BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b22-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B22-3p MIMAT0031773 Herpes B miR-B22-3p 16 6.9
oan-miR-7422b-5p MIMAT0029022 Ornithorhynchus anatinus miR-7422b-5p 14 27
mdo-miR-7355-5p MIMAT0028722 Monodelphis domestica miR-7355-5p 14 27
mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p 14 27
mmu-miR-7072-5p MIMAT0028050 Mus musculus miR-7072-5p 14 27
mmu-miR-6986-5p MIMAT0027874 Mus musculus miR-6986-5p 14 27
hsa-miR-6826-3p MIMAT0027553 Homo sapiens miR-6826-3p 14 27
hsa-miR-6824-5p MIMAT0027548 Homo sapiens miR-6824-5p 14 27
hsa-miR-6783-5p MIMAT0027466 Homo sapiens miR-6783-5p 14 27
bta-miR-2382-5p MIMAT0011930 Bos taurus miR-2382-5p 14 27
bta-miR-2343 MIMAT0011878 Bos taurus miR-2343 14 27
tca-miR-14-5p MIMAT0019105 Tribolium castaneum miR-14-5p 14 27
mcmv-miR-m21-1 MIMAT0005540 Mouse cytomegalovirus miR-m21-1 14 27
>hbv-miR-B22-3p MIMAT0031773 Herpes B miR-B22-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 taggggag 8
||||||||
Sbjct: 1 taggggag 8
>oan-miR-7422b-5p MIMAT0029022 Ornithorhynchus anatinus
miR-7422b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggggag 8
|||||||
Sbjct: 1 aggggag 7
>mdo-miR-7355-5p MIMAT0028722 Monodelphis domestica miR-7355-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagggga 7
|||||||
Sbjct: 1 tagggga 7
>mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggggag 8
|||||||
Sbjct: 1 aggggag 7
>mmu-miR-7072-5p MIMAT0028050 Mus musculus miR-7072-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggggag 8
|||||||
Sbjct: 2 aggggag 8
>mmu-miR-6986-5p MIMAT0027874 Mus musculus miR-6986-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggggag 8
|||||||
Sbjct: 1 aggggag 7
>hsa-miR-6826-3p MIMAT0027553 Homo sapiens miR-6826-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggggag 8
|||||||
Sbjct: 7 aggggag 1
>hsa-miR-6824-5p MIMAT0027548 Homo sapiens miR-6824-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagggga 7
|||||||
Sbjct: 2 tagggga 8
>hsa-miR-6783-5p MIMAT0027466 Homo sapiens miR-6783-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagggga 7
|||||||
Sbjct: 1 tagggga 7
>bta-miR-2382-5p MIMAT0011930 Bos taurus miR-2382-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggggag 8
|||||||
Sbjct: 1 aggggag 7
>bta-miR-2343 MIMAT0011878 Bos taurus miR-2343
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggggag 8
|||||||
Sbjct: 2 aggggag 8
>tca-miR-14-5p MIMAT0019105 Tribolium castaneum miR-14-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggggag 8
|||||||
Sbjct: 1 aggggag 7
>mcmv-miR-m21-1 MIMAT0005540 Mouse cytomegalovirus miR-m21-1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagggga 7
|||||||
Sbjct: 2 tagggga 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 126
Number of extensions: 112
Number of successful extensions: 78
Number of sequences better than 100.0: 13
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
