BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rlcv-miR-rl1-2-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ppe-miR6292 MIMAT0027327 Prunus persica miR6292                        16   6.9  
mcmv-miR-M44-1 MIMAT0005546 Mouse cytomegalovirus miR-M44-1            16   6.9  
rlcv-miR-rL1-2-3p MIMAT0003428 Rhesus lymphocryptovirus miR-rL1-...    16   6.9  
ebv-miR-BHRF1-2-3p MIMAT0000997 Epstein Barr miR-BHRF1-2-3p            16   6.9  
sly-miR9476-3p MIMAT0035470 Solanum lycopersicum miR9476-3p            14      27
bdi-miR7776-3p.1 MIMAT0030305 Brachypodium distachyon miR7776-3p.1     14      27
mdo-miR-7312-5p MIMAT0028624 Monodelphis domestica miR-7312-5p         14      27
mdo-miR-7302-3p MIMAT0028597 Monodelphis domestica miR-7302-3p         14      27
mml-miR-7207-5p MIMAT0028380 Macaca mulatta miR-7207-5p                14      27
dme-miR-4911-3p MIMAT0020504 Drosophila melanogaster miR-4911-3p       14      27
hsa-miR-4662a-3p MIMAT0019732 Homo sapiens miR-4662a-3p                14      27
cin-miR-4083-3p MIMAT0016656 Ciona intestinalis miR-4083-3p            14      27
aly-miR773b-5p MIMAT0017683 Arabidopsis lyrata miR773b-5p              14      27
ath-miR2938 MIMAT0014142 Arabidopsis thaliana miR2938                  14      27
hvt-miR-H15-3p MIMAT0012869 Herpesvirus of miR-H15-3p                  14      27
bmo-miR-2826 MIMAT0013737 Bombyx mori miR-2826                         14      27
bmo-miR-2738 MIMAT0012616 Bombyx mori miR-2738                         14      27
dsi-miR-2582a-3p MIMAT0012520 Drosophila simulans miR-2582a-3p         14      27
sme-miR-2161-5p MIMAT0012152 Schmidtea mediterranea miR-2161-5p        14      27
cel-miR-787-5p MIMAT0020348 Caenorhabditis elegans miR-787-5p          14      27
>ppe-miR6292 MIMAT0027327 Prunus persica miR6292
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tatctttt 8
         ||||||||
Sbjct: 1 tatctttt 8
>mcmv-miR-M44-1 MIMAT0005546 Mouse cytomegalovirus miR-M44-1
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tatctttt 8
         ||||||||
Sbjct: 1 tatctttt 8
>rlcv-miR-rL1-2-3p MIMAT0003428 Rhesus lymphocryptovirus
         miR-rL1-2-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tatctttt 8
         ||||||||
Sbjct: 1 tatctttt 8
>ebv-miR-BHRF1-2-3p MIMAT0000997 Epstein Barr miR-BHRF1-2-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tatctttt 8
         ||||||||
Sbjct: 1 tatctttt 8
>sly-miR9476-3p MIMAT0035470 Solanum lycopersicum miR9476-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atctttt 8
         |||||||
Sbjct: 8 atctttt 2
>bdi-miR7776-3p.1 MIMAT0030305 Brachypodium distachyon
         miR7776-3p.1
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatcttt 7
         |||||||
Sbjct: 7 tatcttt 1
>mdo-miR-7312-5p MIMAT0028624 Monodelphis domestica miR-7312-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatcttt 7
         |||||||
Sbjct: 7 tatcttt 1
>mdo-miR-7302-3p MIMAT0028597 Monodelphis domestica miR-7302-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatcttt 7
         |||||||
Sbjct: 1 tatcttt 7
>mml-miR-7207-5p MIMAT0028380 Macaca mulatta miR-7207-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atctttt 8
         |||||||
Sbjct: 1 atctttt 7
>dme-miR-4911-3p MIMAT0020504 Drosophila melanogaster
         miR-4911-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atctttt 8
         |||||||
Sbjct: 1 atctttt 7
>hsa-miR-4662a-3p MIMAT0019732 Homo sapiens miR-4662a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatcttt 7
         |||||||
Sbjct: 7 tatcttt 1
>cin-miR-4083-3p MIMAT0016656 Ciona intestinalis miR-4083-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatcttt 7
         |||||||
Sbjct: 1 tatcttt 7
>aly-miR773b-5p MIMAT0017683 Arabidopsis lyrata miR773b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatcttt 7
         |||||||
Sbjct: 1 tatcttt 7
>ath-miR2938 MIMAT0014142 Arabidopsis thaliana miR2938
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atctttt 8
         |||||||
Sbjct: 2 atctttt 8
>hvt-miR-H15-3p MIMAT0012869 Herpesvirus of miR-H15-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatcttt 7
         |||||||
Sbjct: 8 tatcttt 2
>bmo-miR-2826 MIMAT0013737 Bombyx mori miR-2826
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atctttt 8
         |||||||
Sbjct: 7 atctttt 1
>bmo-miR-2738 MIMAT0012616 Bombyx mori miR-2738
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atctttt 8
         |||||||
Sbjct: 1 atctttt 7
>dsi-miR-2582a-3p MIMAT0012520 Drosophila simulans miR-2582a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatcttt 7
         |||||||
Sbjct: 1 tatcttt 7
>sme-miR-2161-5p MIMAT0012152 Schmidtea mediterranea miR-2161-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatcttt 7
         |||||||
Sbjct: 2 tatcttt 8
>cel-miR-787-5p MIMAT0020348 Caenorhabditis elegans miR-787-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatcttt 7
         |||||||
Sbjct: 7 tatcttt 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 141
Number of extensions: 117
Number of successful extensions: 102
Number of sequences better than 100.0: 20
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 20
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)