BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m20
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdv2-miR-M20-3p MIMAT0004462 Mareks disease miR-M20-3p 16 6.9
oha-miR-26-5p MIMAT0036861 Ophiophagus hannah miR-26-5p 14 27
tch-miR-26a-2-5p MIMAT0036602 Tupaia chinensis miR-26a-2-5p 14 27
tch-miR-26b-5p MIMAT0036550 Tupaia chinensis miR-26b-5p 14 27
tch-miR-26a-5p MIMAT0036488 Tupaia chinensis miR-26a-5p 14 27
chi-miR-26b-5p MIMAT0036103 Capra hircus miR-26b-5p 14 27
chi-miR-26a-5p MIMAT0036101 Capra hircus miR-26a-5p 14 27
efu-miR-26b MIMAT0035076 Eptesicus fuscus miR-26b 14 27
efu-miR-26c MIMAT0035006 Eptesicus fuscus miR-26c 14 27
efu-miR-26a MIMAT0034939 Eptesicus fuscus miR-26a 14 27
cfa-miR-508a MIMAT0034419 Canis familiaris miR-508a 14 27
ppc-miR-8336-5p MIMAT0033218 Pristionchus pacificus miR-8336-5p 14 27
ssa-miR-26d-5p MIMAT0032571 Salmo salar miR-26d-5p 14 27
ssa-miR-26b-5p MIMAT0032569 Salmo salar miR-26b-5p 14 27
ssa-miR-26a-5p MIMAT0032563 Salmo salar miR-26a-5p 14 27
ssa-miR-10b-3p MIMAT0032296 Salmo salar miR-10b-3p 14 27
prd-miR-7872-3p MIMAT0030489 Panagrellus redivivus miR-7872-3p 14 27
hhi-miR-26 MIMAT0030361 Hippoglossus hippoglossus miR-26 14 27
oar-miR-26b MIMAT0030052 Ovis aries miR-26b 14 27
oar-miR-26a MIMAT0030051 Ovis aries miR-26a 14 27
ipu-miR-26b MIMAT0029486 Ictalurus punctatus miR-26b 14 27
ipu-miR-26a MIMAT0029485 Ictalurus punctatus miR-26a 14 27
ccr-miR-26a MIMAT0026281 Cyprinus carpio miR-26a 14 27
hme-miR-6303-5p MIMAT0025008 Heliconius melpomene miR-6303-5p 14 27
gma-miR1516d MIMAT0024927 Glycine max miR1516d 14 27
ggo-miR-26b MIMAT0024091 Gorilla gorilla miR-26b 14 27
cgr-miR-26b-5p MIMAT0023872 Cricetulus griseus miR-26b-5p 14 27
cgr-miR-26a MIMAT0023871 Cricetulus griseus miR-26a 14 27
hco-miR-5928e MIMAT0023481 Haemonchus contortus miR-5928e 14 27
ola-miR-26 MIMAT0022575 Oryzias latipes miR-26 14 27
hsa-miR-5697 MIMAT0022490 Homo sapiens miR-5697 14 27
aca-miR-26-5p MIMAT0021902 Anolis carolinensis miR-26-5p 14 27
pma-miR-26b-5p MIMAT0019411 Petromyzon marinus miR-26b-5p 14 27
pma-miR-26a-5p MIMAT0019408 Petromyzon marinus miR-26a-5p 14 27
hsa-miR-4465 MIMAT0018992 Homo sapiens miR-4465 14 27
ahy-miR3509-5p MIMAT0016331 Arachis hypogaea miR3509-5p 14 27
ppy-miR-26b MIMAT0015733 Pongo pygmaeus miR-26b 14 27
tgu-miR-26-5p MIMAT0014516 Taeniopygia guttata miR-26-5p 14 27
eca-miR-26a MIMAT0012975 Equus caballus miR-26a 14 27
mdo-miR-26-5p MIMAT0012736 Monodelphis domestica miR-26-5p 14 27
ptr-miR-26b MIMAT0008077 Pan troglodytes miR-26b 14 27
ptr-miR-1297 MIMAT0008016 Pan troglodytes miR-1297 14 27
cfa-miR-26b MIMAT0006678 Canis familiaris miR-26b 14 27
cfa-miR-26a MIMAT0006595 Canis familiaris miR-26a 14 27
mml-miR-26b-5p MIMAT0006166 Macaca mulatta miR-26b-5p 14 27
oan-miR-26-5p MIMAT0006991 Ornithorhynchus anatinus miR-26-5p 14 27
hsa-miR-1297 MIMAT0005886 Homo sapiens miR-1297 14 27
dme-miR-982-3p MIMAT0020879 Drosophila melanogaster miR-982-3p 14 27
xtr-miR-26 MIMAT0003569 Xenopus tropicalis miR-26 14 27
bta-miR-26b MIMAT0003531 Bos taurus miR-26b 14 27
bta-miR-26a MIMAT0003516 Bos taurus miR-26a 14 27
tni-miR-26 MIMAT0003038 Tetraodon nigroviridis miR-26 14 27
fru-miR-26 MIMAT0003037 Fugu rubripes miR-26 14 27
ppa-miR-26a MIMAT0002350 Pan paniscus miR-26a 14 27
mml-miR-26a-5p MIMAT0002349 Macaca mulatta miR-26a-5p 14 27
mne-miR-26a MIMAT0002348 Macaca nemestrina miR-26a 14 27
lla-miR-26a MIMAT0002347 Lagothrix lagotricha miR-26a 14 27
ppy-miR-26a MIMAT0002346 Pongo pygmaeus miR-26a 14 27
ggo-miR-26a MIMAT0002345 Gorilla gorilla miR-26a 14 27
ptr-miR-26a MIMAT0002344 Pan troglodytes miR-26a 14 27
ssc-miR-26a MIMAT0002135 Sus scrofa miR-26a 14 27
dre-miR-26b MIMAT0001795 Danio rerio miR-26b 14 27
dre-miR-26a-5p MIMAT0001794 Danio rerio miR-26a-5p 14 27
gga-miR-26a-5p MIMAT0001118 Gallus gallus miR-26a-5p 14 27
rno-miR-26b-5p MIMAT0000797 Rattus norvegicus miR-26b-5p 14 27
rno-miR-26a-5p MIMAT0000796 Rattus norvegicus miR-26a-5p 14 27
mmu-miR-26b-5p MIMAT0000534 Mus musculus miR-26b-5p 14 27
mmu-miR-26a-5p MIMAT0000533 Mus musculus miR-26a-5p 14 27
hsa-miR-26b-5p MIMAT0000083 Homo sapiens miR-26b-5p 14 27
hsa-miR-26a-5p MIMAT0000082 Homo sapiens miR-26a-5p 14 27
>mdv2-miR-M20-3p MIMAT0004462 Mareks disease miR-M20-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcaagtac 8
||||||||
Sbjct: 1 tcaagtac 8
>oha-miR-26-5p MIMAT0036861 Ophiophagus hannah miR-26-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>tch-miR-26a-2-5p MIMAT0036602 Tupaia chinensis miR-26a-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>tch-miR-26b-5p MIMAT0036550 Tupaia chinensis miR-26b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>tch-miR-26a-5p MIMAT0036488 Tupaia chinensis miR-26a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>chi-miR-26b-5p MIMAT0036103 Capra hircus miR-26b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>chi-miR-26a-5p MIMAT0036101 Capra hircus miR-26a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>efu-miR-26b MIMAT0035076 Eptesicus fuscus miR-26b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>efu-miR-26c MIMAT0035006 Eptesicus fuscus miR-26c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>efu-miR-26a MIMAT0034939 Eptesicus fuscus miR-26a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>cfa-miR-508a MIMAT0034419 Canis familiaris miR-508a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaagta 7
|||||||
Sbjct: 7 tcaagta 1
>ppc-miR-8336-5p MIMAT0033218 Pristionchus pacificus miR-8336-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaagta 7
|||||||
Sbjct: 7 tcaagta 1
>ssa-miR-26d-5p MIMAT0032571 Salmo salar miR-26d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>ssa-miR-26b-5p MIMAT0032569 Salmo salar miR-26b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>ssa-miR-26a-5p MIMAT0032563 Salmo salar miR-26a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>ssa-miR-10b-3p MIMAT0032296 Salmo salar miR-10b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 caagtac 8
|||||||
Sbjct: 1 caagtac 7
>prd-miR-7872-3p MIMAT0030489 Panagrellus redivivus miR-7872-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 caagtac 8
|||||||
Sbjct: 1 caagtac 7
>hhi-miR-26 MIMAT0030361 Hippoglossus hippoglossus miR-26
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>oar-miR-26b MIMAT0030052 Ovis aries miR-26b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>oar-miR-26a MIMAT0030051 Ovis aries miR-26a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>ipu-miR-26b MIMAT0029486 Ictalurus punctatus miR-26b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>ipu-miR-26a MIMAT0029485 Ictalurus punctatus miR-26a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>ccr-miR-26a MIMAT0026281 Cyprinus carpio miR-26a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>hme-miR-6303-5p MIMAT0025008 Heliconius melpomene miR-6303-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 caagtac 8
|||||||
Sbjct: 2 caagtac 8
>gma-miR1516d MIMAT0024927 Glycine max miR1516d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 caagtac 8
|||||||
Sbjct: 7 caagtac 1
>ggo-miR-26b MIMAT0024091 Gorilla gorilla miR-26b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>cgr-miR-26b-5p MIMAT0023872 Cricetulus griseus miR-26b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>cgr-miR-26a MIMAT0023871 Cricetulus griseus miR-26a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>hco-miR-5928e MIMAT0023481 Haemonchus contortus miR-5928e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>ola-miR-26 MIMAT0022575 Oryzias latipes miR-26
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>hsa-miR-5697 MIMAT0022490 Homo sapiens miR-5697
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 1 tcaagta 7
>aca-miR-26-5p MIMAT0021902 Anolis carolinensis miR-26-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>pma-miR-26b-5p MIMAT0019411 Petromyzon marinus miR-26b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>pma-miR-26a-5p MIMAT0019408 Petromyzon marinus miR-26a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>hsa-miR-4465 MIMAT0018992 Homo sapiens miR-4465
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>ahy-miR3509-5p MIMAT0016331 Arachis hypogaea miR3509-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaagta 7
|||||||
Sbjct: 8 tcaagta 2
>ppy-miR-26b MIMAT0015733 Pongo pygmaeus miR-26b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>tgu-miR-26-5p MIMAT0014516 Taeniopygia guttata miR-26-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>eca-miR-26a MIMAT0012975 Equus caballus miR-26a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>mdo-miR-26-5p MIMAT0012736 Monodelphis domestica miR-26-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>ptr-miR-26b MIMAT0008077 Pan troglodytes miR-26b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>ptr-miR-1297 MIMAT0008016 Pan troglodytes miR-1297
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>cfa-miR-26b MIMAT0006678 Canis familiaris miR-26b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>cfa-miR-26a MIMAT0006595 Canis familiaris miR-26a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>mml-miR-26b-5p MIMAT0006166 Macaca mulatta miR-26b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>oan-miR-26-5p MIMAT0006991 Ornithorhynchus anatinus miR-26-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>hsa-miR-1297 MIMAT0005886 Homo sapiens miR-1297
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>dme-miR-982-3p MIMAT0020879 Drosophila melanogaster miR-982-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaagta 7
|||||||
Sbjct: 8 tcaagta 2
>xtr-miR-26 MIMAT0003569 Xenopus tropicalis miR-26
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>bta-miR-26b MIMAT0003531 Bos taurus miR-26b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>bta-miR-26a MIMAT0003516 Bos taurus miR-26a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>tni-miR-26 MIMAT0003038 Tetraodon nigroviridis miR-26
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>fru-miR-26 MIMAT0003037 Fugu rubripes miR-26
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>ppa-miR-26a MIMAT0002350 Pan paniscus miR-26a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>mml-miR-26a-5p MIMAT0002349 Macaca mulatta miR-26a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>mne-miR-26a MIMAT0002348 Macaca nemestrina miR-26a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>lla-miR-26a MIMAT0002347 Lagothrix lagotricha miR-26a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>ppy-miR-26a MIMAT0002346 Pongo pygmaeus miR-26a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>ggo-miR-26a MIMAT0002345 Gorilla gorilla miR-26a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>ptr-miR-26a MIMAT0002344 Pan troglodytes miR-26a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>ssc-miR-26a MIMAT0002135 Sus scrofa miR-26a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>dre-miR-26b MIMAT0001795 Danio rerio miR-26b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>dre-miR-26a-5p MIMAT0001794 Danio rerio miR-26a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>gga-miR-26a-5p MIMAT0001118 Gallus gallus miR-26a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>rno-miR-26b-5p MIMAT0000797 Rattus norvegicus miR-26b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>rno-miR-26a-5p MIMAT0000796 Rattus norvegicus miR-26a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>mmu-miR-26b-5p MIMAT0000534 Mus musculus miR-26b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>mmu-miR-26a-5p MIMAT0000533 Mus musculus miR-26a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>hsa-miR-26b-5p MIMAT0000083 Homo sapiens miR-26b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
>hsa-miR-26a-5p MIMAT0000082 Homo sapiens miR-26a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagta 7
|||||||
Sbjct: 2 tcaagta 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 250
Number of extensions: 179
Number of successful extensions: 159
Number of sequences better than 100.0: 70
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 70
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
