BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-24-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dvi-miR-969-3p MIMAT0035589 Drosophila virilis miR-969-3p 14 20
nve-miR-9414-5p MIMAT0035369 Nematostella vectensis miR-9414-5p 14 20
sma-miR-8415-3p MIMAT0033535 Schistosoma mansoni miR-8415-3p 14 20
mtr-miR7696b-5p MIMAT0029988 Medicago truncatula miR7696b-5p 14 20
mtr-miR7696a-5p MIMAT0029986 Medicago truncatula miR7696a-5p 14 20
mdo-miR-7298-5p MIMAT0028584 Monodelphis domestica miR-7298-5p 14 20
ath-miR5647 MIMAT0022411 Arabidopsis thaliana miR5647 14 20
bmo-miR-3382-5p MIMAT0015575 Bombyx mori miR-3382-5p 14 20
rlcv-miR-rL1-24-5p MIMAT0016947 Rhesus lymphocryptovirus miR-rL1... 14 20
dsi-miR-969-3p MIMAT0012480 Drosophila simulans miR-969-3p 14 20
dps-miR-969-3p MIMAT0012276 Drosophila pseudoobscura miR-969-3p 14 20
sme-miR-2163-5p MIMAT0012154 Schmidtea mediterranea miR-2163-5p 14 20
dme-miR-969-3p MIMAT0020866 Drosophila melanogaster miR-969-3p 14 20
ebv-miR-BART18-5p MIMAT0003717 Epstein Barr miR-BART18-5p 14 20
ata-miR169d-3p MIMAT0037207 Aegilops tauschii miR169d-3p 12 80
chi-miR-2284e MIMAT0036096 Capra hircus miR-2284e 12 80
efu-miR-9226 MIMAT0034828 Eptesicus fuscus miR-9226 12 80
ssa-miR-152-5p MIMAT0032385 Salmo salar miR-152-5p 12 80
stu-miR8050-3p MIMAT0030976 Solanum tuberosum miR8050-3p 12 80
prd-miR-7918c-3p MIMAT0030783 Panagrellus redivivus miR-7918c-3p 12 80
prd-miR-7918d-3p MIMAT0030781 Panagrellus redivivus miR-7918d-3p 12 80
prd-miR-7918f-3p MIMAT0030677 Panagrellus redivivus miR-7918f-3p 12 80
prd-miR-7918e-3p MIMAT0030675 Panagrellus redivivus miR-7918e-3p 12 80
prd-miR-7918b-3p MIMAT0030609 Panagrellus redivivus miR-7918b-3p 12 80
bdi-miR7737-3p MIMAT0030211 Brachypodium distachyon miR7737-3p 12 80
mtr-miR169l-3p MIMAT0030002 Medicago truncatula miR169l-3p 12 80
lja-miR7534 MIMAT0029359 Lotus japonicus miR7534 12 80
mmu-miR-7217-5p MIMAT0028402 Mus musculus miR-7217-5p 12 80
sbi-miR6233-3p MIMAT0026449 Sorghum bicolor miR6233-3p 12 80
sbi-miR6218-3p MIMAT0026397 Sorghum bicolor miR6218-3p 12 80
bta-miR-378b MIMAT0025535 Bos taurus miR-378b 12 80
hsa-miR-6513-3p MIMAT0025483 Homo sapiens miR-6513-3p 12 80
osa-miR5814 MIMAT0023286 Oryza sativa miR5814 12 80
gma-miR5776 MIMAT0023181 Glycine max miR5776 12 80
hsa-miR-5697 MIMAT0022490 Homo sapiens miR-5697 12 80
mmu-miR-5616-3p MIMAT0022360 Mus musculus miR-5616-3p 12 80
osa-miR5541 MIMAT0022177 Oryza sativa miR5541 12 80
mtr-miR5258 MIMAT0021258 Medicago truncatula miR5258 12 80
mtr-miR5255 MIMAT0021253 Medicago truncatula miR5255 12 80
tca-miR-375-5p MIMAT0018794 Tribolium castaneum miR-375-5p 12 80
cin-miR-4052-3p MIMAT0016594 Ciona intestinalis miR-4052-3p 12 80
cin-miR-4010-3p MIMAT0016507 Ciona intestinalis miR-4010-3p 12 80
ahy-miR3509-5p MIMAT0016331 Arachis hypogaea miR3509-5p 12 80
aly-miR169b-3p MIMAT0017488 Arabidopsis lyrata miR169b-3p 12 80
aly-miR169a-3p MIMAT0017486 Arabidopsis lyrata miR169a-3p 12 80
zma-miR169r-3p MIMAT0015329 Zea mays miR169r-3p 12 80
bmo-miR-2795 MIMAT0013695 Bombyx mori miR-2795 12 80
cte-miR-216c MIMAT0013570 Capitella teleta miR-216c 12 80
dps-miR-2560-3p MIMAT0012383 Drosophila pseudoobscura miR-2560-3p 12 80
bta-miR-2363 MIMAT0011901 Bos taurus miR-2363 12 80
dvi-miR-125-3p MIMAT0032049 Drosophila virilis miR-125-3p 12 80
dvi-miR-314-5p MIMAT0032041 Drosophila virilis miR-314-5p 12 80
tca-miR-100-3p MIMAT0019113 Tribolium castaneum miR-100-3p 12 80
gga-miR-1731-5p MIMAT0007633 Gallus gallus miR-1731-5p 12 80
gma-miR1516a-5p MIMAT0020937 Glycine max miR1516a-5p 12 80
ppt-miR1069-5p MIMAT0005196 Physcomitrella patens miR1069-5p 12 80
mdv2-miR-M20-3p MIMAT0004462 Mareks disease miR-M20-3p 12 80
dme-miR-982-3p MIMAT0020879 Drosophila melanogaster miR-982-3p 12 80
mmu-miR-327 MIMAT0004867 Mus musculus miR-327 12 80
zma-miR169b-3p MIMAT0015141 Zea mays miR169b-3p 12 80
zma-miR169a-3p MIMAT0015140 Zea mays miR169a-3p 12 80
ath-miR169b-3p MIMAT0031897 Arabidopsis thaliana miR169b-3p 12 80
dme-miR-314-5p MIMAT0020840 Drosophila melanogaster miR-314-5p 12 80
dme-miR-125-3p MIMAT0020831 Drosophila melanogaster miR-125-3p 12 80
ath-miR169a-3p MIMAT0031886 Arabidopsis thaliana miR169a-3p 12 80
>dvi-miR-969-3p MIMAT0035589 Drosophila virilis miR-969-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaagtt 7
|||||||
Sbjct: 7 tcaagtt 1
>nve-miR-9414-5p MIMAT0035369 Nematostella vectensis miR-9414-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaagtt 7
|||||||
Sbjct: 7 tcaagtt 1
>sma-miR-8415-3p MIMAT0033535 Schistosoma mansoni miR-8415-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaagtt 7
|||||||
Sbjct: 7 tcaagtt 1
>mtr-miR7696b-5p MIMAT0029988 Medicago truncatula miR7696b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagtt 7
|||||||
Sbjct: 1 tcaagtt 7
>mtr-miR7696a-5p MIMAT0029986 Medicago truncatula miR7696a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagtt 7
|||||||
Sbjct: 1 tcaagtt 7
>mdo-miR-7298-5p MIMAT0028584 Monodelphis domestica miR-7298-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagtt 7
|||||||
Sbjct: 1 tcaagtt 7
>ath-miR5647 MIMAT0022411 Arabidopsis thaliana miR5647
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagtt 7
|||||||
Sbjct: 1 tcaagtt 7
>bmo-miR-3382-5p MIMAT0015575 Bombyx mori miR-3382-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagtt 7
|||||||
Sbjct: 1 tcaagtt 7
>rlcv-miR-rL1-24-5p MIMAT0016947 Rhesus lymphocryptovirus
miR-rL1-24-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagtt 7
|||||||
Sbjct: 2 tcaagtt 8
>dsi-miR-969-3p MIMAT0012480 Drosophila simulans miR-969-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaagtt 7
|||||||
Sbjct: 7 tcaagtt 1
>dps-miR-969-3p MIMAT0012276 Drosophila pseudoobscura miR-969-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaagtt 7
|||||||
Sbjct: 7 tcaagtt 1
>sme-miR-2163-5p MIMAT0012154 Schmidtea mediterranea miR-2163-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaagtt 7
|||||||
Sbjct: 8 tcaagtt 2
>dme-miR-969-3p MIMAT0020866 Drosophila melanogaster miR-969-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaagtt 7
|||||||
Sbjct: 7 tcaagtt 1
>ebv-miR-BART18-5p MIMAT0003717 Epstein Barr miR-BART18-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaagtt 7
|||||||
Sbjct: 1 tcaagtt 7
>ata-miR169d-3p MIMAT0037207 Aegilops tauschii miR169d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 3 caagtt 8
>chi-miR-2284e MIMAT0036096 Capra hircus miR-2284e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caagtt 7
||||||
Sbjct: 8 caagtt 3
>efu-miR-9226 MIMAT0034828 Eptesicus fuscus miR-9226
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaagt 6
||||||
Sbjct: 1 tcaagt 6
>ssa-miR-152-5p MIMAT0032385 Salmo salar miR-152-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 1 caagtt 6
>stu-miR8050-3p MIMAT0030976 Solanum tuberosum miR8050-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaagt 6
||||||
Sbjct: 8 tcaagt 3
>prd-miR-7918c-3p MIMAT0030783 Panagrellus redivivus
miR-7918c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 3 caagtt 8
>prd-miR-7918d-3p MIMAT0030781 Panagrellus redivivus
miR-7918d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 3 caagtt 8
>prd-miR-7918f-3p MIMAT0030677 Panagrellus redivivus
miR-7918f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 2 caagtt 7
>prd-miR-7918e-3p MIMAT0030675 Panagrellus redivivus
miR-7918e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 3 caagtt 8
>prd-miR-7918b-3p MIMAT0030609 Panagrellus redivivus
miR-7918b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 3 caagtt 8
>bdi-miR7737-3p MIMAT0030211 Brachypodium distachyon miR7737-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaagt 6
||||||
Sbjct: 6 tcaagt 1
>mtr-miR169l-3p MIMAT0030002 Medicago truncatula miR169l-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 3 caagtt 8
>lja-miR7534 MIMAT0029359 Lotus japonicus miR7534
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caagtt 7
||||||
Sbjct: 8 caagtt 3
>mmu-miR-7217-5p MIMAT0028402 Mus musculus miR-7217-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caagtt 7
||||||
Sbjct: 6 caagtt 1
>sbi-miR6233-3p MIMAT0026449 Sorghum bicolor miR6233-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 1 caagtt 6
>sbi-miR6218-3p MIMAT0026397 Sorghum bicolor miR6218-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 2 caagtt 7
>bta-miR-378b MIMAT0025535 Bos taurus miR-378b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaagt 6
||||||
Sbjct: 6 tcaagt 1
>hsa-miR-6513-3p MIMAT0025483 Homo sapiens miR-6513-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaagt 6
||||||
Sbjct: 1 tcaagt 6
>osa-miR5814 MIMAT0023286 Oryza sativa miR5814
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaagt 6
||||||
Sbjct: 3 tcaagt 8
>gma-miR5776 MIMAT0023181 Glycine max miR5776
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caagtt 7
||||||
Sbjct: 6 caagtt 1
>hsa-miR-5697 MIMAT0022490 Homo sapiens miR-5697
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaagt 6
||||||
Sbjct: 1 tcaagt 6
>mmu-miR-5616-3p MIMAT0022360 Mus musculus miR-5616-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caagtt 7
||||||
Sbjct: 6 caagtt 1
>osa-miR5541 MIMAT0022177 Oryza sativa miR5541
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaagt 6
||||||
Sbjct: 1 tcaagt 6
>mtr-miR5258 MIMAT0021258 Medicago truncatula miR5258
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaagt 6
||||||
Sbjct: 1 tcaagt 6
>mtr-miR5255 MIMAT0021253 Medicago truncatula miR5255
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaagt 6
||||||
Sbjct: 8 tcaagt 3
>tca-miR-375-5p MIMAT0018794 Tribolium castaneum miR-375-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaagt 6
||||||
Sbjct: 6 tcaagt 1
>cin-miR-4052-3p MIMAT0016594 Ciona intestinalis miR-4052-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaagt 6
||||||
Sbjct: 8 tcaagt 3
>cin-miR-4010-3p MIMAT0016507 Ciona intestinalis miR-4010-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 1 caagtt 6
>ahy-miR3509-5p MIMAT0016331 Arachis hypogaea miR3509-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaagt 6
||||||
Sbjct: 8 tcaagt 3
>aly-miR169b-3p MIMAT0017488 Arabidopsis lyrata miR169b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 3 caagtt 8
>aly-miR169a-3p MIMAT0017486 Arabidopsis lyrata miR169a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 3 caagtt 8
>zma-miR169r-3p MIMAT0015329 Zea mays miR169r-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 3 caagtt 8
>bmo-miR-2795 MIMAT0013695 Bombyx mori miR-2795
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 1 caagtt 6
>cte-miR-216c MIMAT0013570 Capitella teleta miR-216c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 1 caagtt 6
>dps-miR-2560-3p MIMAT0012383 Drosophila pseudoobscura
miR-2560-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaagt 6
||||||
Sbjct: 3 tcaagt 8
>bta-miR-2363 MIMAT0011901 Bos taurus miR-2363
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caagtt 7
||||||
Sbjct: 8 caagtt 3
>dvi-miR-125-3p MIMAT0032049 Drosophila virilis miR-125-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 2 caagtt 7
>dvi-miR-314-5p MIMAT0032041 Drosophila virilis miR-314-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caagtt 7
||||||
Sbjct: 8 caagtt 3
>tca-miR-100-3p MIMAT0019113 Tribolium castaneum miR-100-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 1 caagtt 6
>gga-miR-1731-5p MIMAT0007633 Gallus gallus miR-1731-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaagt 6
||||||
Sbjct: 6 tcaagt 1
>gma-miR1516a-5p MIMAT0020937 Glycine max miR1516a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 1 caagtt 6
>ppt-miR1069-5p MIMAT0005196 Physcomitrella patens miR1069-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaagt 6
||||||
Sbjct: 3 tcaagt 8
>mdv2-miR-M20-3p MIMAT0004462 Mareks disease miR-M20-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaagt 6
||||||
Sbjct: 1 tcaagt 6
>dme-miR-982-3p MIMAT0020879 Drosophila melanogaster miR-982-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaagt 6
||||||
Sbjct: 8 tcaagt 3
>mmu-miR-327 MIMAT0004867 Mus musculus miR-327
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaagt 6
||||||
Sbjct: 6 tcaagt 1
>zma-miR169b-3p MIMAT0015141 Zea mays miR169b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 3 caagtt 8
>zma-miR169a-3p MIMAT0015140 Zea mays miR169a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 3 caagtt 8
>ath-miR169b-3p MIMAT0031897 Arabidopsis thaliana miR169b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 3 caagtt 8
>dme-miR-314-5p MIMAT0020840 Drosophila melanogaster miR-314-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caagtt 7
||||||
Sbjct: 8 caagtt 3
>dme-miR-125-3p MIMAT0020831 Drosophila melanogaster miR-125-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 2 caagtt 7
>ath-miR169a-3p MIMAT0031886 Arabidopsis thaliana miR169a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caagtt 7
||||||
Sbjct: 3 caagtt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 159
Number of extensions: 145
Number of successful extensions: 65
Number of sequences better than 100.0: 65
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 65
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
