BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hsv1-miR-h8
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hsv1-miR-H8-5p MIMAT0012597 Herpes Simplex miR-H8-5p                   16   6.9  
oha-miR-190a-3p MIMAT0036773 Ophiophagus hannah miR-190a-3p            14      27
chi-miR-190a-3p MIMAT0036020 Capra hircus miR-190a-3p                  14      27
ssa-miR-190a-3p MIMAT0032437 Salmo salar miR-190a-3p                   14      27
oan-miR-7421-3p MIMAT0028993 Ornithorhynchus anatinus miR-7421-3p      14      27
oan-miR-135b-2-3p MIMAT0031114 Ornithorhynchus anatinus miR-135b...    14      27
hco-miR-5894b MIMAT0023400 Haemonchus contortus miR-5894b              14      27
hco-miR-5894a MIMAT0023334 Haemonchus contortus miR-5894a              14      27
aca-miR-190a-3p MIMAT0021822 Anolis carolinensis miR-190a-3p           14      27
aca-miR-135-1-3p MIMAT0021751 Anolis carolinensis miR-135-1-3p         14      27
pma-let-7b-3p MIMAT0019566 Petromyzon marinus let-7b-3p                14      27
tgu-miR-190-3p MIMAT0027015 Taeniopygia guttata miR-190-3p             14      27
mdo-miR-190a-3p MIMAT0026933 Monodelphis domestica miR-190a-3p         14      27
cte-miR-2686a-5p MIMAT0013535 Capitella teleta miR-2686a-5p            14      27
mml-miR-135a-1-3p MIMAT0031029 Macaca mulatta miR-135a-1-3p            14      27
oan-miR-190a-3p MIMAT0006844 Ornithorhynchus anatinus miR-190a-3p      14      27
dre-miR-135b-3p MIMAT0032006 Danio rerio miR-135b-3p                   14      27
mml-miR-190a-3p MIMAT0026572 Macaca mulatta miR-190a-3p                14      27
gga-miR-135a-1-3p MIMAT0031036 Gallus gallus miR-135a-1-3p             14      27
gga-miR-190a-3p MIMAT0026525 Gallus gallus miR-190a-3p                 14      27
rno-miR-190a-3p MIMAT0017145 Rattus norvegicus miR-190a-3p             14      27
hsa-miR-190a-3p MIMAT0026482 Homo sapiens miR-190a-3p                  14      27
mmu-miR-190a-3p MIMAT0016998 Mus musculus miR-190a-3p                  14      27
>hsv1-miR-H8-5p MIMAT0012597 Herpes Simplex miR-H8-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tatatagg 8
         ||||||||
Sbjct: 1 tatatagg 8
>oha-miR-190a-3p MIMAT0036773 Ophiophagus hannah miR-190a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatatag 7
         |||||||
Sbjct: 8 tatatag 2
>chi-miR-190a-3p MIMAT0036020 Capra hircus miR-190a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatatag 7
         |||||||
Sbjct: 7 tatatag 1
>ssa-miR-190a-3p MIMAT0032437 Salmo salar miR-190a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatatag 7
         |||||||
Sbjct: 8 tatatag 2
>oan-miR-7421-3p MIMAT0028993 Ornithorhynchus anatinus
         miR-7421-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatatag 7
         |||||||
Sbjct: 2 tatatag 8
>oan-miR-135b-2-3p MIMAT0031114 Ornithorhynchus anatinus
         miR-135b-2-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atatagg 8
         |||||||
Sbjct: 1 atatagg 7
>hco-miR-5894b MIMAT0023400 Haemonchus contortus miR-5894b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atatagg 8
         |||||||
Sbjct: 8 atatagg 2
>hco-miR-5894a MIMAT0023334 Haemonchus contortus miR-5894a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atatagg 8
         |||||||
Sbjct: 7 atatagg 1
>aca-miR-190a-3p MIMAT0021822 Anolis carolinensis miR-190a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatatag 7
         |||||||
Sbjct: 8 tatatag 2
>aca-miR-135-1-3p MIMAT0021751 Anolis carolinensis miR-135-1-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atatagg 8
         |||||||
Sbjct: 1 atatagg 7
>pma-let-7b-3p MIMAT0019566 Petromyzon marinus let-7b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatatag 7
         |||||||
Sbjct: 7 tatatag 1
>tgu-miR-190-3p MIMAT0027015 Taeniopygia guttata miR-190-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatatag 7
         |||||||
Sbjct: 8 tatatag 2
>mdo-miR-190a-3p MIMAT0026933 Monodelphis domestica miR-190a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatatag 7
         |||||||
Sbjct: 7 tatatag 1
>cte-miR-2686a-5p MIMAT0013535 Capitella teleta miR-2686a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atatagg 8
         |||||||
Sbjct: 8 atatagg 2
>mml-miR-135a-1-3p MIMAT0031029 Macaca mulatta miR-135a-1-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atatagg 8
         |||||||
Sbjct: 1 atatagg 7
>oan-miR-190a-3p MIMAT0006844 Ornithorhynchus anatinus
         miR-190a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatatag 7
         |||||||
Sbjct: 8 tatatag 2
>dre-miR-135b-3p MIMAT0032006 Danio rerio miR-135b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atatagg 8
         |||||||
Sbjct: 1 atatagg 7
>mml-miR-190a-3p MIMAT0026572 Macaca mulatta miR-190a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatatag 7
         |||||||
Sbjct: 7 tatatag 1
>gga-miR-135a-1-3p MIMAT0031036 Gallus gallus miR-135a-1-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atatagg 8
         |||||||
Sbjct: 1 atatagg 7
>gga-miR-190a-3p MIMAT0026525 Gallus gallus miR-190a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatatag 7
         |||||||
Sbjct: 7 tatatag 1
>rno-miR-190a-3p MIMAT0017145 Rattus norvegicus miR-190a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatatag 7
         |||||||
Sbjct: 8 tatatag 2
>hsa-miR-190a-3p MIMAT0026482 Homo sapiens miR-190a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatatag 7
         |||||||
Sbjct: 7 tatatag 1
>mmu-miR-190a-3p MIMAT0016998 Mus musculus miR-190a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatatag 7
         |||||||
Sbjct: 8 tatatag 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 114
Number of extensions: 90
Number of successful extensions: 73
Number of sequences better than 100.0: 23
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 23
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)