BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h8
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv1-miR-H8-5p MIMAT0012597 Herpes Simplex miR-H8-5p 16 6.9
oha-miR-190a-3p MIMAT0036773 Ophiophagus hannah miR-190a-3p 14 27
chi-miR-190a-3p MIMAT0036020 Capra hircus miR-190a-3p 14 27
ssa-miR-190a-3p MIMAT0032437 Salmo salar miR-190a-3p 14 27
oan-miR-7421-3p MIMAT0028993 Ornithorhynchus anatinus miR-7421-3p 14 27
oan-miR-135b-2-3p MIMAT0031114 Ornithorhynchus anatinus miR-135b... 14 27
hco-miR-5894b MIMAT0023400 Haemonchus contortus miR-5894b 14 27
hco-miR-5894a MIMAT0023334 Haemonchus contortus miR-5894a 14 27
aca-miR-190a-3p MIMAT0021822 Anolis carolinensis miR-190a-3p 14 27
aca-miR-135-1-3p MIMAT0021751 Anolis carolinensis miR-135-1-3p 14 27
pma-let-7b-3p MIMAT0019566 Petromyzon marinus let-7b-3p 14 27
tgu-miR-190-3p MIMAT0027015 Taeniopygia guttata miR-190-3p 14 27
mdo-miR-190a-3p MIMAT0026933 Monodelphis domestica miR-190a-3p 14 27
cte-miR-2686a-5p MIMAT0013535 Capitella teleta miR-2686a-5p 14 27
mml-miR-135a-1-3p MIMAT0031029 Macaca mulatta miR-135a-1-3p 14 27
oan-miR-190a-3p MIMAT0006844 Ornithorhynchus anatinus miR-190a-3p 14 27
dre-miR-135b-3p MIMAT0032006 Danio rerio miR-135b-3p 14 27
mml-miR-190a-3p MIMAT0026572 Macaca mulatta miR-190a-3p 14 27
gga-miR-135a-1-3p MIMAT0031036 Gallus gallus miR-135a-1-3p 14 27
gga-miR-190a-3p MIMAT0026525 Gallus gallus miR-190a-3p 14 27
rno-miR-190a-3p MIMAT0017145 Rattus norvegicus miR-190a-3p 14 27
hsa-miR-190a-3p MIMAT0026482 Homo sapiens miR-190a-3p 14 27
mmu-miR-190a-3p MIMAT0016998 Mus musculus miR-190a-3p 14 27
>hsv1-miR-H8-5p MIMAT0012597 Herpes Simplex miR-H8-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tatatagg 8
||||||||
Sbjct: 1 tatatagg 8
>oha-miR-190a-3p MIMAT0036773 Ophiophagus hannah miR-190a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatatag 7
|||||||
Sbjct: 8 tatatag 2
>chi-miR-190a-3p MIMAT0036020 Capra hircus miR-190a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatatag 7
|||||||
Sbjct: 7 tatatag 1
>ssa-miR-190a-3p MIMAT0032437 Salmo salar miR-190a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatatag 7
|||||||
Sbjct: 8 tatatag 2
>oan-miR-7421-3p MIMAT0028993 Ornithorhynchus anatinus
miR-7421-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatatag 7
|||||||
Sbjct: 2 tatatag 8
>oan-miR-135b-2-3p MIMAT0031114 Ornithorhynchus anatinus
miR-135b-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atatagg 8
|||||||
Sbjct: 1 atatagg 7
>hco-miR-5894b MIMAT0023400 Haemonchus contortus miR-5894b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atatagg 8
|||||||
Sbjct: 8 atatagg 2
>hco-miR-5894a MIMAT0023334 Haemonchus contortus miR-5894a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atatagg 8
|||||||
Sbjct: 7 atatagg 1
>aca-miR-190a-3p MIMAT0021822 Anolis carolinensis miR-190a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatatag 7
|||||||
Sbjct: 8 tatatag 2
>aca-miR-135-1-3p MIMAT0021751 Anolis carolinensis miR-135-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atatagg 8
|||||||
Sbjct: 1 atatagg 7
>pma-let-7b-3p MIMAT0019566 Petromyzon marinus let-7b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatatag 7
|||||||
Sbjct: 7 tatatag 1
>tgu-miR-190-3p MIMAT0027015 Taeniopygia guttata miR-190-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatatag 7
|||||||
Sbjct: 8 tatatag 2
>mdo-miR-190a-3p MIMAT0026933 Monodelphis domestica miR-190a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatatag 7
|||||||
Sbjct: 7 tatatag 1
>cte-miR-2686a-5p MIMAT0013535 Capitella teleta miR-2686a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atatagg 8
|||||||
Sbjct: 8 atatagg 2
>mml-miR-135a-1-3p MIMAT0031029 Macaca mulatta miR-135a-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atatagg 8
|||||||
Sbjct: 1 atatagg 7
>oan-miR-190a-3p MIMAT0006844 Ornithorhynchus anatinus
miR-190a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatatag 7
|||||||
Sbjct: 8 tatatag 2
>dre-miR-135b-3p MIMAT0032006 Danio rerio miR-135b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atatagg 8
|||||||
Sbjct: 1 atatagg 7
>mml-miR-190a-3p MIMAT0026572 Macaca mulatta miR-190a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatatag 7
|||||||
Sbjct: 7 tatatag 1
>gga-miR-135a-1-3p MIMAT0031036 Gallus gallus miR-135a-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atatagg 8
|||||||
Sbjct: 1 atatagg 7
>gga-miR-190a-3p MIMAT0026525 Gallus gallus miR-190a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatatag 7
|||||||
Sbjct: 7 tatatag 1
>rno-miR-190a-3p MIMAT0017145 Rattus norvegicus miR-190a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatatag 7
|||||||
Sbjct: 8 tatatag 2
>hsa-miR-190a-3p MIMAT0026482 Homo sapiens miR-190a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatatag 7
|||||||
Sbjct: 7 tatatag 1
>mmu-miR-190a-3p MIMAT0016998 Mus musculus miR-190a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatatag 7
|||||||
Sbjct: 8 tatatag 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 114
Number of extensions: 90
Number of successful extensions: 73
Number of sequences better than 100.0: 23
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 23
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)