BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m8-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdv1-miR-M8-5p MIMAT0005805 Mareks disease miR-M8-5p 16 6.9
ssc-miR-7857-3p MIMAT0037007 Sus scrofa miR-7857-3p 14 27
chi-miR-338-5p MIMAT0036149 Capra hircus miR-338-5p 14 27
dvi-miR-9538-5p MIMAT0035618 Drosophila virilis miR-9538-5p 14 27
ssa-miR-338a-5p MIMAT0032616 Salmo salar miR-338a-5p 14 27
ssa-miR-338a-3-5p MIMAT0032614 Salmo salar miR-338a-3-5p 14 27
hsa-miR-6739-3p MIMAT0027380 Homo sapiens miR-6739-3p 14 27
pde-miR3701 MIMAT0025352 Pinus densata miR3701 14 27
hco-miR-5886a MIMAT0023320 Haemonchus contortus miR-5886a 14 27
osa-miR5522 MIMAT0022156 Oryza sativa miR5522 14 27
aca-miR-338-5p MIMAT0021937 Anolis carolinensis miR-338-5p 14 27
gma-miR5030 MIMAT0021049 Glycine max miR5030 14 27
cel-miR-4811-5p MIMAT0019996 Caenorhabditis elegans miR-4811-5p 14 27
pma-miR-4615 MIMAT0019649 Petromyzon marinus miR-4615 14 27
ppy-miR-338-5p MIMAT0015840 Pongo pygmaeus miR-338-5p 14 27
aly-miR773b-3p MIMAT0017684 Arabidopsis lyrata miR773b-3p 14 27
eca-miR-338-5p MIMAT0013035 Equus caballus miR-338-5p 14 27
dsi-miR-982c MIMAT0012513 Drosophila simulans miR-982c 14 27
mml-miR-338-5p MIMAT0006277 Macaca mulatta miR-338-5p 14 27
hsa-miR-338-5p MIMAT0004701 Homo sapiens miR-338-5p 14 27
mmu-miR-338-5p MIMAT0004647 Mus musculus miR-338-5p 14 27
rno-miR-338-5p MIMAT0004646 Rattus norvegicus miR-338-5p 14 27
>mdv1-miR-M8-5p MIMAT0005805 Mareks disease miR-M8-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tattgttc 8
||||||||
Sbjct: 1 tattgttc 8
>ssc-miR-7857-3p MIMAT0037007 Sus scrofa miR-7857-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attgttc 8
|||||||
Sbjct: 1 attgttc 7
>chi-miR-338-5p MIMAT0036149 Capra hircus miR-338-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tattgtt 7
|||||||
Sbjct: 7 tattgtt 1
>dvi-miR-9538-5p MIMAT0035618 Drosophila virilis miR-9538-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attgttc 8
|||||||
Sbjct: 1 attgttc 7
>ssa-miR-338a-5p MIMAT0032616 Salmo salar miR-338a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tattgtt 7
|||||||
Sbjct: 7 tattgtt 1
>ssa-miR-338a-3-5p MIMAT0032614 Salmo salar miR-338a-3-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tattgtt 7
|||||||
Sbjct: 7 tattgtt 1
>hsa-miR-6739-3p MIMAT0027380 Homo sapiens miR-6739-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attgttc 8
|||||||
Sbjct: 1 attgttc 7
>pde-miR3701 MIMAT0025352 Pinus densata miR3701
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attgttc 8
|||||||
Sbjct: 8 attgttc 2
>hco-miR-5886a MIMAT0023320 Haemonchus contortus miR-5886a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attgttc 8
|||||||
Sbjct: 7 attgttc 1
>osa-miR5522 MIMAT0022156 Oryza sativa miR5522
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tattgtt 7
|||||||
Sbjct: 7 tattgtt 1
>aca-miR-338-5p MIMAT0021937 Anolis carolinensis miR-338-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tattgtt 7
|||||||
Sbjct: 7 tattgtt 1
>gma-miR5030 MIMAT0021049 Glycine max miR5030
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attgttc 8
|||||||
Sbjct: 8 attgttc 2
>cel-miR-4811-5p MIMAT0019996 Caenorhabditis elegans miR-4811-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attgttc 8
|||||||
Sbjct: 8 attgttc 2
>pma-miR-4615 MIMAT0019649 Petromyzon marinus miR-4615
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attgttc 8
|||||||
Sbjct: 2 attgttc 8
>ppy-miR-338-5p MIMAT0015840 Pongo pygmaeus miR-338-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tattgtt 7
|||||||
Sbjct: 7 tattgtt 1
>aly-miR773b-3p MIMAT0017684 Arabidopsis lyrata miR773b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attgttc 8
|||||||
Sbjct: 2 attgttc 8
>eca-miR-338-5p MIMAT0013035 Equus caballus miR-338-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tattgtt 7
|||||||
Sbjct: 7 tattgtt 1
>dsi-miR-982c MIMAT0012513 Drosophila simulans miR-982c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tattgtt 7
|||||||
Sbjct: 2 tattgtt 8
>mml-miR-338-5p MIMAT0006277 Macaca mulatta miR-338-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tattgtt 7
|||||||
Sbjct: 7 tattgtt 1
>hsa-miR-338-5p MIMAT0004701 Homo sapiens miR-338-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tattgtt 7
|||||||
Sbjct: 7 tattgtt 1
>mmu-miR-338-5p MIMAT0004647 Mus musculus miR-338-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tattgtt 7
|||||||
Sbjct: 7 tattgtt 1
>rno-miR-338-5p MIMAT0004646 Rattus norvegicus miR-338-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tattgtt 7
|||||||
Sbjct: 7 tattgtt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 190
Number of extensions: 167
Number of successful extensions: 86
Number of sequences better than 100.0: 22
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 22
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
