BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-13-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gga-miR-6565-5p MIMAT0025635 Gallus gallus miR-6565-5p 16 6.9
mtr-miR5244 MIMAT0021240 Medicago truncatula miR5244 16 6.9
mghv-miR-M1-13-3p MIMAT0018173 Mouse gammaherpesvirus miR-M1-13-3p 16 6.9
dvi-miR-9538-3p MIMAT0035619 Drosophila virilis miR-9538-3p 14 27
cfa-miR-8817 MIMAT0034307 Canis familiaris miR-8817 14 27
atr-miR8600 MIMAT0033889 Amborella trichopoda miR8600 14 27
stu-miR1886i-5p MIMAT0030925 Solanum tuberosum miR1886i-5p 14 27
stu-miR7980a MIMAT0030847 Solanum tuberosum miR7980a 14 27
cbr-miR-7585 MIMAT0029588 Caenorhabditis briggsae miR-7585 14 27
cbr-miR-7584 MIMAT0029587 Caenorhabditis briggsae miR-7584 14 27
mdo-miR-7398g-3p MIMAT0028931 Monodelphis domestica miR-7398g-3p 14 27
mmu-miR-5119 MIMAT0020627 Mus musculus miR-5119 14 27
aly-miR3444b MIMAT0017920 Arabidopsis lyrata miR3444b 14 27
aly-miR3444a-3p MIMAT0017722 Arabidopsis lyrata miR3444a-3p 14 27
hvt-miR-H18-3p MIMAT0012875 Herpesvirus of miR-H18-3p 14 27
dsi-miR-977 MIMAT0012423 Drosophila simulans miR-977 14 27
gga-miR-1452 MIMAT0007328 Gallus gallus miR-1452 14 27
dme-miR-977-3p MIMAT0005493 Drosophila melanogaster miR-977-3p 14 27
ptr-miR-216a MIMAT0002559 Pan troglodytes miR-216a 14 27
>gga-miR-6565-5p MIMAT0025635 Gallus gallus miR-6565-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tatctcat 8
||||||||
Sbjct: 8 tatctcat 1
>mtr-miR5244 MIMAT0021240 Medicago truncatula miR5244
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tatctcat 8
||||||||
Sbjct: 1 tatctcat 8
>mghv-miR-M1-13-3p MIMAT0018173 Mouse gammaherpesvirus
miR-M1-13-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tatctcat 8
||||||||
Sbjct: 1 tatctcat 8
>dvi-miR-9538-3p MIMAT0035619 Drosophila virilis miR-9538-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atctcat 8
|||||||
Sbjct: 7 atctcat 1
>cfa-miR-8817 MIMAT0034307 Canis familiaris miR-8817
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatctca 7
|||||||
Sbjct: 8 tatctca 2
>atr-miR8600 MIMAT0033889 Amborella trichopoda miR8600
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atctcat 8
|||||||
Sbjct: 1 atctcat 7
>stu-miR1886i-5p MIMAT0030925 Solanum tuberosum miR1886i-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atctcat 8
|||||||
Sbjct: 7 atctcat 1
>stu-miR7980a MIMAT0030847 Solanum tuberosum miR7980a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atctcat 8
|||||||
Sbjct: 7 atctcat 1
>cbr-miR-7585 MIMAT0029588 Caenorhabditis briggsae miR-7585
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatctca 7
|||||||
Sbjct: 7 tatctca 1
>cbr-miR-7584 MIMAT0029587 Caenorhabditis briggsae miR-7584
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatctca 7
|||||||
Sbjct: 7 tatctca 1
>mdo-miR-7398g-3p MIMAT0028931 Monodelphis domestica
miR-7398g-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatctca 7
|||||||
Sbjct: 1 tatctca 7
>mmu-miR-5119 MIMAT0020627 Mus musculus miR-5119
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atctcat 8
|||||||
Sbjct: 2 atctcat 8
>aly-miR3444b MIMAT0017920 Arabidopsis lyrata miR3444b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atctcat 8
|||||||
Sbjct: 1 atctcat 7
>aly-miR3444a-3p MIMAT0017722 Arabidopsis lyrata miR3444a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atctcat 8
|||||||
Sbjct: 2 atctcat 8
>hvt-miR-H18-3p MIMAT0012875 Herpesvirus of miR-H18-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatctca 7
|||||||
Sbjct: 8 tatctca 2
>dsi-miR-977 MIMAT0012423 Drosophila simulans miR-977
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatctca 7
|||||||
Sbjct: 7 tatctca 1
>gga-miR-1452 MIMAT0007328 Gallus gallus miR-1452
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatctca 7
|||||||
Sbjct: 8 tatctca 2
>dme-miR-977-3p MIMAT0005493 Drosophila melanogaster miR-977-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatctca 7
|||||||
Sbjct: 7 tatctca 1
>ptr-miR-216a MIMAT0002559 Pan troglodytes miR-216a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatctca 7
|||||||
Sbjct: 2 tatctca 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 309
Number of extensions: 287
Number of successful extensions: 272
Number of sequences better than 100.0: 19
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
