BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-18
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR8703c MIMAT0034090 Gossypium raimondii miR8703c 14 27
gra-miR8703b MIMAT0034089 Gossypium raimondii miR8703b 14 27
gra-miR8703a MIMAT0034088 Gossypium raimondii miR8703a 14 27
mmu-miR-6921-3p MIMAT0027743 Mus musculus miR-6921-3p 14 27
rgl-miR5573 MIMAT0022998 Rehmannia glutinosa miR5573 14 27
dme-miR-4917-3p MIMAT0020511 Drosophila melanogaster miR-4917-3p 14 27
pma-miR-199b-3p MIMAT0019508 Petromyzon marinus miR-199b-3p 14 27
pma-miR-199a-3p MIMAT0019506 Petromyzon marinus miR-199a-3p 14 27
gga-miR-199b MIMAT0007583 Gallus gallus miR-199b 14 27
ptc-miR480 MIMAT0002096 Populus trichocarpa miR480 14 27
>gra-miR8703c MIMAT0034090 Gossypium raimondii miR8703c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agtagtc 8
|||||||
Sbjct: 1 agtagtc 7
>gra-miR8703b MIMAT0034089 Gossypium raimondii miR8703b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agtagtc 8
|||||||
Sbjct: 1 agtagtc 7
>gra-miR8703a MIMAT0034088 Gossypium raimondii miR8703a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agtagtc 8
|||||||
Sbjct: 1 agtagtc 7
>mmu-miR-6921-3p MIMAT0027743 Mus musculus miR-6921-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agtagtc 8
|||||||
Sbjct: 8 agtagtc 2
>rgl-miR5573 MIMAT0022998 Rehmannia glutinosa miR5573
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agtagtc 8
|||||||
Sbjct: 2 agtagtc 8
>dme-miR-4917-3p MIMAT0020511 Drosophila melanogaster
miR-4917-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagtagt 7
|||||||
Sbjct: 8 tagtagt 2
>pma-miR-199b-3p MIMAT0019508 Petromyzon marinus miR-199b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agtagtc 8
|||||||
Sbjct: 2 agtagtc 8
>pma-miR-199a-3p MIMAT0019506 Petromyzon marinus miR-199a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agtagtc 8
|||||||
Sbjct: 2 agtagtc 8
>gga-miR-199b MIMAT0007583 Gallus gallus miR-199b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agtagtc 8
|||||||
Sbjct: 2 agtagtc 8
>ptc-miR480 MIMAT0002096 Populus trichocarpa miR480
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagtagt 7
|||||||
Sbjct: 7 tagtagt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 133
Number of extensions: 123
Number of successful extensions: 98
Number of sequences better than 100.0: 10
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
