BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-2-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppe-miR6292 MIMAT0027327 Prunus persica miR6292 16 6.9
mcmv-miR-M44-1 MIMAT0005546 Mouse cytomegalovirus miR-M44-1 16 6.9
rlcv-miR-rL1-2-3p MIMAT0003428 Rhesus lymphocryptovirus miR-rL1-... 16 6.9
ebv-miR-BHRF1-2-3p MIMAT0000997 Epstein Barr miR-BHRF1-2-3p 16 6.9
sly-miR9476-3p MIMAT0035470 Solanum lycopersicum miR9476-3p 14 27
bdi-miR7776-3p.1 MIMAT0030305 Brachypodium distachyon miR7776-3p.1 14 27
mdo-miR-7312-5p MIMAT0028624 Monodelphis domestica miR-7312-5p 14 27
mdo-miR-7302-3p MIMAT0028597 Monodelphis domestica miR-7302-3p 14 27
mml-miR-7207-5p MIMAT0028380 Macaca mulatta miR-7207-5p 14 27
dme-miR-4911-3p MIMAT0020504 Drosophila melanogaster miR-4911-3p 14 27
hsa-miR-4662a-3p MIMAT0019732 Homo sapiens miR-4662a-3p 14 27
cin-miR-4083-3p MIMAT0016656 Ciona intestinalis miR-4083-3p 14 27
aly-miR773b-5p MIMAT0017683 Arabidopsis lyrata miR773b-5p 14 27
ath-miR2938 MIMAT0014142 Arabidopsis thaliana miR2938 14 27
hvt-miR-H15-3p MIMAT0012869 Herpesvirus of miR-H15-3p 14 27
bmo-miR-2826 MIMAT0013737 Bombyx mori miR-2826 14 27
bmo-miR-2738 MIMAT0012616 Bombyx mori miR-2738 14 27
dsi-miR-2582a-3p MIMAT0012520 Drosophila simulans miR-2582a-3p 14 27
sme-miR-2161-5p MIMAT0012152 Schmidtea mediterranea miR-2161-5p 14 27
cel-miR-787-5p MIMAT0020348 Caenorhabditis elegans miR-787-5p 14 27
>ppe-miR6292 MIMAT0027327 Prunus persica miR6292
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tatctttt 8
||||||||
Sbjct: 1 tatctttt 8
>mcmv-miR-M44-1 MIMAT0005546 Mouse cytomegalovirus miR-M44-1
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tatctttt 8
||||||||
Sbjct: 1 tatctttt 8
>rlcv-miR-rL1-2-3p MIMAT0003428 Rhesus lymphocryptovirus
miR-rL1-2-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tatctttt 8
||||||||
Sbjct: 1 tatctttt 8
>ebv-miR-BHRF1-2-3p MIMAT0000997 Epstein Barr miR-BHRF1-2-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tatctttt 8
||||||||
Sbjct: 1 tatctttt 8
>sly-miR9476-3p MIMAT0035470 Solanum lycopersicum miR9476-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atctttt 8
|||||||
Sbjct: 8 atctttt 2
>bdi-miR7776-3p.1 MIMAT0030305 Brachypodium distachyon
miR7776-3p.1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatcttt 7
|||||||
Sbjct: 7 tatcttt 1
>mdo-miR-7312-5p MIMAT0028624 Monodelphis domestica miR-7312-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatcttt 7
|||||||
Sbjct: 7 tatcttt 1
>mdo-miR-7302-3p MIMAT0028597 Monodelphis domestica miR-7302-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatcttt 7
|||||||
Sbjct: 1 tatcttt 7
>mml-miR-7207-5p MIMAT0028380 Macaca mulatta miR-7207-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atctttt 8
|||||||
Sbjct: 1 atctttt 7
>dme-miR-4911-3p MIMAT0020504 Drosophila melanogaster
miR-4911-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atctttt 8
|||||||
Sbjct: 1 atctttt 7
>hsa-miR-4662a-3p MIMAT0019732 Homo sapiens miR-4662a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatcttt 7
|||||||
Sbjct: 7 tatcttt 1
>cin-miR-4083-3p MIMAT0016656 Ciona intestinalis miR-4083-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatcttt 7
|||||||
Sbjct: 1 tatcttt 7
>aly-miR773b-5p MIMAT0017683 Arabidopsis lyrata miR773b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatcttt 7
|||||||
Sbjct: 1 tatcttt 7
>ath-miR2938 MIMAT0014142 Arabidopsis thaliana miR2938
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atctttt 8
|||||||
Sbjct: 2 atctttt 8
>hvt-miR-H15-3p MIMAT0012869 Herpesvirus of miR-H15-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatcttt 7
|||||||
Sbjct: 8 tatcttt 2
>bmo-miR-2826 MIMAT0013737 Bombyx mori miR-2826
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atctttt 8
|||||||
Sbjct: 7 atctttt 1
>bmo-miR-2738 MIMAT0012616 Bombyx mori miR-2738
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atctttt 8
|||||||
Sbjct: 1 atctttt 7
>dsi-miR-2582a-3p MIMAT0012520 Drosophila simulans miR-2582a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatcttt 7
|||||||
Sbjct: 1 tatcttt 7
>sme-miR-2161-5p MIMAT0012152 Schmidtea mediterranea miR-2161-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatcttt 7
|||||||
Sbjct: 2 tatcttt 8
>cel-miR-787-5p MIMAT0020348 Caenorhabditis elegans miR-787-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatcttt 7
|||||||
Sbjct: 7 tatcttt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 141
Number of extensions: 117
Number of successful extensions: 102
Number of sequences better than 100.0: 20
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 20
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)