BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-19-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-197-3p MIMAT0036035 Capra hircus miR-197-3p 14 20
gsa-miR-9403-3p MIMAT0035355 Gyrodactylus salaris miR-9403-3p 14 20
efu-miR-9364 MIMAT0035181 Eptesicus fuscus miR-9364 14 20
efu-miR-9323 MIMAT0035050 Eptesicus fuscus miR-9323 14 20
mmu-miR-7677-5p MIMAT0029868 Mus musculus miR-7677-5p 14 20
mdo-miR-7288-3p MIMAT0028559 Monodelphis domestica miR-7288-3p 14 20
mdo-miR-7254-5p MIMAT0028474 Monodelphis domestica miR-7254-5p 14 20
ggo-miR-197 MIMAT0024180 Gorilla gorilla miR-197 14 20
mmu-miR-5622-5p MIMAT0022371 Mus musculus miR-5622-5p 14 20
bdi-miR166g-3p MIMAT0020710 Brachypodium distachyon miR166g-3p 14 20
eca-miR-197 MIMAT0012959 Equus caballus miR-197 14 20
bta-miR-197 MIMAT0009257 Bos taurus miR-197 14 20
cfa-miR-197 MIMAT0006698 Canis familiaris miR-197 14 20
mml-miR-197-3p MIMAT0006230 Macaca mulatta miR-197-3p 14 20
ppa-miR-197 MIMAT0002604 Pan paniscus miR-197 14 20
age-miR-197 MIMAT0002603 Ateles geoffroyi miR-197 14 20
mne-miR-197 MIMAT0002602 Macaca nemestrina miR-197 14 20
ppy-miR-197 MIMAT0002601 Pongo pygmaeus miR-197 14 20
ptr-miR-197 MIMAT0002600 Pan troglodytes miR-197 14 20
hsa-miR-197-3p MIMAT0000227 Homo sapiens miR-197-3p 14 20
oha-miR-1905 MIMAT0036774 Ophiophagus hannah miR-1905 12 80
oha-miR-1306-5p MIMAT0036685 Ophiophagus hannah miR-1306-5p 12 80
efu-miR-9202 MIMAT0034788 Eptesicus fuscus miR-9202 12 80
bbe-miR-2062-3p MIMAT0031624 Branchiostoma belcheri miR-2062-3p 12 80
bbe-miR-2057-3p MIMAT0031614 Branchiostoma belcheri miR-2057-3p 12 80
mmu-miR-497b MIMAT0031404 Mus musculus miR-497b 12 80
gga-miR-7467-3p MIMAT0029089 Gallus gallus miR-7467-3p 12 80
oan-miR-7427-5p MIMAT0029004 Ornithorhynchus anatinus miR-7427-5p 12 80
mmu-miR-7051-5p MIMAT0028006 Mus musculus miR-7051-5p 12 80
mmu-miR-7044-5p MIMAT0027992 Mus musculus miR-7044-5p 12 80
mmu-miR-6926-3p MIMAT0027753 Mus musculus miR-6926-3p 12 80
mmu-miR-6900-3p MIMAT0027701 Mus musculus miR-6900-3p 12 80
hsa-miR-6511b-3p MIMAT0025848 Homo sapiens miR-6511b-3p 12 80
gga-miR-6685-3p MIMAT0025791 Gallus gallus miR-6685-3p 12 80
hsa-miR-6511a-3p MIMAT0025479 Homo sapiens miR-6511a-3p 12 80
cca-miR6108f MIMAT0024559 Cynara cardunculus miR6108f 12 80
cel-miR-356b-5p MIMAT0022311 Caenorhabditis elegans miR-356b-5p 12 80
rgl-miR5140 MIMAT0020651 Rehmannia glutinosa miR5140 12 80
pma-miR-4561 MIMAT0019593 Petromyzon marinus miR-4561 12 80
ame-miR-3751 MIMAT0018521 Apis mellifera miR-3751 12 80
hsa-miR-4299 MIMAT0016851 Homo sapiens miR-4299 12 80
ahy-miR3521 MIMAT0016348 Arachis hypogaea miR3521 12 80
ppy-miR-1226 MIMAT0016162 Pongo pygmaeus miR-1226 12 80
rlcv-miR-rL1-19-3p MIMAT0019187 Rhesus lymphocryptovirus miR-rL1... 12 80
eca-miR-770-5p MIMAT0013174 Equus caballus miR-770-5p 12 80
eca-miR-876-3p MIMAT0013122 Equus caballus miR-876-3p 12 80
eca-miR-1905c MIMAT0012985 Equus caballus miR-1905c 12 80
eca-miR-1905a MIMAT0012897 Equus caballus miR-1905a 12 80
bfl-miR-2062-3p MIMAT0019169 Branchiostoma floridae miR-2062-3p 12 80
mmu-miR-1306-5p MIMAT0019136 Mus musculus miR-1306-5p 12 80
osa-miR1854-5p MIMAT0007775 Oryza sativa miR1854-5p 12 80
gga-miR-1758 MIMAT0007665 Gallus gallus miR-1758 12 80
gga-miR-1656 MIMAT0007535 Gallus gallus miR-1656 12 80
gga-miR-1354 MIMAT0007446 Gallus gallus miR-1354 12 80
gga-miR-1553-3p MIMAT0007410 Gallus gallus miR-1553-3p 12 80
cin-miR-200-5p MIMAT0015263 Ciona intestinalis miR-200-5p 12 80
osa-miR1430 MIMAT0005964 Oryza sativa miR1430 12 80
mml-miR-1240 MIMAT0005861 Macaca mulatta miR-1240 12 80
mml-miR-1226 MIMAT0005579 Macaca mulatta miR-1226 12 80
ptr-miR-1226 MIMAT0005578 Pan troglodytes miR-1226 12 80
hsa-miR-1226-3p MIMAT0005577 Homo sapiens miR-1226-3p 12 80
mcmv-miR-M55-1 MIMAT0005547 Mouse cytomegalovirus miR-M55-1 12 80
rno-miR-770-5p MIMAT0005338 Rattus norvegicus miR-770-5p 12 80
smo-miR1115-3p MIMAT0005274 Selaginella moellendorffii miR1115-3p 12 80
ppt-miR1046-3p MIMAT0005160 Physcomitrella patens miR1046-3p 12 80
dme-miR-976-5p MIMAT0020873 Drosophila melanogaster miR-976-5p 12 80
mmu-miR-770-5p MIMAT0004822 Mus musculus miR-770-5p 12 80
rlcv-miR-rL1-5-3p MIMAT0003433 Rhesus lymphocryptovirus miR-rL1-... 12 80
rlcv-miR-rL1-4-3p MIMAT0003431 Rhesus lymphocryptovirus miR-rL1-... 12 80
ebv-miR-BART3-3p MIMAT0003411 Epstein Barr miR-BART3-3p 12 80
hcmv-miR-UL22A-3p MIMAT0001575 Human cytomegalovirus miR-UL22A-3p 12 80
osa-miR169i-5p.2 MIMAT0020917 Oryza sativa miR169i-5p.2 12 80
>chi-miR-197-3p MIMAT0036035 Capra hircus miR-197-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 2 tcaccac 8
>gsa-miR-9403-3p MIMAT0035355 Gyrodactylus salaris miR-9403-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaccac 7
|||||||
Sbjct: 8 tcaccac 2
>efu-miR-9364 MIMAT0035181 Eptesicus fuscus miR-9364
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 1 tcaccac 7
>efu-miR-9323 MIMAT0035050 Eptesicus fuscus miR-9323
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 1 tcaccac 7
>mmu-miR-7677-5p MIMAT0029868 Mus musculus miR-7677-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaccac 7
|||||||
Sbjct: 8 tcaccac 2
>mdo-miR-7288-3p MIMAT0028559 Monodelphis domestica miR-7288-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 1 tcaccac 7
>mdo-miR-7254-5p MIMAT0028474 Monodelphis domestica miR-7254-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 1 tcaccac 7
>ggo-miR-197 MIMAT0024180 Gorilla gorilla miR-197
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 2 tcaccac 8
>mmu-miR-5622-5p MIMAT0022371 Mus musculus miR-5622-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 2 tcaccac 8
>bdi-miR166g-3p MIMAT0020710 Brachypodium distachyon miR166g-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaccac 7
|||||||
Sbjct: 8 tcaccac 2
>eca-miR-197 MIMAT0012959 Equus caballus miR-197
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 2 tcaccac 8
>bta-miR-197 MIMAT0009257 Bos taurus miR-197
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 2 tcaccac 8
>cfa-miR-197 MIMAT0006698 Canis familiaris miR-197
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 2 tcaccac 8
>mml-miR-197-3p MIMAT0006230 Macaca mulatta miR-197-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 2 tcaccac 8
>ppa-miR-197 MIMAT0002604 Pan paniscus miR-197
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 2 tcaccac 8
>age-miR-197 MIMAT0002603 Ateles geoffroyi miR-197
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 2 tcaccac 8
>mne-miR-197 MIMAT0002602 Macaca nemestrina miR-197
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 2 tcaccac 8
>ppy-miR-197 MIMAT0002601 Pongo pygmaeus miR-197
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 2 tcaccac 8
>ptr-miR-197 MIMAT0002600 Pan troglodytes miR-197
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 2 tcaccac 8
>hsa-miR-197-3p MIMAT0000227 Homo sapiens miR-197-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaccac 7
|||||||
Sbjct: 2 tcaccac 8
>oha-miR-1905 MIMAT0036774 Ophiophagus hannah miR-1905
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caccac 7
||||||
Sbjct: 1 caccac 6
>oha-miR-1306-5p MIMAT0036685 Ophiophagus hannah miR-1306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caccac 7
||||||
Sbjct: 1 caccac 6
>efu-miR-9202 MIMAT0034788 Eptesicus fuscus miR-9202
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 6 tcacca 1
>bbe-miR-2062-3p MIMAT0031624 Branchiostoma belcheri miR-2062-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 8 tcacca 3
>bbe-miR-2057-3p MIMAT0031614 Branchiostoma belcheri miR-2057-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caccac 7
||||||
Sbjct: 8 caccac 3
>mmu-miR-497b MIMAT0031404 Mus musculus miR-497b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caccac 7
||||||
Sbjct: 1 caccac 6
>gga-miR-7467-3p MIMAT0029089 Gallus gallus miR-7467-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caccac 7
||||||
Sbjct: 1 caccac 6
>oan-miR-7427-5p MIMAT0029004 Ornithorhynchus anatinus
miR-7427-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 6 tcacca 1
>mmu-miR-7051-5p MIMAT0028006 Mus musculus miR-7051-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacca 6
||||||
Sbjct: 1 tcacca 6
>mmu-miR-7044-5p MIMAT0027992 Mus musculus miR-7044-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caccac 7
||||||
Sbjct: 8 caccac 3
>mmu-miR-6926-3p MIMAT0027753 Mus musculus miR-6926-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacca 6
||||||
Sbjct: 1 tcacca 6
>mmu-miR-6900-3p MIMAT0027701 Mus musculus miR-6900-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 6 tcacca 1
>hsa-miR-6511b-3p MIMAT0025848 Homo sapiens miR-6511b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacca 6
||||||
Sbjct: 3 tcacca 8
>gga-miR-6685-3p MIMAT0025791 Gallus gallus miR-6685-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 6 tcacca 1
>hsa-miR-6511a-3p MIMAT0025479 Homo sapiens miR-6511a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacca 6
||||||
Sbjct: 3 tcacca 8
>cca-miR6108f MIMAT0024559 Cynara cardunculus miR6108f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 8 tcacca 3
>cel-miR-356b-5p MIMAT0022311 Caenorhabditis elegans miR-356b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 6 tcacca 1
>rgl-miR5140 MIMAT0020651 Rehmannia glutinosa miR5140
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 8 tcacca 3
>pma-miR-4561 MIMAT0019593 Petromyzon marinus miR-4561
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 8 tcacca 3
>ame-miR-3751 MIMAT0018521 Apis mellifera miR-3751
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caccac 7
||||||
Sbjct: 8 caccac 3
>hsa-miR-4299 MIMAT0016851 Homo sapiens miR-4299
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 8 tcacca 3
>ahy-miR3521 MIMAT0016348 Arachis hypogaea miR3521
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 6 tcacca 1
>ppy-miR-1226 MIMAT0016162 Pongo pygmaeus miR-1226
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacca 6
||||||
Sbjct: 1 tcacca 6
>rlcv-miR-rL1-19-3p MIMAT0019187 Rhesus lymphocryptovirus
miR-rL1-19-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacca 6
||||||
Sbjct: 3 tcacca 8
>eca-miR-770-5p MIMAT0013174 Equus caballus miR-770-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caccac 7
||||||
Sbjct: 3 caccac 8
>eca-miR-876-3p MIMAT0013122 Equus caballus miR-876-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caccac 7
||||||
Sbjct: 8 caccac 3
>eca-miR-1905c MIMAT0012985 Equus caballus miR-1905c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caccac 7
||||||
Sbjct: 1 caccac 6
>eca-miR-1905a MIMAT0012897 Equus caballus miR-1905a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caccac 7
||||||
Sbjct: 1 caccac 6
>bfl-miR-2062-3p MIMAT0019169 Branchiostoma floridae miR-2062-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 8 tcacca 3
>mmu-miR-1306-5p MIMAT0019136 Mus musculus miR-1306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caccac 7
||||||
Sbjct: 1 caccac 6
>osa-miR1854-5p MIMAT0007775 Oryza sativa miR1854-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 6 tcacca 1
>gga-miR-1758 MIMAT0007665 Gallus gallus miR-1758
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacca 6
||||||
Sbjct: 1 tcacca 6
>gga-miR-1656 MIMAT0007535 Gallus gallus miR-1656
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacca 6
||||||
Sbjct: 1 tcacca 6
>gga-miR-1354 MIMAT0007446 Gallus gallus miR-1354
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 8 tcacca 3
>gga-miR-1553-3p MIMAT0007410 Gallus gallus miR-1553-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caccac 7
||||||
Sbjct: 7 caccac 2
>cin-miR-200-5p MIMAT0015263 Ciona intestinalis miR-200-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacca 6
||||||
Sbjct: 1 tcacca 6
>osa-miR1430 MIMAT0005964 Oryza sativa miR1430
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 6 tcacca 1
>mml-miR-1240 MIMAT0005861 Macaca mulatta miR-1240
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacca 6
||||||
Sbjct: 1 tcacca 6
>mml-miR-1226 MIMAT0005579 Macaca mulatta miR-1226
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacca 6
||||||
Sbjct: 1 tcacca 6
>ptr-miR-1226 MIMAT0005578 Pan troglodytes miR-1226
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacca 6
||||||
Sbjct: 1 tcacca 6
>hsa-miR-1226-3p MIMAT0005577 Homo sapiens miR-1226-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacca 6
||||||
Sbjct: 1 tcacca 6
>mcmv-miR-M55-1 MIMAT0005547 Mouse cytomegalovirus miR-M55-1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 6 tcacca 1
>rno-miR-770-5p MIMAT0005338 Rattus norvegicus miR-770-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caccac 7
||||||
Sbjct: 3 caccac 8
>smo-miR1115-3p MIMAT0005274 Selaginella moellendorffii
miR1115-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacca 6
||||||
Sbjct: 1 tcacca 6
>ppt-miR1046-3p MIMAT0005160 Physcomitrella patens miR1046-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 6 tcacca 1
>dme-miR-976-5p MIMAT0020873 Drosophila melanogaster miR-976-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 8 tcacca 3
>mmu-miR-770-5p MIMAT0004822 Mus musculus miR-770-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caccac 7
||||||
Sbjct: 3 caccac 8
>rlcv-miR-rL1-5-3p MIMAT0003433 Rhesus lymphocryptovirus
miR-rL1-5-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caccac 7
||||||
Sbjct: 3 caccac 8
>rlcv-miR-rL1-4-3p MIMAT0003431 Rhesus lymphocryptovirus
miR-rL1-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caccac 7
||||||
Sbjct: 1 caccac 6
>ebv-miR-BART3-3p MIMAT0003411 Epstein Barr miR-BART3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caccac 7
||||||
Sbjct: 3 caccac 8
>hcmv-miR-UL22A-3p MIMAT0001575 Human cytomegalovirus
miR-UL22A-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacca 6
||||||
Sbjct: 1 tcacca 6
>osa-miR169i-5p.2 MIMAT0020917 Oryza sativa miR169i-5p.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacca 6
||||||
Sbjct: 6 tcacca 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 109
Number of extensions: 89
Number of successful extensions: 72
Number of sequences better than 100.0: 72
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 72
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)