BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-22-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8277-5p MIMAT0033053 Pristionchus pacificus miR-8277-5p 16 6.9
ahy-miR3514-3p MIMAT0016340 Arachis hypogaea miR3514-3p 16 6.9
rlcv-miR-rL1-22-3p MIMAT0016944 Rhesus lymphocryptovirus miR-rL1... 16 6.9
oar-miR-433-5p MIMAT0019241 Ovis aries miR-433-5p 14 27
cte-miR-2691-5p MIMAT0013544 Capitella teleta miR-2691-5p 14 27
mml-miR-433-5p MIMAT0026875 Macaca mulatta miR-433-5p 14 27
rlcv-miR-rL1-12-3p MIMAT0003442 Rhesus lymphocryptovirus miR-rL1... 14 27
rno-miR-433-5p MIMAT0017192 Rattus norvegicus miR-433-5p 14 27
hsa-miR-433-5p MIMAT0026554 Homo sapiens miR-433-5p 14 27
mmu-miR-433-5p MIMAT0001419 Mus musculus miR-433-5p 14 27
>ppc-miR-8277-5p MIMAT0033053 Pristionchus pacificus miR-8277-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tcaccgtt 8
||||||||
Sbjct: 8 tcaccgtt 1
>ahy-miR3514-3p MIMAT0016340 Arachis hypogaea miR3514-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcaccgtt 8
||||||||
Sbjct: 1 tcaccgtt 8
>rlcv-miR-rL1-22-3p MIMAT0016944 Rhesus lymphocryptovirus
miR-rL1-22-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcaccgtt 8
||||||||
Sbjct: 1 tcaccgtt 8
>oar-miR-433-5p MIMAT0019241 Ovis aries miR-433-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaccgt 7
|||||||
Sbjct: 8 tcaccgt 2
>cte-miR-2691-5p MIMAT0013544 Capitella teleta miR-2691-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaccgt 7
|||||||
Sbjct: 8 tcaccgt 2
>mml-miR-433-5p MIMAT0026875 Macaca mulatta miR-433-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaccgt 7
|||||||
Sbjct: 8 tcaccgt 2
>rlcv-miR-rL1-12-3p MIMAT0003442 Rhesus lymphocryptovirus
miR-rL1-12-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 caccgtt 8
|||||||
Sbjct: 7 caccgtt 1
>rno-miR-433-5p MIMAT0017192 Rattus norvegicus miR-433-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaccgt 7
|||||||
Sbjct: 8 tcaccgt 2
>hsa-miR-433-5p MIMAT0026554 Homo sapiens miR-433-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaccgt 7
|||||||
Sbjct: 8 tcaccgt 2
>mmu-miR-433-5p MIMAT0001419 Mus musculus miR-433-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaccgt 7
|||||||
Sbjct: 8 tcaccgt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 198
Number of extensions: 185
Number of successful extensions: 171
Number of sequences better than 100.0: 10
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
