BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hpv16-miR-h6
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-338-5p MIMAT0036903 Ophiophagus hannah miR-338-5p 14 20
chi-miR-545-3p MIMAT0036278 Capra hircus miR-545-3p 14 20
bra-miR9566-5p MIMAT0035691 Brassica rapa miR9566-5p 14 20
ppc-miR-8264-5p MIMAT0033012 Pristionchus pacificus miR-8264-5p 14 20
stu-miR827-5p MIMAT0031272 Solanum tuberosum miR827-5p 14 20
hsa-miR-7159-5p MIMAT0028228 Homo sapiens miR-7159-5p 14 20
ssc-miR-545-3p MIMAT0020594 Sus scrofa miR-545-3p 14 20
aly-miR4244 MIMAT0017933 Arabidopsis lyrata miR4244 14 20
rno-miR-3065-5p MIMAT0017839 Rattus norvegicus miR-3065-5p 14 20
aly-miR827-5p MIMAT0017607 Arabidopsis lyrata miR827-5p 14 20
hsa-miR-3065-5p MIMAT0015066 Homo sapiens miR-3065-5p 14 20
mmu-miR-3065-5p MIMAT0014836 Mus musculus miR-3065-5p 14 20
eca-miR-545 MIMAT0013239 Equus caballus miR-545 14 20
bta-miR-545-3p MIMAT0003807 Bos taurus miR-545-3p 14 20
oha-miR-7-2-3p MIMAT0036947 Ophiophagus hannah miR-7-2-3p 12 80
oha-miR-7-1-3p MIMAT0036946 Ophiophagus hannah miR-7-1-3p 12 80
tch-miR-505-3p MIMAT0036499 Tupaia chinensis miR-505-3p 12 80
chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p 12 80
efu-miR-9355 MIMAT0035145 Eptesicus fuscus miR-9355 12 80
efu-miR-9318a MIMAT0035003 Eptesicus fuscus miR-9318a 12 80
efu-miR-9308 MIMAT0034981 Eptesicus fuscus miR-9308 12 80
efu-miR-9201b MIMAT0034787 Eptesicus fuscus miR-9201b 12 80
eca-miR-9006 MIMAT0034546 Equus caballus miR-9006 12 80
eca-miR-8990 MIMAT0034527 Equus caballus miR-8990 12 80
gra-miR8761 MIMAT0034191 Gossypium raimondii miR8761 12 80
sma-miR-7-3p MIMAT0033599 Schistosoma mansoni miR-7-3p 12 80
ppc-miR-8253-5p MIMAT0032974 Pristionchus pacificus miR-8253-5p 12 80
ssa-miR-7a-7-3p MIMAT0032700 Salmo salar miR-7a-7-3p 12 80
ssa-miR-7a-6-3p MIMAT0032699 Salmo salar miR-7a-6-3p 12 80
ssa-miR-7a-5-3p MIMAT0032698 Salmo salar miR-7a-5-3p 12 80
ssa-miR-7a-4-3p MIMAT0032697 Salmo salar miR-7a-4-3p 12 80
ssa-miR-7a-3-3p MIMAT0032696 Salmo salar miR-7a-3-3p 12 80
ssa-miR-7a-2-3p MIMAT0032695 Salmo salar miR-7a-2-3p 12 80
ssa-miR-7a-1-3p MIMAT0032694 Salmo salar miR-7a-1-3p 12 80
bbe-miR-2062-5p MIMAT0031623 Branchiostoma belcheri miR-2062-5p 12 80
bdi-miR7745-3p MIMAT0030231 Brachypodium distachyon miR7745-3p 12 80
cbn-miR-7621a MIMAT0029660 Caenorhabditis brenneri miR-7621a 12 80
crm-miR-7603 MIMAT0029620 Caenorhabditis remanei miR-7603 12 80
aja-miR-7 MIMAT0031143 Artibeus jamaicensis miR-7 12 80
mml-miR-7198-3p MIMAT0028361 Macaca mulatta miR-7198-3p 12 80
ssc-miR-7142-3p MIMAT0028160 Sus scrofa miR-7142-3p 12 80
sbi-miR6233-5p MIMAT0026448 Sorghum bicolor miR6233-5p 12 80
gga-miR-6552-3p MIMAT0025612 Gallus gallus miR-6552-3p 12 80
osa-miR5827 MIMAT0023301 Oryza sativa miR5827 12 80
sha-miR-7 MIMAT0022793 Sarcophilus harrisii miR-7 12 80
cin-miR-5610-3p MIMAT0022348 Ciona intestinalis miR-5610-3p 12 80
aca-miR-5457 MIMAT0022084 Anolis carolinensis miR-5457 12 80
aca-miR-5452-3p MIMAT0022076 Anolis carolinensis miR-5452-3p 12 80
aca-miR-7-2-3p MIMAT0021985 Anolis carolinensis miR-7-2-3p 12 80
aca-miR-7-1-3p MIMAT0021984 Anolis carolinensis miR-7-1-3p 12 80
aca-miR-21-3p MIMAT0021866 Anolis carolinensis miR-21-3p 12 80
mtr-miR5234 MIMAT0021219 Medicago truncatula miR5234 12 80
mtr-miR2670e MIMAT0021208 Medicago truncatula miR2670e 12 80
bdi-miR827-5p MIMAT0027075 Brachypodium distachyon miR827-5p 12 80
hsa-miR-3529-3p MIMAT0022741 Homo sapiens miR-3529-3p 12 80
pma-miR-7a-3p MIMAT0019371 Petromyzon marinus miR-7a-3p 12 80
gma-miR4410 MIMAT0018329 Glycine max miR4410 12 80
gma-miR4341 MIMAT0018229 Glycine max miR4341 12 80
tca-miR-3843-5p MIMAT0018732 Tribolium castaneum miR-3843-5p 12 80
tca-miR-3839-3p MIMAT0018723 Tribolium castaneum miR-3839-3p 12 80
vvi-miR3631d MIMAT0018034 Vitis vinifera miR3631d 12 80
vvi-miR3631c MIMAT0018033 Vitis vinifera miR3631c 12 80
vvi-miR3631b-5p MIMAT0018031 Vitis vinifera miR3631b-5p 12 80
vvi-miR3631a-5p MIMAT0018029 Vitis vinifera miR3631a-5p 12 80
cin-miR-4154-3p MIMAT0016758 Ciona intestinalis miR-4154-3p 12 80
cin-miR-4074-5p MIMAT0016636 Ciona intestinalis miR-4074-5p 12 80
ppy-miR-1267 MIMAT0016191 Pongo pygmaeus miR-1267 12 80
ppy-miR-505 MIMAT0015928 Pongo pygmaeus miR-505 12 80
aly-miR3436-3p MIMAT0017704 Arabidopsis lyrata miR3436-3p 12 80
tgu-miR-7-4-3p MIMAT0031020 Taeniopygia guttata miR-7-4-3p 12 80
tgu-miR-7-1-3p MIMAT0014632 Taeniopygia guttata miR-7-1-3p 12 80
zma-miR827-5p MIMAT0015365 Zea mays miR827-5p 12 80
ssc-miR-505 MIMAT0013961 Sus scrofa miR-505 12 80
eca-miR-505 MIMAT0013229 Equus caballus miR-505 12 80
dsi-miR-987-3p MIMAT0012434 Drosophila simulans miR-987-3p 12 80
dps-miR-987-3p MIMAT0012236 Drosophila pseudoobscura miR-987-3p 12 80
dme-miR-2491-3p MIMAT0020912 Drosophila melanogaster miR-2491-3p 12 80
bta-miR-2434 MIMAT0012006 Bos taurus miR-2434 12 80
bfl-miR-2062-5p MIMAT0009988 Branchiostoma floridae miR-2062-5p 12 80
nve-miR-2027-5p MIMAT0009772 Nematostella vectensis miR-2027-5p 12 80
bta-miR-505 MIMAT0009341 Bos taurus miR-505 12 80
dya-miR-287 MIMAT0009102 Drosophila yakuba miR-287 12 80
dwi-miR-287 MIMAT0009003 Drosophila willistoni miR-287 12 80
dvi-miR-287 MIMAT0008930 Drosophila virilis miR-287 12 80
dsi-miR-287 MIMAT0008899 Drosophila simulans miR-287 12 80
dse-miR-287 MIMAT0008770 Drosophila sechellia miR-287 12 80
dpe-miR-287 MIMAT0008757 Drosophila persimilis miR-287 12 80
dmo-miR-287 MIMAT0008659 Drosophila mojavensis miR-287 12 80
dgr-miR-287 MIMAT0008563 Drosophila grimshawi miR-287 12 80
der-miR-287 MIMAT0008483 Drosophila erecta miR-287 12 80
dan-miR-287 MIMAT0008424 Drosophila ananassae miR-287 12 80
ptr-miR-505 MIMAT0008178 Pan troglodytes miR-505 12 80
ptr-miR-1267 MIMAT0007991 Pan troglodytes miR-1267 12 80
osa-miR1873 MIMAT0007826 Oryza sativa miR1873 12 80
mml-miR-505-3p MIMAT0006369 Macaca mulatta miR-505-3p 12 80
mml-miR-196a-3p MIMAT0026839 Macaca mulatta miR-196a-3p 12 80
gga-miR-1808 MIMAT0007726 Gallus gallus miR-1808 12 80
gma-miR1510a-3p MIMAT0007368 Glycine max miR1510a-3p 12 80
cin-miR-7-3p MIMAT0015251 Ciona intestinalis miR-7-3p 12 80
oan-miR-7-1-3p MIMAT0009195 Ornithorhynchus anatinus miR-7-1-3p 12 80
oan-miR-1396 MIMAT0007198 Ornithorhynchus anatinus miR-1396 12 80
oan-miR-7-3p MIMAT0006987 Ornithorhynchus anatinus miR-7-3p 12 80
hsa-miR-1267 MIMAT0005921 Homo sapiens miR-1267 12 80
tae-miR1134 MIMAT0005369 Triticum aestivum miR1134 12 80
gga-miR-21-3p MIMAT0026643 Gallus gallus miR-21-3p 12 80
mmu-miR-505-3p MIMAT0003513 Mus musculus miR-505-3p 12 80
hsa-miR-505-3p MIMAT0002876 Homo sapiens miR-505-3p 12 80
dps-miR-287 MIMAT0001251 Drosophila pseudoobscura miR-287 12 80
rno-miR-7a-2-3p MIMAT0017091 Rattus norvegicus miR-7a-2-3p 12 80
mmu-miR-7b-3p MIMAT0017071 Mus musculus miR-7b-3p 12 80
mmu-miR-7a-2-3p MIMAT0017070 Mus musculus miR-7a-2-3p 12 80
mmu-miR-7a-1-3p MIMAT0004670 Mus musculus miR-7a-1-3p 12 80
dme-miR-287-3p MIMAT0000360 Drosophila melanogaster miR-287-3p 12 80
hsa-miR-7-2-3p MIMAT0004554 Homo sapiens miR-7-2-3p 12 80
hsa-miR-7-1-3p MIMAT0004553 Homo sapiens miR-7-1-3p 12 80
>oha-miR-338-5p MIMAT0036903 Ophiophagus hannah miR-338-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaacaa 7
|||||||
Sbjct: 1 tcaacaa 7
>chi-miR-545-3p MIMAT0036278 Capra hircus miR-545-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaacaa 7
|||||||
Sbjct: 1 tcaacaa 7
>bra-miR9566-5p MIMAT0035691 Brassica rapa miR9566-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaacaa 7
|||||||
Sbjct: 7 tcaacaa 1
>ppc-miR-8264-5p MIMAT0033012 Pristionchus pacificus miR-8264-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaacaa 7
|||||||
Sbjct: 8 tcaacaa 2
>stu-miR827-5p MIMAT0031272 Solanum tuberosum miR827-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaacaa 7
|||||||
Sbjct: 8 tcaacaa 2
>hsa-miR-7159-5p MIMAT0028228 Homo sapiens miR-7159-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaacaa 7
|||||||
Sbjct: 2 tcaacaa 8
>ssc-miR-545-3p MIMAT0020594 Sus scrofa miR-545-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaacaa 7
|||||||
Sbjct: 2 tcaacaa 8
>aly-miR4244 MIMAT0017933 Arabidopsis lyrata miR4244
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaacaa 7
|||||||
Sbjct: 7 tcaacaa 1
>rno-miR-3065-5p MIMAT0017839 Rattus norvegicus miR-3065-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaacaa 7
|||||||
Sbjct: 1 tcaacaa 7
>aly-miR827-5p MIMAT0017607 Arabidopsis lyrata miR827-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaacaa 7
|||||||
Sbjct: 8 tcaacaa 2
>hsa-miR-3065-5p MIMAT0015066 Homo sapiens miR-3065-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaacaa 7
|||||||
Sbjct: 1 tcaacaa 7
>mmu-miR-3065-5p MIMAT0014836 Mus musculus miR-3065-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaacaa 7
|||||||
Sbjct: 1 tcaacaa 7
>eca-miR-545 MIMAT0013239 Equus caballus miR-545
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaacaa 7
|||||||
Sbjct: 1 tcaacaa 7
>bta-miR-545-3p MIMAT0003807 Bos taurus miR-545-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaacaa 7
|||||||
Sbjct: 2 tcaacaa 8
>oha-miR-7-2-3p MIMAT0036947 Ophiophagus hannah miR-7-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>oha-miR-7-1-3p MIMAT0036946 Ophiophagus hannah miR-7-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>tch-miR-505-3p MIMAT0036499 Tupaia chinensis miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 3 tcaaca 8
>chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 1 tcaaca 6
>efu-miR-9355 MIMAT0035145 Eptesicus fuscus miR-9355
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>efu-miR-9318a MIMAT0035003 Eptesicus fuscus miR-9318a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 6 tcaaca 1
>efu-miR-9308 MIMAT0034981 Eptesicus fuscus miR-9308
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 6 tcaaca 1
>efu-miR-9201b MIMAT0034787 Eptesicus fuscus miR-9201b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 6 tcaaca 1
>eca-miR-9006 MIMAT0034546 Equus caballus miR-9006
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacaa 7
||||||
Sbjct: 8 caacaa 3
>eca-miR-8990 MIMAT0034527 Equus caballus miR-8990
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 6 tcaaca 1
>gra-miR8761 MIMAT0034191 Gossypium raimondii miR8761
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 6 tcaaca 1
>sma-miR-7-3p MIMAT0033599 Schistosoma mansoni miR-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>ppc-miR-8253-5p MIMAT0032974 Pristionchus pacificus miR-8253-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 6 tcaaca 1
>ssa-miR-7a-7-3p MIMAT0032700 Salmo salar miR-7a-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>ssa-miR-7a-6-3p MIMAT0032699 Salmo salar miR-7a-6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>ssa-miR-7a-5-3p MIMAT0032698 Salmo salar miR-7a-5-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>ssa-miR-7a-4-3p MIMAT0032697 Salmo salar miR-7a-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>ssa-miR-7a-3-3p MIMAT0032696 Salmo salar miR-7a-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>ssa-miR-7a-2-3p MIMAT0032695 Salmo salar miR-7a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>ssa-miR-7a-1-3p MIMAT0032694 Salmo salar miR-7a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>bbe-miR-2062-5p MIMAT0031623 Branchiostoma belcheri miR-2062-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 3 caacaa 8
>bdi-miR7745-3p MIMAT0030231 Brachypodium distachyon miR7745-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacaa 7
||||||
Sbjct: 6 caacaa 1
>cbn-miR-7621a MIMAT0029660 Caenorhabditis brenneri miR-7621a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 1 tcaaca 6
>crm-miR-7603 MIMAT0029620 Caenorhabditis remanei miR-7603
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 6 tcaaca 1
>aja-miR-7 MIMAT0031143 Artibeus jamaicensis miR-7
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>mml-miR-7198-3p MIMAT0028361 Macaca mulatta miR-7198-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 1 tcaaca 6
>ssc-miR-7142-3p MIMAT0028160 Sus scrofa miR-7142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacaa 7
||||||
Sbjct: 7 caacaa 2
>sbi-miR6233-5p MIMAT0026448 Sorghum bicolor miR6233-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 6 tcaaca 1
>gga-miR-6552-3p MIMAT0025612 Gallus gallus miR-6552-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>osa-miR5827 MIMAT0023301 Oryza sativa miR5827
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacaa 7
||||||
Sbjct: 7 caacaa 2
>sha-miR-7 MIMAT0022793 Sarcophilus harrisii miR-7
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>cin-miR-5610-3p MIMAT0022348 Ciona intestinalis miR-5610-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>aca-miR-5457 MIMAT0022084 Anolis carolinensis miR-5457
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 1 tcaaca 6
>aca-miR-5452-3p MIMAT0022076 Anolis carolinensis miR-5452-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>aca-miR-7-2-3p MIMAT0021985 Anolis carolinensis miR-7-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>aca-miR-7-1-3p MIMAT0021984 Anolis carolinensis miR-7-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>aca-miR-21-3p MIMAT0021866 Anolis carolinensis miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>mtr-miR5234 MIMAT0021219 Medicago truncatula miR5234
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacaa 7
||||||
Sbjct: 8 caacaa 3
>mtr-miR2670e MIMAT0021208 Medicago truncatula miR2670e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 3 tcaaca 8
>bdi-miR827-5p MIMAT0027075 Brachypodium distachyon miR827-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacaa 7
||||||
Sbjct: 8 caacaa 3
>hsa-miR-3529-3p MIMAT0022741 Homo sapiens miR-3529-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 3 caacaa 8
>pma-miR-7a-3p MIMAT0019371 Petromyzon marinus miR-7a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>gma-miR4410 MIMAT0018329 Glycine max miR4410
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>gma-miR4341 MIMAT0018229 Glycine max miR4341
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>tca-miR-3843-5p MIMAT0018732 Tribolium castaneum miR-3843-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacaa 7
||||||
Sbjct: 8 caacaa 3
>tca-miR-3839-3p MIMAT0018723 Tribolium castaneum miR-3839-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacaa 7
||||||
Sbjct: 8 caacaa 3
>vvi-miR3631d MIMAT0018034 Vitis vinifera miR3631d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>vvi-miR3631c MIMAT0018033 Vitis vinifera miR3631c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>vvi-miR3631b-5p MIMAT0018031 Vitis vinifera miR3631b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>vvi-miR3631a-5p MIMAT0018029 Vitis vinifera miR3631a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>cin-miR-4154-3p MIMAT0016758 Ciona intestinalis miR-4154-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacaa 7
||||||
Sbjct: 7 caacaa 2
>cin-miR-4074-5p MIMAT0016636 Ciona intestinalis miR-4074-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 6 tcaaca 1
>ppy-miR-1267 MIMAT0016191 Pongo pygmaeus miR-1267
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>ppy-miR-505 MIMAT0015928 Pongo pygmaeus miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 3 tcaaca 8
>aly-miR3436-3p MIMAT0017704 Arabidopsis lyrata miR3436-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>tgu-miR-7-4-3p MIMAT0031020 Taeniopygia guttata miR-7-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>tgu-miR-7-1-3p MIMAT0014632 Taeniopygia guttata miR-7-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>zma-miR827-5p MIMAT0015365 Zea mays miR827-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacaa 7
||||||
Sbjct: 7 caacaa 2
>ssc-miR-505 MIMAT0013961 Sus scrofa miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 1 tcaaca 6
>eca-miR-505 MIMAT0013229 Equus caballus miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 3 tcaaca 8
>dsi-miR-987-3p MIMAT0012434 Drosophila simulans miR-987-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 3 tcaaca 8
>dps-miR-987-3p MIMAT0012236 Drosophila pseudoobscura miR-987-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 3 tcaaca 8
>dme-miR-2491-3p MIMAT0020912 Drosophila melanogaster
miR-2491-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>bta-miR-2434 MIMAT0012006 Bos taurus miR-2434
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacaa 7
||||||
Sbjct: 6 caacaa 1
>bfl-miR-2062-5p MIMAT0009988 Branchiostoma floridae miR-2062-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 3 caacaa 8
>nve-miR-2027-5p MIMAT0009772 Nematostella vectensis miR-2027-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacaa 7
||||||
Sbjct: 8 caacaa 3
>bta-miR-505 MIMAT0009341 Bos taurus miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 3 tcaaca 8
>dya-miR-287 MIMAT0009102 Drosophila yakuba miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>dwi-miR-287 MIMAT0009003 Drosophila willistoni miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>dvi-miR-287 MIMAT0008930 Drosophila virilis miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>dsi-miR-287 MIMAT0008899 Drosophila simulans miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>dse-miR-287 MIMAT0008770 Drosophila sechellia miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>dpe-miR-287 MIMAT0008757 Drosophila persimilis miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>dmo-miR-287 MIMAT0008659 Drosophila mojavensis miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>dgr-miR-287 MIMAT0008563 Drosophila grimshawi miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>der-miR-287 MIMAT0008483 Drosophila erecta miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>dan-miR-287 MIMAT0008424 Drosophila ananassae miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>ptr-miR-505 MIMAT0008178 Pan troglodytes miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 3 tcaaca 8
>ptr-miR-1267 MIMAT0007991 Pan troglodytes miR-1267
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>osa-miR1873 MIMAT0007826 Oryza sativa miR1873
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 1 tcaaca 6
>mml-miR-505-3p MIMAT0006369 Macaca mulatta miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 3 tcaaca 8
>mml-miR-196a-3p MIMAT0026839 Macaca mulatta miR-196a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 3 caacaa 8
>gga-miR-1808 MIMAT0007726 Gallus gallus miR-1808
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacaa 7
||||||
Sbjct: 7 caacaa 2
>gma-miR1510a-3p MIMAT0007368 Glycine max miR1510a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacaa 7
||||||
Sbjct: 6 caacaa 1
>cin-miR-7-3p MIMAT0015251 Ciona intestinalis miR-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>oan-miR-7-1-3p MIMAT0009195 Ornithorhynchus anatinus miR-7-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>oan-miR-1396 MIMAT0007198 Ornithorhynchus anatinus miR-1396
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>oan-miR-7-3p MIMAT0006987 Ornithorhynchus anatinus miR-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>hsa-miR-1267 MIMAT0005921 Homo sapiens miR-1267
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>tae-miR1134 MIMAT0005369 Triticum aestivum miR1134
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>gga-miR-21-3p MIMAT0026643 Gallus gallus miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>mmu-miR-505-3p MIMAT0003513 Mus musculus miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 3 tcaaca 8
>hsa-miR-505-3p MIMAT0002876 Homo sapiens miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaaca 6
||||||
Sbjct: 3 tcaaca 8
>dps-miR-287 MIMAT0001251 Drosophila pseudoobscura miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>rno-miR-7a-2-3p MIMAT0017091 Rattus norvegicus miR-7a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>mmu-miR-7b-3p MIMAT0017071 Mus musculus miR-7b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>mmu-miR-7a-2-3p MIMAT0017070 Mus musculus miR-7a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>mmu-miR-7a-1-3p MIMAT0004670 Mus musculus miR-7a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>dme-miR-287-3p MIMAT0000360 Drosophila melanogaster miR-287-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaaca 6
||||||
Sbjct: 8 tcaaca 3
>hsa-miR-7-2-3p MIMAT0004554 Homo sapiens miR-7-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
>hsa-miR-7-1-3p MIMAT0004553 Homo sapiens miR-7-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacaa 7
||||||
Sbjct: 1 caacaa 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 166
Number of extensions: 152
Number of successful extensions: 115
Number of sequences better than 100.0: 115
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 115
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
