BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rcmv-miR-r111.1-1
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

oha-miR-455-5p MIMAT0036931 Ophiophagus hannah miR-455-5p              14      27
chi-miR-455-5p MIMAT0036241 Capra hircus miR-455-5p                    14      27
ppc-miR-8299-3p MIMAT0033116 Pristionchus pacificus miR-8299-3p        14      27
ath-miR8173 MIMAT0032772 Arabidopsis thaliana miR8173                  14      27
ssa-miR-8157-5p MIMAT0032736 Salmo salar miR-8157-5p                   14      27
ssa-miR-455-5p MIMAT0032643 Salmo salar miR-455-5p                     14      27
stu-miR164-3p MIMAT0030973 Solanum tuberosum miR164-3p                 14      27
ipu-miR-455b MIMAT0029513 Ictalurus punctatus miR-455b                 14      27
ipu-miR-455a MIMAT0029512 Ictalurus punctatus miR-455a                 14      27
gga-miR-7472-5p MIMAT0029098 Gallus gallus miR-7472-5p                 14      27
ccr-miR-455 MIMAT0026301 Cyprinus carpio miR-455                       14      27
cgr-miR-455-5p MIMAT0023964 Cricetulus griseus miR-455-5p              14      27
ola-miR-455-5p MIMAT0022607 Oryzias latipes miR-455-5p                 14      27
bra-miR5723 MIMAT0023022 Brassica rapa miR5723                         14      27
cin-miR-5601-5p MIMAT0022325 Ciona intestinalis miR-5601-5p            14      27
aca-miR-455-5p MIMAT0021964 Anolis carolinensis miR-455-5p             14      27
ppy-miR-455-5p MIMAT0015899 Pongo pygmaeus miR-455-5p                  14      27
tgu-miR-455-5p MIMAT0014655 Taeniopygia guttata miR-455-5p             14      27
ssc-miR-455-5p MIMAT0022957 Sus scrofa miR-455-5p                      14      27
mdo-miR-455-5p MIMAT0012752 Monodelphis domestica miR-455-5p           14      27
dre-miR-455-2-5p MIMAT0011302 Danio rerio miR-455-2-5p                 14      27
cfa-miR-455 MIMAT0006603 Canis familiaris miR-455                      14      27
mml-miR-455-5p MIMAT0006339 Macaca mulatta miR-455-5p                  14      27
rno-miR-455-5p MIMAT0005316 Rattus norvegicus miR-455-5p               14      27
bta-miR-455-5p MIMAT0003835 Bos taurus miR-455-5p                      14      27
xtr-miR-455 MIMAT0003641 Xenopus tropicalis miR-455                    14      27
mmu-miR-455-5p MIMAT0003485 Mus musculus miR-455-5p                    14      27
gga-miR-455-5p MIMAT0003364 Gallus gallus miR-455-5p                   14      27
hsa-miR-455-5p MIMAT0003150 Homo sapiens miR-455-5p                    14      27
rno-miR-1-5p MIMAT0003162 Rattus norvegicus miR-1-5p                   14      27
tni-miR-455 MIMAT0003029 Tetraodon nigroviridis miR-455                14      27
fru-miR-455 MIMAT0003028 Fugu rubripes miR-455                         14      27
dre-miR-455-5p MIMAT0001879 Danio rerio miR-455-5p                     14      27
>oha-miR-455-5p MIMAT0036931 Ophiophagus hannah miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>chi-miR-455-5p MIMAT0036241 Capra hircus miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>ppc-miR-8299-3p MIMAT0033116 Pristionchus pacificus miR-8299-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 8 tatgtgc 2
>ath-miR8173 MIMAT0032772 Arabidopsis thaliana miR8173
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atgtgct 8
         |||||||
Sbjct: 1 atgtgct 7
>ssa-miR-8157-5p MIMAT0032736 Salmo salar miR-8157-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atgtgct 8
         |||||||
Sbjct: 8 atgtgct 2
>ssa-miR-455-5p MIMAT0032643 Salmo salar miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>stu-miR164-3p MIMAT0030973 Solanum tuberosum miR164-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atgtgct 8
         |||||||
Sbjct: 2 atgtgct 8
>ipu-miR-455b MIMAT0029513 Ictalurus punctatus miR-455b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>ipu-miR-455a MIMAT0029512 Ictalurus punctatus miR-455a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>gga-miR-7472-5p MIMAT0029098 Gallus gallus miR-7472-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atgtgct 8
         |||||||
Sbjct: 1 atgtgct 7
>ccr-miR-455 MIMAT0026301 Cyprinus carpio miR-455
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>cgr-miR-455-5p MIMAT0023964 Cricetulus griseus miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>ola-miR-455-5p MIMAT0022607 Oryzias latipes miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>bra-miR5723 MIMAT0023022 Brassica rapa miR5723
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atgtgct 8
         |||||||
Sbjct: 2 atgtgct 8
>cin-miR-5601-5p MIMAT0022325 Ciona intestinalis miR-5601-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atgtgct 8
         |||||||
Sbjct: 1 atgtgct 7
>aca-miR-455-5p MIMAT0021964 Anolis carolinensis miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>ppy-miR-455-5p MIMAT0015899 Pongo pygmaeus miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>tgu-miR-455-5p MIMAT0014655 Taeniopygia guttata miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>ssc-miR-455-5p MIMAT0022957 Sus scrofa miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>mdo-miR-455-5p MIMAT0012752 Monodelphis domestica miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>dre-miR-455-2-5p MIMAT0011302 Danio rerio miR-455-2-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 2 tatgtgc 8
>cfa-miR-455 MIMAT0006603 Canis familiaris miR-455
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>mml-miR-455-5p MIMAT0006339 Macaca mulatta miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>rno-miR-455-5p MIMAT0005316 Rattus norvegicus miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>bta-miR-455-5p MIMAT0003835 Bos taurus miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>xtr-miR-455 MIMAT0003641 Xenopus tropicalis miR-455
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>mmu-miR-455-5p MIMAT0003485 Mus musculus miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>gga-miR-455-5p MIMAT0003364 Gallus gallus miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>hsa-miR-455-5p MIMAT0003150 Homo sapiens miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>rno-miR-1-5p MIMAT0003162 Rattus norvegicus miR-1-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 7 tatgtgc 1
>tni-miR-455 MIMAT0003029 Tetraodon nigroviridis miR-455
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>fru-miR-455 MIMAT0003028 Fugu rubripes miR-455
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
>dre-miR-455-5p MIMAT0001879 Danio rerio miR-455-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tatgtgc 7
         |||||||
Sbjct: 1 tatgtgc 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 238
Number of extensions: 205
Number of successful extensions: 177
Number of sequences better than 100.0: 33
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 33
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)