BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r43.1-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bta-miR-2291 MIMAT0011799 Bos taurus miR-2291 14 20
ssc-miR-9849-5p MIMAT0037068 Sus scrofa miR-9849-5p 12 80
oha-miR-34a-3p MIMAT0036908 Ophiophagus hannah miR-34a-3p 12 80
chi-miR-374b-3p MIMAT0036183 Capra hircus miR-374b-3p 12 80
chi-miR-374a-3p MIMAT0036181 Capra hircus miR-374a-3p 12 80
bra-miR9553-3p MIMAT0035660 Brassica rapa miR9553-3p 12 80
nve-miR-9442 MIMAT0035403 Nematostella vectensis miR-9442 12 80
efu-miR-9298 MIMAT0034961 Eptesicus fuscus miR-9298 12 80
efu-miR-9237c MIMAT0034840 Eptesicus fuscus miR-9237c 12 80
efu-miR-9201a MIMAT0034785 Eptesicus fuscus miR-9201a 12 80
pxy-miR-8518 MIMAT0033756 Plutella xylostella miR-8518 12 80
ppc-miR-8362-5p MIMAT0033290 Pristionchus pacificus miR-8362-5p 12 80
ppc-miR-8271-5p MIMAT0033035 Pristionchus pacificus miR-8271-5p 12 80
ppc-miR-8223-5p MIMAT0032884 Pristionchus pacificus miR-8223-5p 12 80
bbe-miR-29a-5p MIMAT0031662 Branchiostoma belcheri miR-29a-5p 12 80
hsa-miR-8075 MIMAT0031002 Homo sapiens miR-8075 12 80
aja-miR-3074 MIMAT0031145 Artibeus jamaicensis miR-3074 12 80
ptc-miR6470 MIMAT0025209 Populus trichocarpa miR6470 12 80
osa-miR6247 MIMAT0024868 Oryza sativa miR6247 12 80
ggo-miR-374a MIMAT0024169 Gorilla gorilla miR-374a 12 80
cgr-miR-374-3p MIMAT0023940 Cricetulus griseus miR-374-3p 12 80
osa-miR5510 MIMAT0022143 Oryza sativa miR5510 12 80
cel-miR-4931 MIMAT0020137 Caenorhabditis elegans miR-4931 12 80
hsa-miR-4502 MIMAT0019038 Homo sapiens miR-4502 12 80
rno-miR-3074 MIMAT0017815 Rattus norvegicus miR-3074 12 80
aly-miR3434-5p MIMAT0017697 Arabidopsis lyrata miR3434-5p 12 80
bmo-miR-3216 MIMAT0015396 Bombyx mori miR-3216 12 80
hsa-miR-3161 MIMAT0015035 Homo sapiens miR-3161 12 80
hsa-miR-3074-3p MIMAT0015027 Homo sapiens miR-3074-3p 12 80
mmu-miR-3074-1-3p MIMAT0014857 Mus musculus miR-3074-1-3p 12 80
ssc-miR-374b-3p MIMAT0017378 Sus scrofa miR-374b-3p 12 80
ssc-miR-374a-3p MIMAT0013914 Sus scrofa miR-374a-3p 12 80
mtr-miR2620 MIMAT0013340 Medicago truncatula miR2620 12 80
bta-miR-2439-3p MIMAT0012014 Bos taurus miR-2439-3p 12 80
sme-miR-2149-3p MIMAT0012134 Schmidtea mediterranea miR-2149-3p 12 80
osa-miR2095-5p MIMAT0010054 Oryza sativa miR2095-5p 12 80
spu-miR-2008 MIMAT0009749 Strongylocentrotus purpuratus miR-2008 12 80
sko-miR-2008 MIMAT0009738 Saccoglossus kowalevskii miR-2008 12 80
bfl-miR-29a-5p MIMAT0019139 Branchiostoma floridae miR-29a-5p 12 80
tca-miR-2c-5p MIMAT0019093 Tribolium castaneum miR-2c-5p 12 80
mml-miR-374a-3p MIMAT0026859 Macaca mulatta miR-374a-3p 12 80
mdo-miR-1547-5p MIMAT0006147 Monodelphis domestica miR-1547-5p 12 80
ppt-miR1047-3p MIMAT0005162 Physcomitrella patens miR1047-3p 12 80
gga-miR-34a-3p MIMAT0026535 Gallus gallus miR-34a-3p 12 80
hsa-miR-374a-3p MIMAT0004688 Homo sapiens miR-374a-3p 12 80
hsa-miR-34a-3p MIMAT0004557 Homo sapiens miR-34a-3p 12 80
>bta-miR-2291 MIMAT0011799 Bos taurus miR-2291
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatcagc 7
|||||||
Sbjct: 7 tatcagc 1
>ssc-miR-9849-5p MIMAT0037068 Sus scrofa miR-9849-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcagc 7
||||||
Sbjct: 7 atcagc 2
>oha-miR-34a-3p MIMAT0036908 Ophiophagus hannah miR-34a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atcagc 7
||||||
Sbjct: 3 atcagc 8
>chi-miR-374b-3p MIMAT0036183 Capra hircus miR-374b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 3 tatcag 8
>chi-miR-374a-3p MIMAT0036181 Capra hircus miR-374a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 3 tatcag 8
>bra-miR9553-3p MIMAT0035660 Brassica rapa miR9553-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atcagc 7
||||||
Sbjct: 3 atcagc 8
>nve-miR-9442 MIMAT0035403 Nematostella vectensis miR-9442
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 3 tatcag 8
>efu-miR-9298 MIMAT0034961 Eptesicus fuscus miR-9298
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcagc 7
||||||
Sbjct: 6 atcagc 1
>efu-miR-9237c MIMAT0034840 Eptesicus fuscus miR-9237c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 1 tatcag 6
>efu-miR-9201a MIMAT0034785 Eptesicus fuscus miR-9201a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atcagc 7
||||||
Sbjct: 1 atcagc 6
>pxy-miR-8518 MIMAT0033756 Plutella xylostella miR-8518
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcagc 7
||||||
Sbjct: 8 atcagc 3
>ppc-miR-8362-5p MIMAT0033290 Pristionchus pacificus miR-8362-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcagc 7
||||||
Sbjct: 8 atcagc 3
>ppc-miR-8271-5p MIMAT0033035 Pristionchus pacificus miR-8271-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 1 tatcag 6
>ppc-miR-8223-5p MIMAT0032884 Pristionchus pacificus miR-8223-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcagc 7
||||||
Sbjct: 8 atcagc 3
>bbe-miR-29a-5p MIMAT0031662 Branchiostoma belcheri miR-29a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcagc 7
||||||
Sbjct: 6 atcagc 1
>hsa-miR-8075 MIMAT0031002 Homo sapiens miR-8075
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcagc 7
||||||
Sbjct: 7 atcagc 2
>aja-miR-3074 MIMAT0031145 Artibeus jamaicensis miR-3074
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 3 tatcag 8
>ptc-miR6470 MIMAT0025209 Populus trichocarpa miR6470
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tatcag 6
||||||
Sbjct: 8 tatcag 3
>osa-miR6247 MIMAT0024868 Oryza sativa miR6247
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcagc 7
||||||
Sbjct: 8 atcagc 3
>ggo-miR-374a MIMAT0024169 Gorilla gorilla miR-374a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 3 tatcag 8
>cgr-miR-374-3p MIMAT0023940 Cricetulus griseus miR-374-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 3 tatcag 8
>osa-miR5510 MIMAT0022143 Oryza sativa miR5510
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcagc 7
||||||
Sbjct: 8 atcagc 3
>cel-miR-4931 MIMAT0020137 Caenorhabditis elegans miR-4931
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcagc 7
||||||
Sbjct: 8 atcagc 3
>hsa-miR-4502 MIMAT0019038 Homo sapiens miR-4502
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcagc 7
||||||
Sbjct: 6 atcagc 1
>rno-miR-3074 MIMAT0017815 Rattus norvegicus miR-3074
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 3 tatcag 8
>aly-miR3434-5p MIMAT0017697 Arabidopsis lyrata miR3434-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcagc 7
||||||
Sbjct: 6 atcagc 1
>bmo-miR-3216 MIMAT0015396 Bombyx mori miR-3216
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 1 tatcag 6
>hsa-miR-3161 MIMAT0015035 Homo sapiens miR-3161
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tatcag 6
||||||
Sbjct: 6 tatcag 1
>hsa-miR-3074-3p MIMAT0015027 Homo sapiens miR-3074-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 3 tatcag 8
>mmu-miR-3074-1-3p MIMAT0014857 Mus musculus miR-3074-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 3 tatcag 8
>ssc-miR-374b-3p MIMAT0017378 Sus scrofa miR-374b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 3 tatcag 8
>ssc-miR-374a-3p MIMAT0013914 Sus scrofa miR-374a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 3 tatcag 8
>mtr-miR2620 MIMAT0013340 Medicago truncatula miR2620
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tatcag 6
||||||
Sbjct: 8 tatcag 3
>bta-miR-2439-3p MIMAT0012014 Bos taurus miR-2439-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 1 tatcag 6
>sme-miR-2149-3p MIMAT0012134 Schmidtea mediterranea miR-2149-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atcagc 7
||||||
Sbjct: 1 atcagc 6
>osa-miR2095-5p MIMAT0010054 Oryza sativa miR2095-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tatcag 6
||||||
Sbjct: 6 tatcag 1
>spu-miR-2008 MIMAT0009749 Strongylocentrotus purpuratus
miR-2008
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atcagc 7
||||||
Sbjct: 1 atcagc 6
>sko-miR-2008 MIMAT0009738 Saccoglossus kowalevskii miR-2008
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atcagc 7
||||||
Sbjct: 1 atcagc 6
>bfl-miR-29a-5p MIMAT0019139 Branchiostoma floridae miR-29a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atcagc 7
||||||
Sbjct: 6 atcagc 1
>tca-miR-2c-5p MIMAT0019093 Tribolium castaneum miR-2c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 3 tatcag 8
>mml-miR-374a-3p MIMAT0026859 Macaca mulatta miR-374a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 3 tatcag 8
>mdo-miR-1547-5p MIMAT0006147 Monodelphis domestica miR-1547-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 1 tatcag 6
>ppt-miR1047-3p MIMAT0005162 Physcomitrella patens miR1047-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atcagc 7
||||||
Sbjct: 3 atcagc 8
>gga-miR-34a-3p MIMAT0026535 Gallus gallus miR-34a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atcagc 7
||||||
Sbjct: 3 atcagc 8
>hsa-miR-374a-3p MIMAT0004688 Homo sapiens miR-374a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tatcag 6
||||||
Sbjct: 3 tatcag 8
>hsa-miR-34a-3p MIMAT0004557 Homo sapiens miR-34a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atcagc 7
||||||
Sbjct: 3 atcagc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 78
Number of extensions: 77
Number of successful extensions: 46
Number of sequences better than 100.0: 46
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 46
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
