR-6824-5p MIMAT0027548 Homo sapiens miR-6824-5p                  14      20
hsa-miR-6783-5p MIMAT0027466 Homo sapiens miR-6783-5p                  14      20
mcmv-miR-m21-1 MIMAT0005540 Mouse cytomegalovirus miR-m21-1            14      20
efu-miR-9246c MIMAT0034863 Eptesicus fuscus miR-9246c                  12      80
eca-miR-8966 MIMAT0034501 Equus caballus miR-8966                      12      80
mmu-miR-7653-3p MIMAT0029813 Mus musculus miR-7653-3p                  12      80
oan-miR-7422b-5p MIMAT0029022 Ornithorhynchus anatinus miR-7422b-5p    12      80
mdo-miR-7339-3p MIMAT0028687 Monodelphis domestica miR-7339-3p         12      80
mdo-miR-505-5p MIMAT0028662 Monodelphis domestica miR-505-5p           12      80
mmu-miR-7081-3p MIMAT0028069 Mus musculus miR-7081-3p                  12      80
mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p                  12      80
mmu-miR-7000-5p MIMAT0027902 Mus musculus miR-7000-5p                  12      80
mmu-miR-6986-5p MIMAT0027874 Mus musculus miR-6986-5p                  12      80
mmu-miR-6949-3p MIMAT0027799 Mus musculus miR-6949-3p                  12      80
mmu-miR-6928-5p MIMAT0027756 Mus musculus miR-6928-5p                  12      80
mmu-miR-6925-3p MIMAT0027751 Mus musculus miR-6925-3p                  12      80
hsa-miR-6887-3p MIMAT0027675 Homo sapiens miR-6887-3p                  12      80
hsa-miR-6810-3p MIMAT0027521 Homo sapiens miR-6810-3p                  12      80
hsa-miR-6805-5p MIMAT0027510 Homo sapiens miR-6805-5p                  12      80
hsa-miR-6782-5p MIMAT0027464 Homo sapiens miR-6782-5p                  12      80
hsa-miR-6756-3p MIMAT0027413 Homo sapiens miR-6756-3p                  12      80
hsa-miR-6732-5p MIMAT0027365 Homo sapiens miR-6732-5p                  12      80
gga-miR-6562-5p MIMAT0025832 Gallus gallus miR-6562-5p                 12      80
bta-miR-6535 MIMAT0025571 Bos taurus miR-6535                          12      80
mmu-miR-6418-5p MIMAT0025173 Mus musculus miR-6418-5p                  12      80
cca-miR6107 MIMAT0024541 Cynara cardunculus miR6107                    12      80
ggo-miR-4488 MIMAT0024152 Gorilla gorilla miR-4488                     12      80
mtr-miR5273 MIMAT0021308 Medicago truncatula miR5273                   12      80
hsa-miR-5195-5p MIMAT0021126 Homo sapiens miR-5195-5p                  12      80
gma-miR5043 MIMAT0021074 Glycine max miR5043                           12      80
hsa-miR-4688 MIMAT0019777 Homo sapiens miR-4688                        12      80
hsa-miR-4652-5p MIMAT0019716 Homo sapiens miR-4652-5p                  12      80
pma-miR-4620 MIMAT0019654 Petromyzon marinus miR-4620                  12      80
ame-miR-3718a MIMAT0018520 Apis mellifera miR-3718a                    12      80
cin-miR-4005b-3p MIMAT0016468 Ciona intestinalis miR-4005b-3p          12      80
hsa-miR-3144-5p MIMAT0015014 Homo sapiens miR-3144-5p                  12      80
hsa-miR-3127-3p MIMAT0019201 Homo sapiens miR-3127-3p                  12      80
mmu-miR-3104-5p MIMAT0014939 Mus musculus miR-3104-5p                  12      80
mmu-miR-3092-5p MIMAT0014905 Mus musculus miR-3092-5p                  12      80
tgu-miR-2962-3p MIMAT0014621 Taeniopygia guttata miR-2962-3p           12      80
bta-miR-2382-5p MIMAT0011930 Bos taurus miR-2382-5p                    12      80
tca-miR-14-5p MIMAT0019105 Tribolium castaneum miR-14-5p               12      80
smo-miR1110 MIMAT0005267 Selaginella moellendorffii miR1110            12      80
smo-miR1085-5p MIMAT0005236 Selaginella moellendorffii miR1085-5p      12      80
ath-miR853 MIMAT0004276 Arabidopsis thaliana miR853                    12      80
>hbv-miR-B22-3p MIMAT0031773 Herpes B miR-B22-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagggga 7
         |||||||
Sbjct: 1 tagggga 7
>mdo-miR-7355-5p MIMAT0028722 Monodelphis domestica miR-7355-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagggga 7
         |||||||
Sbjct: 1 tagggga 7
>hsa-miR-6824-5p MIMAT0027548 Homo sapiens miR-6824-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagggga 7
         |||||||
Sbjct: 2 tagggga 8
>hsa-miR-6783-5p MIMAT0027466 Homo sapiens miR-6783-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagggga 7
         |||||||
Sbjct: 1 tagggga 7
>mcmv-miR-m21-1 MIMAT0005540 Mouse cytomegalovirus miR-m21-1
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagggga 7
         |||||||
Sbjct: 2 tagggga 8
>efu-miR-9246c MIMAT0034863 Eptesicus fuscus miR-9246c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 agggga 7
         ||||||
Sbjct: 6 agggga 1
>eca-miR-8966 MIMAT0034501 Equus caballus miR-8966
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 1 agggga 6
>mmu-miR-7653-3p MIMAT0029813 Mus musculus miR-7653-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tagggg 6
         ||||||
Sbjct: 6 tagggg 1
>oan-miR-7422b-5p MIMAT0029022 Ornithorhynchus anatinus
         miR-7422b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 1 agggga 6
>mdo-miR-7339-3p MIMAT0028687 Monodelphis domestica miR-7339-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tagggg 6
         ||||||
Sbjct: 3 tagggg 8
>mdo-miR-505-5p MIMAT0028662 Monodelphis domestica miR-505-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 1 agggga 6
>mmu-miR-7081-3p MIMAT0028069 Mus musculus miR-7081-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 agggga 7
         ||||||
Sbjct: 7 agggga 2
>mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 1 agggga 6
>mmu-miR-7000-5p MIMAT0027902 Mus musculus miR-7000-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 1 agggga 6
>mmu-miR-6986-5p MIMAT0027874 Mus musculus miR-6986-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 1 agggga 6
>mmu-miR-6949-3p MIMAT0027799 Mus musculus miR-6949-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 agggga 7
         ||||||
Sbjct: 7 agggga 2
>mmu-miR-6928-5p MIMAT0027756 Mus musculus miR-6928-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 1 agggga 6
>mmu-miR-6925-3p MIMAT0027751 Mus musculus miR-6925-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 agggga 7
         ||||||
Sbjct: 6 agggga 1
>hsa-miR-6887-3p MIMAT0027675 Homo sapiens miR-6887-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 agggga 7
         ||||||
Sbjct: 6 agggga 1
>hsa-miR-6810-3p MIMAT0027521 Homo sapiens miR-6810-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 agggga 7
         ||||||
Sbjct: 6 agggga 1
>hsa-miR-6805-5p MIMAT0027510 Homo sapiens miR-6805-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tagggg 6
         ||||||
Sbjct: 1 tagggg 6
>hsa-miR-6782-5p MIMAT0027464 Homo sapiens miR-6782-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tagggg 6
         ||||||
Sbjct: 1 tagggg 6
>hsa-miR-6756-3p MIMAT0027413 Homo sapiens miR-6756-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 agggga 7
         ||||||
Sbjct: 6 agggga 1
>hsa-miR-6732-5p MIMAT0027365 Homo sapiens miR-6732-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tagggg 6
         ||||||
Sbjct: 1 tagggg 6
>gga-miR-6562-5p MIMAT0025832 Gallus gallus miR-6562-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 1 agggga 6
>bta-miR-6535 MIMAT0025571 Bos taurus miR-6535
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tagggg 6
         ||||||
Sbjct: 1 tagggg 6
>mmu-miR-6418-5p MIMAT0025173 Mus musculus miR-6418-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 3 agggga 8
>cca-miR6107 MIMAT0024541 Cynara cardunculus miR6107
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 3 agggga 8
>ggo-miR-4488 MIMAT0024152 Gorilla gorilla miR-4488
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tagggg 6
         ||||||
Sbjct: 1 tagggg 6
>mtr-miR5273 MIMAT0021308 Medicago truncatula miR5273
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tagggg 6
         ||||||
Sbjct: 1 tagggg 6
>hsa-miR-5195-5p MIMAT0021126 Homo sapiens miR-5195-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tagggg 6
         ||||||
Sbjct: 8 tagggg 3
>gma-miR5043 MIMAT0021074 Glycine max miR5043
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 agggga 7
         ||||||
Sbjct: 8 agggga 3
>hsa-miR-4688 MIMAT0019777 Homo sapiens miR-4688
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tagggg 6
         ||||||
Sbjct: 1 tagggg 6
>hsa-miR-4652-5p MIMAT0019716 Homo sapiens miR-4652-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 1 agggga 6
>pma-miR-4620 MIMAT0019654 Petromyzon marinus miR-4620
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tagggg 6
         ||||||
Sbjct: 1 tagggg 6
>ame-miR-3718a MIMAT0018520 Apis mellifera miR-3718a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 agggga 7
         ||||||
Sbjct: 6 agggga 1
>cin-miR-4005b-3p MIMAT0016468 Ciona intestinalis miR-4005b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 3 agggga 8
>hsa-miR-3144-5p MIMAT0015014 Homo sapiens miR-3144-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 1 agggga 6
>hsa-miR-3127-3p MIMAT0019201 Homo sapiens miR-3127-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 agggga 7
         ||||||
Sbjct: 6 agggga 1
>mmu-miR-3104-5p MIMAT0014939 Mus musculus miR-3104-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tagggg 6
         ||||||
Sbjct: 1 tagggg 6
>mmu-miR-3092-5p MIMAT0014905 Mus musculus miR-3092-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 1 agggga 6
>tgu-miR-2962-3p MIMAT0014621 Taeniopygia guttata miR-2962-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 agggga 7
         ||||||
Sbjct: 8 agggga 3
>bta-miR-2382-5p MIMAT0011930 Bos taurus miR-2382-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 1 agggga 6
>tca-miR-14-5p MIMAT0019105 Tribolium castaneum miR-14-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agggga 7
         ||||||
Sbjct: 1 agggga 6
>smo-miR1110 MIMAT0005267 Selaginella moellendorffii miR1110
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tagggg 6
         ||||||
Sbjct: 3 tagggg 8
>smo-miR1085-5p MIMAT0005236 Selaginella moellendorffii
         miR1085-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tagggg 6
         ||||||
Sbjct: 6 tagggg 1
>ath-miR853 MIMAT0004276 Arabidopsis thaliana miR853
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 agggga 7
         ||||||
Sbjct: 6 agggga 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 72
Number of extensions: 67
Number of successful extensions: 47
Number of sequences better than 100.0: 47
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 47
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)