BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart2-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bdi-miR7714-5p MIMAT0030150 Brachypodium distachyon miR7714-5p 16 6.9
ebv-miR-BART2-5p MIMAT0001000 Epstein Barr miR-BART2-5p 16 6.9
nve-miR-9467 MIMAT0035426 Nematostella vectensis miR-9467 14 27
eca-miR-9018 MIMAT0034559 Equus caballus miR-9018 14 27
hhi-miR-737 MIMAT0030367 Hippoglossus hippoglossus miR-737 14 27
ame-miR-6006-3p MIMAT0023554 Apis mellifera miR-6006-3p 14 27
dme-miR-4946-5p MIMAT0020156 Drosophila melanogaster miR-4946-5p 14 27
tca-miR-3822-3p MIMAT0018671 Tribolium castaneum miR-3822-3p 14 27
dme-miR-2283-5p MIMAT0011791 Drosophila melanogaster miR-2283-5p 14 27
oan-miR-1422b-3p MIMAT0006886 Ornithorhynchus anatinus miR-1422b-3p 14 27
oan-miR-1422a-3p MIMAT0006880 Ornithorhynchus anatinus miR-1422a-3p 14 27
>bdi-miR7714-5p MIMAT0030150 Brachypodium distachyon miR7714-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tattttct 8
||||||||
Sbjct: 1 tattttct 8
>ebv-miR-BART2-5p MIMAT0001000 Epstein Barr miR-BART2-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tattttct 8
||||||||
Sbjct: 1 tattttct 8
>nve-miR-9467 MIMAT0035426 Nematostella vectensis miR-9467
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attttct 8
|||||||
Sbjct: 2 attttct 8
>eca-miR-9018 MIMAT0034559 Equus caballus miR-9018
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attttct 8
|||||||
Sbjct: 1 attttct 7
>hhi-miR-737 MIMAT0030367 Hippoglossus hippoglossus miR-737
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attttct 8
|||||||
Sbjct: 7 attttct 1
>ame-miR-6006-3p MIMAT0023554 Apis mellifera miR-6006-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 attttct 8
|||||||
Sbjct: 1 attttct 7
>dme-miR-4946-5p MIMAT0020156 Drosophila melanogaster
miR-4946-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tattttc 7
|||||||
Sbjct: 1 tattttc 7
>tca-miR-3822-3p MIMAT0018671 Tribolium castaneum miR-3822-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tattttc 7
|||||||
Sbjct: 2 tattttc 8
>dme-miR-2283-5p MIMAT0011791 Drosophila melanogaster
miR-2283-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tattttc 7
|||||||
Sbjct: 7 tattttc 1
>oan-miR-1422b-3p MIMAT0006886 Ornithorhynchus anatinus
miR-1422b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attttct 8
|||||||
Sbjct: 7 attttct 1
>oan-miR-1422a-3p MIMAT0006880 Ornithorhynchus anatinus
miR-1422a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 attttct 8
|||||||
Sbjct: 8 attttct 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 123
Number of extensions: 110
Number of successful extensions: 94
Number of sequences better than 100.0: 11
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
