BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-12
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tch-miR-9771m MIMAT0036599 Tupaia chinensis miR-9771m 14 27
chi-miR-411b-3p MIMAT0036216 Capra hircus miR-411b-3p 14 27
gra-miR8724 MIMAT0034117 Gossypium raimondii miR8724 14 27
pxy-miR-8536b-5p MIMAT0033789 Plutella xylostella miR-8536b-5p 14 27
sma-miR-8436-5p MIMAT0033576 Schistosoma mansoni miR-8436-5p 14 27
ppc-miR-2238g-3p MIMAT0032895 Pristionchus pacificus miR-2238g-3p 14 27
bdi-miR7736-3p MIMAT0030209 Brachypodium distachyon miR7736-3p 14 27
hsa-miR-6719-3p MIMAT0025850 Homo sapiens miR-6719-3p 14 27
gga-miR-6660-3p MIMAT0025761 Gallus gallus miR-6660-3p 14 27
ptc-miR6451 MIMAT0025255 Populus trichocarpa miR6451 14 27
aca-miR-5410-3p MIMAT0022028 Anolis carolinensis miR-5410-3p 14 27
oar-miR-411b-3p MIMAT0019256 Ovis aries miR-411b-3p 14 27
bmo-miR-3203-3p MIMAT0015380 Bombyx mori miR-3203-3p 14 27
osa-miR816 MIMAT0004061 Oryza sativa miR816 14 27
>tch-miR-9771m MIMAT0036599 Tupaia chinensis miR-9771m
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatgtca 7
|||||||
Sbjct: 1 tatgtca 7
>chi-miR-411b-3p MIMAT0036216 Capra hircus miR-411b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatgtca 7
|||||||
Sbjct: 1 tatgtca 7
>gra-miR8724 MIMAT0034117 Gossypium raimondii miR8724
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgtcag 8
|||||||
Sbjct: 8 atgtcag 2
>pxy-miR-8536b-5p MIMAT0033789 Plutella xylostella miR-8536b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatgtca 7
|||||||
Sbjct: 8 tatgtca 2
>sma-miR-8436-5p MIMAT0033576 Schistosoma mansoni miR-8436-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatgtca 7
|||||||
Sbjct: 2 tatgtca 8
>ppc-miR-2238g-3p MIMAT0032895 Pristionchus pacificus
miR-2238g-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atgtcag 8
|||||||
Sbjct: 2 atgtcag 8
>bdi-miR7736-3p MIMAT0030209 Brachypodium distachyon miR7736-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatgtca 7
|||||||
Sbjct: 7 tatgtca 1
>hsa-miR-6719-3p MIMAT0025850 Homo sapiens miR-6719-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgtcag 8
|||||||
Sbjct: 8 atgtcag 2
>gga-miR-6660-3p MIMAT0025761 Gallus gallus miR-6660-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgtcag 8
|||||||
Sbjct: 8 atgtcag 2
>ptc-miR6451 MIMAT0025255 Populus trichocarpa miR6451
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atgtcag 8
|||||||
Sbjct: 1 atgtcag 7
>aca-miR-5410-3p MIMAT0022028 Anolis carolinensis miR-5410-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgtcag 8
|||||||
Sbjct: 7 atgtcag 1
>oar-miR-411b-3p MIMAT0019256 Ovis aries miR-411b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tatgtca 7
|||||||
Sbjct: 1 tatgtca 7
>bmo-miR-3203-3p MIMAT0015380 Bombyx mori miR-3203-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atgtcag 8
|||||||
Sbjct: 1 atgtcag 7
>osa-miR816 MIMAT0004061 Oryza sativa miR816
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tatgtca 7
|||||||
Sbjct: 8 tatgtca 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 165
Number of extensions: 151
Number of successful extensions: 127
Number of sequences better than 100.0: 14
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
