BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s50
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tca-miR-3813-5p MIMAT0018648 Tribolium castaneum miR-3813-5p 16 6.9
str-miR-8378-5p MIMAT0033408 Strongyloides ratti miR-8378-5p 14 27
osa-miR5497 MIMAT0022130 Oryza sativa miR5497 14 27
oar-miR-544-3p MIMAT0019299 Ovis aries miR-544-3p 14 27
ppy-miR-544 MIMAT0015994 Pongo pygmaeus miR-544 14 27
api-miR-3045a MIMAT0014784 Acyrthosiphon pisum miR-3045a 14 27
eca-miR-544 MIMAT0013170 Equus caballus miR-544 14 27
eca-miR-544b MIMAT0013118 Equus caballus miR-544b 14 27
rno-miR-544-3p MIMAT0012831 Rattus norvegicus miR-544-3p 14 27
bta-miR-2315 MIMAT0011835 Bos taurus miR-2315 14 27
cfa-miR-544 MIMAT0009910 Canis familiaris miR-544 14 27
bta-miR-544a MIMAT0009346 Bos taurus miR-544a 14 27
bta-miR-544b MIMAT0009345 Bos taurus miR-544b 14 27
tca-miR-283-3p MIMAT0019127 Tribolium castaneum miR-283-3p 14 27
ptr-miR-544 MIMAT0008216 Pan troglodytes miR-544 14 27
mml-miR-544 MIMAT0006408 Macaca mulatta miR-544 14 27
gga-miR-1807 MIMAT0007725 Gallus gallus miR-1807 14 27
mmu-miR-544-3p MIMAT0004941 Mus musculus miR-544-3p 14 27
hsa-miR-544a MIMAT0003164 Homo sapiens miR-544a 14 27
>tca-miR-3813-5p MIMAT0018648 Tribolium castaneum miR-3813-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tattctgc 8
||||||||
Sbjct: 1 tattctgc 8
>str-miR-8378-5p MIMAT0033408 Strongyloides ratti miR-8378-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attctgc 8
|||||||
Sbjct: 2 attctgc 8
>osa-miR5497 MIMAT0022130 Oryza sativa miR5497
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tattctg 7
|||||||
Sbjct: 7 tattctg 1
>oar-miR-544-3p MIMAT0019299 Ovis aries miR-544-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attctgc 8
|||||||
Sbjct: 1 attctgc 7
>ppy-miR-544 MIMAT0015994 Pongo pygmaeus miR-544
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attctgc 8
|||||||
Sbjct: 1 attctgc 7
>api-miR-3045a MIMAT0014784 Acyrthosiphon pisum miR-3045a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tattctg 7
|||||||
Sbjct: 7 tattctg 1
>eca-miR-544 MIMAT0013170 Equus caballus miR-544
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attctgc 8
|||||||
Sbjct: 1 attctgc 7
>eca-miR-544b MIMAT0013118 Equus caballus miR-544b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attctgc 8
|||||||
Sbjct: 1 attctgc 7
>rno-miR-544-3p MIMAT0012831 Rattus norvegicus miR-544-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attctgc 8
|||||||
Sbjct: 1 attctgc 7
>bta-miR-2315 MIMAT0011835 Bos taurus miR-2315
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attctgc 8
|||||||
Sbjct: 8 attctgc 2
>cfa-miR-544 MIMAT0009910 Canis familiaris miR-544
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attctgc 8
|||||||
Sbjct: 1 attctgc 7
>bta-miR-544a MIMAT0009346 Bos taurus miR-544a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attctgc 8
|||||||
Sbjct: 1 attctgc 7
>bta-miR-544b MIMAT0009345 Bos taurus miR-544b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attctgc 8
|||||||
Sbjct: 1 attctgc 7
>tca-miR-283-3p MIMAT0019127 Tribolium castaneum miR-283-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tattctg 7
|||||||
Sbjct: 7 tattctg 1
>ptr-miR-544 MIMAT0008216 Pan troglodytes miR-544
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attctgc 8
|||||||
Sbjct: 1 attctgc 7
>mml-miR-544 MIMAT0006408 Macaca mulatta miR-544
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attctgc 8
|||||||
Sbjct: 1 attctgc 7
>gga-miR-1807 MIMAT0007725 Gallus gallus miR-1807
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attctgc 8
|||||||
Sbjct: 7 attctgc 1
>mmu-miR-544-3p MIMAT0004941 Mus musculus miR-544-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attctgc 8
|||||||
Sbjct: 1 attctgc 7
>hsa-miR-544a MIMAT0003164 Homo sapiens miR-544a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attctgc 8
|||||||
Sbjct: 1 attctgc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 134
Number of extensions: 114
Number of successful extensions: 95
Number of sequences better than 100.0: 19
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
