BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-2
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-let-7e-3p MIMAT0035889 Capra hircus let-7e-3p 14 27
aca-miR-5438 MIMAT0022060 Anolis carolinensis miR-5438 14 27
bmo-miR-3340 MIMAT0015528 Bombyx mori miR-3340 14 27
dps-miR-2563-3p MIMAT0012389 Drosophila pseudoobscura miR-2563-3p 14 27
mml-let-7e-3p MIMAT0026792 Macaca mulatta let-7e-3p 14 27
dme-miR-960-3p MIMAT0020855 Drosophila melanogaster miR-960-3p 14 27
rrv-miR-rR1-2 MIMAT0004408 Rhesus monkey miR-rR1-2 14 27
rno-let-7e-3p MIMAT0004706 Rattus norvegicus let-7e-3p 14 27
mmu-let-7e-3p MIMAT0017016 Mus musculus let-7e-3p 14 27
hsa-let-7e-3p MIMAT0004485 Homo sapiens let-7e-3p 14 27
>chi-let-7e-3p MIMAT0035889 Capra hircus let-7e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatacgg 7
|||||||
Sbjct: 2 tatacgg 8
>aca-miR-5438 MIMAT0022060 Anolis carolinensis miR-5438
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatacgg 7
|||||||
Sbjct: 1 tatacgg 7
>bmo-miR-3340 MIMAT0015528 Bombyx mori miR-3340
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatacgg 7
|||||||
Sbjct: 1 tatacgg 7
>dps-miR-2563-3p MIMAT0012389 Drosophila pseudoobscura
miR-2563-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatacgg 7
|||||||
Sbjct: 1 tatacgg 7
>mml-let-7e-3p MIMAT0026792 Macaca mulatta let-7e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatacgg 7
|||||||
Sbjct: 2 tatacgg 8
>dme-miR-960-3p MIMAT0020855 Drosophila melanogaster miR-960-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatacgg 7
|||||||
Sbjct: 1 tatacgg 7
>rrv-miR-rR1-2 MIMAT0004408 Rhesus monkey miR-rR1-2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atacggc 8
|||||||
Sbjct: 1 atacggc 7
>rno-let-7e-3p MIMAT0004706 Rattus norvegicus let-7e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatacgg 7
|||||||
Sbjct: 2 tatacgg 8
>mmu-let-7e-3p MIMAT0017016 Mus musculus let-7e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatacgg 7
|||||||
Sbjct: 2 tatacgg 8
>hsa-let-7e-3p MIMAT0004485 Homo sapiens let-7e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatacgg 7
|||||||
Sbjct: 2 tatacgg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 70
Number of extensions: 60
Number of successful extensions: 25
Number of sequences better than 100.0: 10
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
