BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bhv1-miR-b8-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
nta-miR6152b MIMAT0024752 Nicotiana tabacum miR6152b 16 6.9
nta-miR6152a MIMAT0024751 Nicotiana tabacum miR6152a 16 6.9
bhv1-miR-B8-3p MIMAT0013971 Bovine herpesvirus miR-B8-3p 16 6.9
dsi-miR-2489 MIMAT0012510 Drosophila simulans miR-2489 16 6.9
dme-miR-2489-3p MIMAT0012196 Drosophila melanogaster miR-2489-3p 16 6.9
cbn-miR-7620a MIMAT0029659 Caenorhabditis brenneri miR-7620a 14 27
mdo-miR-7360-3p MIMAT0028733 Monodelphis domestica miR-7360-3p 14 27
hbr-miR6483 MIMAT0025292 Hevea brasiliensis miR6483 14 27
mmu-miR-5624-5p MIMAT0022377 Mus musculus miR-5624-5p 14 27
mtr-miR5205a MIMAT0021133 Medicago truncatula miR5205a 14 27
dme-miR-4909-3p MIMAT0020515 Drosophila melanogaster miR-4909-3p 14 27
hsa-miR-4666a-3p MIMAT0019742 Homo sapiens miR-4666a-3p 14 27
gma-miR4411 MIMAT0018331 Glycine max miR4411 14 27
dps-miR-2524 MIMAT0012312 Drosophila pseudoobscura miR-2524 14 27
bta-miR-2480 MIMAT0012072 Bos taurus miR-2480 14 27
>nta-miR6152b MIMAT0024752 Nicotiana tabacum miR6152b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tattgtat 8
||||||||
Sbjct: 1 tattgtat 8
>nta-miR6152a MIMAT0024751 Nicotiana tabacum miR6152a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tattgtat 8
||||||||
Sbjct: 1 tattgtat 8
>bhv1-miR-B8-3p MIMAT0013971 Bovine herpesvirus miR-B8-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tattgtat 8
||||||||
Sbjct: 1 tattgtat 8
>dsi-miR-2489 MIMAT0012510 Drosophila simulans miR-2489
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tattgtat 8
||||||||
Sbjct: 1 tattgtat 8
>dme-miR-2489-3p MIMAT0012196 Drosophila melanogaster
miR-2489-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tattgtat 8
||||||||
Sbjct: 1 tattgtat 8
>cbn-miR-7620a MIMAT0029659 Caenorhabditis brenneri miR-7620a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tattgta 7
|||||||
Sbjct: 1 tattgta 7
>mdo-miR-7360-3p MIMAT0028733 Monodelphis domestica miR-7360-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tattgta 7
|||||||
Sbjct: 2 tattgta 8
>hbr-miR6483 MIMAT0025292 Hevea brasiliensis miR6483
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tattgta 7
|||||||
Sbjct: 1 tattgta 7
>mmu-miR-5624-5p MIMAT0022377 Mus musculus miR-5624-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tattgta 7
|||||||
Sbjct: 1 tattgta 7
>mtr-miR5205a MIMAT0021133 Medicago truncatula miR5205a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attgtat 8
|||||||
Sbjct: 8 attgtat 2
>dme-miR-4909-3p MIMAT0020515 Drosophila melanogaster
miR-4909-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attgtat 8
|||||||
Sbjct: 1 attgtat 7
>hsa-miR-4666a-3p MIMAT0019742 Homo sapiens miR-4666a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attgtat 8
|||||||
Sbjct: 8 attgtat 2
>gma-miR4411 MIMAT0018331 Glycine max miR4411
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tattgta 7
|||||||
Sbjct: 2 tattgta 8
>dps-miR-2524 MIMAT0012312 Drosophila pseudoobscura miR-2524
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tattgta 7
|||||||
Sbjct: 1 tattgta 7
>bta-miR-2480 MIMAT0012072 Bos taurus miR-2480
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attgtat 8
|||||||
Sbjct: 1 attgtat 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 2
