BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-10a
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-6360 MIMAT0025103 Mus musculus miR-6360 16 6.9
gma-miR5785 MIMAT0023191 Glycine max miR5785 16 6.9
kshv-miR-K12-10a-3p MIMAT0002179 Kaposi sarcoma-associated miR-K... 16 6.9
ata-miR2275c-5p MIMAT0037226 Aegilops tauschii miR2275c-5p 14 27
tch-miR-142 MIMAT0036470 Tupaia chinensis miR-142 14 27
chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p 14 27
ppc-miR-8299-5p MIMAT0033115 Pristionchus pacificus miR-8299-5p 14 27
prd-miR-5358b-5p MIMAT0030572 Panagrellus redivivus miR-5358b-5p 14 27
ipu-miR-142 MIMAT0029419 Ictalurus punctatus miR-142 14 27
ccr-miR-142-3p MIMAT0026223 Cyprinus carpio miR-142-3p 14 27
gga-miR-6553-3p MIMAT0025614 Gallus gallus miR-6553-3p 14 27
cgr-miR-142-3p MIMAT0023771 Cricetulus griseus miR-142-3p 14 27
rno-miR-3592 MIMAT0017895 Rattus norvegicus miR-3592 14 27
tgu-miR-142-3p MIMAT0026999 Taeniopygia guttata miR-142-3p 14 27
tgu-miR-338-5p MIMAT0017389 Taeniopygia guttata miR-338-5p 14 27
ssc-miR-505 MIMAT0013961 Sus scrofa miR-505 14 27
oan-miR-1398-3p MIMAT0026760 Ornithorhynchus anatinus miR-1398-3p 14 27
mdv2-miR-M30-5p MIMAT0004477 Mareks disease miR-M30-5p 14 27
>mmu-miR-6360 MIMAT0025103 Mus musculus miR-6360
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tagtgttg 8
||||||||
Sbjct: 1 tagtgttg 8
>gma-miR5785 MIMAT0023191 Glycine max miR5785
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tagtgttg 8
||||||||
Sbjct: 1 tagtgttg 8
>kshv-miR-K12-10a-3p MIMAT0002179 Kaposi sarcoma-associated
miR-K12-10a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tagtgttg 8
||||||||
Sbjct: 1 tagtgttg 8
>ata-miR2275c-5p MIMAT0037226 Aegilops tauschii miR2275c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agtgttg 8
|||||||
Sbjct: 1 agtgttg 7
>tch-miR-142 MIMAT0036470 Tupaia chinensis miR-142
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagtgtt 7
|||||||
Sbjct: 2 tagtgtt 8
>chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agtgttg 8
|||||||
Sbjct: 8 agtgttg 2
>ppc-miR-8299-5p MIMAT0033115 Pristionchus pacificus miR-8299-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagtgtt 7
|||||||
Sbjct: 1 tagtgtt 7
>prd-miR-5358b-5p MIMAT0030572 Panagrellus redivivus
miR-5358b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agtgttg 8
|||||||
Sbjct: 2 agtgttg 8
>ipu-miR-142 MIMAT0029419 Ictalurus punctatus miR-142
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagtgtt 7
|||||||
Sbjct: 2 tagtgtt 8
>ccr-miR-142-3p MIMAT0026223 Cyprinus carpio miR-142-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagtgtt 7
|||||||
Sbjct: 2 tagtgtt 8
>gga-miR-6553-3p MIMAT0025614 Gallus gallus miR-6553-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagtgtt 7
|||||||
Sbjct: 7 tagtgtt 1
>cgr-miR-142-3p MIMAT0023771 Cricetulus griseus miR-142-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagtgtt 7
|||||||
Sbjct: 2 tagtgtt 8
>rno-miR-3592 MIMAT0017895 Rattus norvegicus miR-3592
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agtgttg 8
|||||||
Sbjct: 2 agtgttg 8
>tgu-miR-142-3p MIMAT0026999 Taeniopygia guttata miR-142-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagtgtt 7
|||||||
Sbjct: 2 tagtgtt 8
>tgu-miR-338-5p MIMAT0017389 Taeniopygia guttata miR-338-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagtgtt 7
|||||||
Sbjct: 7 tagtgtt 1
>ssc-miR-505 MIMAT0013961 Sus scrofa miR-505
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agtgttg 8
|||||||
Sbjct: 8 agtgttg 2
>oan-miR-1398-3p MIMAT0026760 Ornithorhynchus anatinus
miR-1398-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agtgttg 8
|||||||
Sbjct: 1 agtgttg 7
>mdv2-miR-M30-5p MIMAT0004477 Mareks disease miR-M30-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agtgttg 8
|||||||
Sbjct: 7 agtgttg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 213
Number of extensions: 192
Number of successful extensions: 116
Number of sequences better than 100.0: 18
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 18
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
