BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bhv1-miR-b8-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

nta-miR6152b MIMAT0024752 Nicotiana tabacum miR6152b                   16   6.9  
nta-miR6152a MIMAT0024751 Nicotiana tabacum miR6152a                   16   6.9  
bhv1-miR-B8-3p MIMAT0013971 Bovine herpesvirus miR-B8-3p               16   6.9  
dsi-miR-2489 MIMAT0012510 Drosophila simulans miR-2489                 16   6.9  
dme-miR-2489-3p MIMAT0012196 Drosophila melanogaster miR-2489-3p       16   6.9  
cbn-miR-7620a MIMAT0029659 Caenorhabditis brenneri miR-7620a           14      27
mdo-miR-7360-3p MIMAT0028733 Monodelphis domestica miR-7360-3p         14      27
hbr-miR6483 MIMAT0025292 Hevea brasiliensis miR6483                    14      27
mmu-miR-5624-5p MIMAT0022377 Mus musculus miR-5624-5p                  14      27
mtr-miR5205a MIMAT0021133 Medicago truncatula miR5205a                 14      27
dme-miR-4909-3p MIMAT0020515 Drosophila melanogaster miR-4909-3p       14      27
hsa-miR-4666a-3p MIMAT0019742 Homo sapiens miR-4666a-3p                14      27
gma-miR4411 MIMAT0018331 Glycine max miR4411                           14      27
dps-miR-2524 MIMAT0012312 Drosophila pseudoobscura miR-2524            14      27
bta-miR-2480 MIMAT0012072 Bos taurus miR-2480                          14      27
>nta-miR6152b MIMAT0024752 Nicotiana tabacum miR6152b
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tattgtat 8
         ||||||||
Sbjct: 1 tattgtat 8
>nta-miR6152a MIMAT0024751 Nicotiana tabacum miR6152a
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tattgtat 8
         ||||||||
Sbjct: 1 tattgtat 8
>bhv1-miR-B8-3p MIMAT0013971 Bovine herpesvirus miR-B8-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tattgtat 8
         ||||||||
Sbjct: 1 tattgtat 8
>dsi-miR-2489 MIMAT0012510 Drosophila simulans miR-2489
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tattgtat 8
         ||||||||
Sbjct: 1 tattgtat 8
>dme-miR-2489-3p MIMAT0012196 Drosophila melanogaster
         miR-2489-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tattgtat 8
         ||||||||
Sbjct: 1 tattgtat 8
>cbn-miR-7620a MIMAT0029659 Caenorhabditis brenneri miR-7620a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tattgta 7
         |||||||
Sbjct: 1 tattgta 7
>mdo-miR-7360-3p MIMAT0028733 Monodelphis domestica miR-7360-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tattgta 7
         |||||||
Sbjct: 2 tattgta 8
>hbr-miR6483 MIMAT0025292 Hevea brasiliensis miR6483
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tattgta 7
         |||||||
Sbjct: 1 tattgta 7
>mmu-miR-5624-5p MIMAT0022377 Mus musculus miR-5624-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tattgta 7
         |||||||
Sbjct: 1 tattgta 7
>mtr-miR5205a MIMAT0021133 Medicago truncatula miR5205a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 attgtat 8
         |||||||
Sbjct: 8 attgtat 2
>dme-miR-4909-3p MIMAT0020515 Drosophila melanogaster
         miR-4909-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 attgtat 8
         |||||||
Sbjct: 1 attgtat 7
>hsa-miR-4666a-3p MIMAT0019742 Homo sapiens miR-4666a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 attgtat 8
         |||||||
Sbjct: 8 attgtat 2
>gma-miR4411 MIMAT0018331 Glycine max miR4411
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tattgta 7
         |||||||
Sbjct: 2 tattgta 8
>dps-miR-2524 MIMAT0012312 Drosophila pseudoobscura miR-2524
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tattgta 7
         |||||||
Sbjct: 1 tattgta 7
>bta-miR-2480 MIMAT0012072 Bos taurus miR-2480
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 attgtat 8
         |||||||
Sbjct: 1 attgtat 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 240
Number of extensions: 220
Number of successful extensions: 171
Number of sequences better than 100.0: 15
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 15
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)