BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-26
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sme-miR-2168-5p MIMAT0011266 Schmidtea mediterranea miR-2168-5p 14 20
ppc-miR-8317a-3p MIMAT0033090 Pristionchus pacificus miR-8317a-3p 12 80
ssa-miR-26d-3p MIMAT0032572 Salmo salar miR-26d-3p 12 80
ssa-miR-26a-5-3p MIMAT0032567 Salmo salar miR-26a-5-3p 12 80
bma-miR-5360 MIMAT0031752 Brugia malayi miR-5360 12 80
prd-miR-5360-5p MIMAT0030498 Panagrellus redivivus miR-5360-5p 12 80
osa-miR6252 MIMAT0024875 Oryza sativa miR6252 12 80
mse-miR-6094 MIMAT0024502 Manduca sexta miR-6094 12 80
hco-miR-5953 MIMAT0023455 Haemonchus contortus miR-5953 12 80
hco-miR-5912a MIMAT0023376 Haemonchus contortus miR-5912a 12 80
asu-miR-5360-5p MIMAT0021582 Ascaris suum miR-5360-5p 12 80
dme-miR-4984-5p MIMAT0020219 Drosophila melanogaster miR-4984-5p 12 80
gma-miR4404 MIMAT0018323 Glycine max miR4404 12 80
cin-miR-4055-5p MIMAT0016599 Ciona intestinalis miR-4055-5p 12 80
bmo-miR-3302 MIMAT0015490 Bombyx mori miR-3302 12 80
aae-miR-2942 MIMAT0014300 Aedes aegypti miR-2942 12 80
dya-miR-314 MIMAT0009077 Drosophila yakuba miR-314 12 80
dwi-miR-314 MIMAT0009025 Drosophila willistoni miR-314 12 80
dvi-miR-314-3p MIMAT0008908 Drosophila virilis miR-314-3p 12 80
dsi-miR-314 MIMAT0008864 Drosophila simulans miR-314 12 80
dse-miR-314 MIMAT0008795 Drosophila sechellia miR-314 12 80
dpe-miR-314 MIMAT0008720 Drosophila persimilis miR-314 12 80
dmo-miR-314 MIMAT0008644 Drosophila mojavensis miR-314 12 80
dgr-miR-314 MIMAT0008598 Drosophila grimshawi miR-314 12 80
der-miR-314 MIMAT0008528 Drosophila erecta miR-314 12 80
dan-miR-314 MIMAT0008465 Drosophila ananassae miR-314 12 80
mml-miR-10a-3p MIMAT0026797 Macaca mulatta miR-10a-3p 12 80
gga-miR-10a-3p MIMAT0007732 Gallus gallus miR-10a-3p 12 80
mdo-miR-10a-3p MIMAT0026648 Monodelphis domestica miR-10a-3p 12 80
cel-miR-786-5p MIMAT0015239 Caenorhabditis elegans miR-786-5p 12 80
dre-miR-26a-3p MIMAT0031947 Danio rerio miR-26a-3p 12 80
dre-miR-10c-3p MIMAT0031935 Danio rerio miR-10c-3p 12 80
dps-miR-314 MIMAT0001260 Drosophila pseudoobscura miR-314 12 80
dme-miR-314-3p MIMAT0000406 Drosophila melanogaster miR-314-3p 12 80
>sme-miR-2168-5p MIMAT0011266 Schmidtea mediterranea miR-2168-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tattcgt 7
|||||||
Sbjct: 2 tattcgt 8
>ppc-miR-8317a-3p MIMAT0033090 Pristionchus pacificus
miR-8317a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tattcg 6
||||||
Sbjct: 6 tattcg 1
>ssa-miR-26d-3p MIMAT0032572 Salmo salar miR-26d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 3 tattcg 8
>ssa-miR-26a-5-3p MIMAT0032567 Salmo salar miR-26a-5-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 3 tattcg 8
>bma-miR-5360 MIMAT0031752 Brugia malayi miR-5360
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attcgt 7
||||||
Sbjct: 6 attcgt 1
>prd-miR-5360-5p MIMAT0030498 Panagrellus redivivus miR-5360-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attcgt 7
||||||
Sbjct: 6 attcgt 1
>osa-miR6252 MIMAT0024875 Oryza sativa miR6252
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attcgt 7
||||||
Sbjct: 1 attcgt 6
>mse-miR-6094 MIMAT0024502 Manduca sexta miR-6094
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
>hco-miR-5953 MIMAT0023455 Haemonchus contortus miR-5953
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attcgt 7
||||||
Sbjct: 1 attcgt 6
>hco-miR-5912a MIMAT0023376 Haemonchus contortus miR-5912a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
>asu-miR-5360-5p MIMAT0021582 Ascaris suum miR-5360-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attcgt 7
||||||
Sbjct: 6 attcgt 1
>dme-miR-4984-5p MIMAT0020219 Drosophila melanogaster
miR-4984-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tattcg 6
||||||
Sbjct: 8 tattcg 3
>gma-miR4404 MIMAT0018323 Glycine max miR4404
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attcgt 7
||||||
Sbjct: 1 attcgt 6
>cin-miR-4055-5p MIMAT0016599 Ciona intestinalis miR-4055-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
>bmo-miR-3302 MIMAT0015490 Bombyx mori miR-3302
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attcgt 7
||||||
Sbjct: 7 attcgt 2
>aae-miR-2942 MIMAT0014300 Aedes aegypti miR-2942
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
>dya-miR-314 MIMAT0009077 Drosophila yakuba miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
>dwi-miR-314 MIMAT0009025 Drosophila willistoni miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
>dvi-miR-314-3p MIMAT0008908 Drosophila virilis miR-314-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
>dsi-miR-314 MIMAT0008864 Drosophila simulans miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
>dse-miR-314 MIMAT0008795 Drosophila sechellia miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
>dpe-miR-314 MIMAT0008720 Drosophila persimilis miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
>dmo-miR-314 MIMAT0008644 Drosophila mojavensis miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
>dgr-miR-314 MIMAT0008598 Drosophila grimshawi miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
>der-miR-314 MIMAT0008528 Drosophila erecta miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
>dan-miR-314 MIMAT0008465 Drosophila ananassae miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
>mml-miR-10a-3p MIMAT0026797 Macaca mulatta miR-10a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attcgt 7
||||||
Sbjct: 3 attcgt 8
>gga-miR-10a-3p MIMAT0007732 Gallus gallus miR-10a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attcgt 7
||||||
Sbjct: 3 attcgt 8
>mdo-miR-10a-3p MIMAT0026648 Monodelphis domestica miR-10a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attcgt 7
||||||
Sbjct: 3 attcgt 8
>cel-miR-786-5p MIMAT0015239 Caenorhabditis elegans miR-786-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tattcg 6
||||||
Sbjct: 6 tattcg 1
>dre-miR-26a-3p MIMAT0031947 Danio rerio miR-26a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 3 tattcg 8
>dre-miR-10c-3p MIMAT0031935 Danio rerio miR-10c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attcgt 7
||||||
Sbjct: 3 attcgt 8
>dps-miR-314 MIMAT0001260 Drosophila pseudoobscura miR-314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
>dme-miR-314-3p MIMAT0000406 Drosophila melanogaster miR-314-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tattcg 6
||||||
Sbjct: 1 tattcg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 40
Number of extensions: 39
Number of successful extensions: 34
Number of sequences better than 100.0: 34
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 34
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
