BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b8-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8320-3p MIMAT0033181 Pristionchus pacificus miR-8320-3p 14 20
ppy-miR-921 MIMAT0016131 Pongo pygmaeus miR-921 14 20
rlcv-miR-rL1-23-5p MIMAT0016945 Rhesus lymphocryptovirus miR-rL1... 14 20
ebv-miR-BART21-5p MIMAT0010130 Epstein Barr miR-BART21-5p 14 20
hsa-miR-921 MIMAT0004971 Homo sapiens miR-921 14 20
ssc-miR-9837-5p MIMAT0037055 Sus scrofa miR-9837-5p 12 80
chi-miR-34c-3p MIMAT0036170 Capra hircus miR-34c-3p 12 80
chi-miR-34b-3p MIMAT0036168 Capra hircus miR-34b-3p 12 80
chi-miR-28-3p MIMAT0036110 Capra hircus miR-28-3p 12 80
efu-miR-34c MIMAT0035046 Eptesicus fuscus miR-34c 12 80
cfa-miR-8860 MIMAT0034355 Canis familiaris miR-8860 12 80
gra-miR8646 MIMAT0034004 Gossypium raimondii miR8646 12 80
pxy-miR-7a MIMAT0033762 Plutella xylostella miR-7a 12 80
str-miR-71-3p MIMAT0033318 Strongyloides ratti miR-71-3p 12 80
ppc-miR-71b-3p MIMAT0033007 Pristionchus pacificus miR-71b-3p 12 80
prd-miR-71-3p MIMAT0030461 Panagrellus redivivus miR-71-3p 12 80
bdi-miR7775-3p MIMAT0030301 Brachypodium distachyon miR7775-3p 12 80
ipu-miR-34c MIMAT0029505 Ictalurus punctatus miR-34c 12 80
oan-miR-34b-3p MIMAT0028989 Ornithorhynchus anatinus miR-34b-3p 12 80
oan-miR-7407-5p MIMAT0028960 Ornithorhynchus anatinus miR-7407-5p 12 80
mdo-miR-7382-3p MIMAT0028821 Monodelphis domestica miR-7382-3p 12 80
mdo-miR-34b-3p MIMAT0028589 Monodelphis domestica miR-34b-3p 12 80
mdo-miR-34c-3p MIMAT0028587 Monodelphis domestica miR-34c-3p 12 80
ptc-miR6472 MIMAT0025211 Populus trichocarpa miR6472 12 80
hme-miR-6311-3p MIMAT0025018 Heliconius melpomene miR-6311-3p 12 80
hme-miR-71 MIMAT0024985 Heliconius melpomene miR-71 12 80
ppe-miR6285 MIMAT0027316 Prunus persica miR6285 12 80
ppy-miR-3174 MIMAT0024407 Pongo pygmaeus miR-3174 12 80
cgr-miR-34c-3p MIMAT0023930 Cricetulus griseus miR-34c-3p 12 80
cgr-miR-34b-3p MIMAT0023928 Cricetulus griseus miR-34b-3p 12 80
cgr-miR-28-3p MIMAT0023879 Cricetulus griseus miR-28-3p 12 80
hsa-miR-6080 MIMAT0023705 Homo sapiens miR-6080 12 80
hsa-miR-6073 MIMAT0023698 Homo sapiens miR-6073 12 80
hco-miR-5914 MIMAT0023383 Haemonchus contortus miR-5914 12 80
tur-miR-71-3p MIMAT0023041 Tetranychus urticae miR-71-3p 12 80
mmu-miR-5619-5p MIMAT0022365 Mus musculus miR-5619-5p 12 80
aca-miR-34c-3p MIMAT0021944 Anolis carolinensis miR-34c-3p 12 80
asu-miR-71-3p MIMAT0021467 Ascaris suum miR-71-3p 12 80
hsa-miR-4999-3p MIMAT0021018 Homo sapiens miR-4999-3p 12 80
hsa-miR-4704-5p MIMAT0019803 Homo sapiens miR-4704-5p 12 80
hsa-miR-4473 MIMAT0019000 Homo sapiens miR-4473 12 80
tgu-miR-34c-3p MIMAT0027033 Taeniopygia guttata miR-34c-3p 12 80
ppy-miR-34c-3p MIMAT0015743 Pongo pygmaeus miR-34c-3p 12 80
hsa-miR-3174 MIMAT0015051 Homo sapiens miR-3174 12 80
cel-miR-2953-3p MIMAT0014447 Caenorhabditis elegans miR-2953-3p 12 80
cqu-miR-71-3p MIMAT0014401 Culex quinquefasciatus miR-71-3p 12 80
aae-miR-71-3p MIMAT0014221 Aedes aegypti miR-71-3p 12 80
eca-miR-28-3p MIMAT0013093 Equus caballus miR-28-3p 12 80
eca-miR-34b-3p MIMAT0012991 Equus caballus miR-34b-3p 12 80
crm-miR-71-3p MIMAT0011619 Caenorhabditis remanei miR-71-3p 12 80
tca-miR-71-3p MIMAT0019109 Tribolium castaneum miR-71-3p 12 80
ptr-miR-34c MIMAT0008114 Pan troglodytes miR-34c 12 80
osa-miR1865-5p MIMAT0007815 Oryza sativa miR1865-5p 12 80
cfa-miR-28 MIMAT0006675 Canis familiaris miR-28 12 80
mml-miR-34c-3p MIMAT0006176 Macaca mulatta miR-34c-3p 12 80
gga-miR-1776 MIMAT0007687 Gallus gallus miR-1776 12 80
oan-miR-34a-3p MIMAT0007109 Ornithorhynchus anatinus miR-34a-3p 12 80
tae-miR1121 MIMAT0005356 Triticum aestivum miR1121 12 80
mdv2-miR-M29-3p MIMAT0012545 Mareks disease miR-M29-3p 12 80
dre-miR-34c-3p MIMAT0032011 Danio rerio miR-34c-3p 12 80
ebv-miR-BART3-5p MIMAT0003410 Epstein Barr miR-BART3-5p 12 80
mml-miR-28-3p MIMAT0026575 Macaca mulatta miR-28-3p 12 80
ssc-miR-28-3p MIMAT0015211 Sus scrofa miR-28-3p 12 80
gga-miR-34c-3p MIMAT0026541 Gallus gallus miR-34c-3p 12 80
gga-miR-34b-3p MIMAT0026540 Gallus gallus miR-34b-3p 12 80
rno-miR-34c-3p MIMAT0004723 Rattus norvegicus miR-34c-3p 12 80
rno-miR-34b-3p MIMAT0017105 Rattus norvegicus miR-34b-3p 12 80
rno-miR-28-3p MIMAT0004716 Rattus norvegicus miR-28-3p 12 80
hsa-miR-34c-3p MIMAT0004677 Homo sapiens miR-34c-3p 12 80
mmu-miR-28a-3p MIMAT0004661 Mus musculus miR-28a-3p 12 80
mmu-miR-34b-3p MIMAT0004581 Mus musculus miR-34b-3p 12 80
mmu-miR-34c-3p MIMAT0004580 Mus musculus miR-34c-3p 12 80
hsa-miR-28-3p MIMAT0004502 Homo sapiens miR-28-3p 12 80
cel-miR-71-3p MIMAT0015107 Caenorhabditis elegans miR-71-3p 12 80
>ppc-miR-8320-3p MIMAT0033181 Pristionchus pacificus miR-8320-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcactag 7
|||||||
Sbjct: 1 tcactag 7
>ppy-miR-921 MIMAT0016131 Pongo pygmaeus miR-921
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcactag 7
|||||||
Sbjct: 7 tcactag 1
>rlcv-miR-rL1-23-5p MIMAT0016945 Rhesus lymphocryptovirus
miR-rL1-23-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcactag 7
|||||||
Sbjct: 1 tcactag 7
>ebv-miR-BART21-5p MIMAT0010130 Epstein Barr miR-BART21-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcactag 7
|||||||
Sbjct: 1 tcactag 7
>hsa-miR-921 MIMAT0004971 Homo sapiens miR-921
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcactag 7
|||||||
Sbjct: 7 tcactag 1
>ssc-miR-9837-5p MIMAT0037055 Sus scrofa miR-9837-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 1 tcacta 6
>chi-miR-34c-3p MIMAT0036170 Capra hircus miR-34c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>chi-miR-34b-3p MIMAT0036168 Capra hircus miR-34b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>chi-miR-28-3p MIMAT0036110 Capra hircus miR-28-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactag 7
||||||
Sbjct: 1 cactag 6
>efu-miR-34c MIMAT0035046 Eptesicus fuscus miR-34c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>cfa-miR-8860 MIMAT0034355 Canis familiaris miR-8860
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactag 7
||||||
Sbjct: 3 cactag 8
>gra-miR8646 MIMAT0034004 Gossypium raimondii miR8646
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacta 6
||||||
Sbjct: 6 tcacta 1
>pxy-miR-7a MIMAT0033762 Plutella xylostella miR-7a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactag 7
||||||
Sbjct: 8 cactag 3
>str-miR-71-3p MIMAT0033318 Strongyloides ratti miR-71-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>ppc-miR-71b-3p MIMAT0033007 Pristionchus pacificus miR-71b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>prd-miR-71-3p MIMAT0030461 Panagrellus redivivus miR-71-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>bdi-miR7775-3p MIMAT0030301 Brachypodium distachyon miR7775-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactag 7
||||||
Sbjct: 6 cactag 1
>ipu-miR-34c MIMAT0029505 Ictalurus punctatus miR-34c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>oan-miR-34b-3p MIMAT0028989 Ornithorhynchus anatinus miR-34b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>oan-miR-7407-5p MIMAT0028960 Ornithorhynchus anatinus
miR-7407-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacta 6
||||||
Sbjct: 6 tcacta 1
>mdo-miR-7382-3p MIMAT0028821 Monodelphis domestica miR-7382-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactag 7
||||||
Sbjct: 1 cactag 6
>mdo-miR-34b-3p MIMAT0028589 Monodelphis domestica miR-34b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>mdo-miR-34c-3p MIMAT0028587 Monodelphis domestica miR-34c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>ptc-miR6472 MIMAT0025211 Populus trichocarpa miR6472
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacta 6
||||||
Sbjct: 6 tcacta 1
>hme-miR-6311-3p MIMAT0025018 Heliconius melpomene miR-6311-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacta 6
||||||
Sbjct: 6 tcacta 1
>hme-miR-71 MIMAT0024985 Heliconius melpomene miR-71
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>ppe-miR6285 MIMAT0027316 Prunus persica miR6285
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacta 6
||||||
Sbjct: 6 tcacta 1
>ppy-miR-3174 MIMAT0024407 Pongo pygmaeus miR-3174
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacta 6
||||||
Sbjct: 6 tcacta 1
>cgr-miR-34c-3p MIMAT0023930 Cricetulus griseus miR-34c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>cgr-miR-34b-3p MIMAT0023928 Cricetulus griseus miR-34b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>cgr-miR-28-3p MIMAT0023879 Cricetulus griseus miR-28-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactag 7
||||||
Sbjct: 1 cactag 6
>hsa-miR-6080 MIMAT0023705 Homo sapiens miR-6080
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactag 7
||||||
Sbjct: 7 cactag 2
>hsa-miR-6073 MIMAT0023698 Homo sapiens miR-6073
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacta 6
||||||
Sbjct: 8 tcacta 3
>hco-miR-5914 MIMAT0023383 Haemonchus contortus miR-5914
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacta 6
||||||
Sbjct: 6 tcacta 1
>tur-miR-71-3p MIMAT0023041 Tetranychus urticae miR-71-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>mmu-miR-5619-5p MIMAT0022365 Mus musculus miR-5619-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>aca-miR-34c-3p MIMAT0021944 Anolis carolinensis miR-34c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>asu-miR-71-3p MIMAT0021467 Ascaris suum miR-71-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>hsa-miR-4999-3p MIMAT0021018 Homo sapiens miR-4999-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 1 tcacta 6
>hsa-miR-4704-5p MIMAT0019803 Homo sapiens miR-4704-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactag 7
||||||
Sbjct: 3 cactag 8
>hsa-miR-4473 MIMAT0019000 Homo sapiens miR-4473
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactag 7
||||||
Sbjct: 6 cactag 1
>tgu-miR-34c-3p MIMAT0027033 Taeniopygia guttata miR-34c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>ppy-miR-34c-3p MIMAT0015743 Pongo pygmaeus miR-34c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>hsa-miR-3174 MIMAT0015051 Homo sapiens miR-3174
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacta 6
||||||
Sbjct: 6 tcacta 1
>cel-miR-2953-3p MIMAT0014447 Caenorhabditis elegans miR-2953-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>cqu-miR-71-3p MIMAT0014401 Culex quinquefasciatus miR-71-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>aae-miR-71-3p MIMAT0014221 Aedes aegypti miR-71-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>eca-miR-28-3p MIMAT0013093 Equus caballus miR-28-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactag 7
||||||
Sbjct: 1 cactag 6
>eca-miR-34b-3p MIMAT0012991 Equus caballus miR-34b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>crm-miR-71-3p MIMAT0011619 Caenorhabditis remanei miR-71-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>tca-miR-71-3p MIMAT0019109 Tribolium castaneum miR-71-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>ptr-miR-34c MIMAT0008114 Pan troglodytes miR-34c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>osa-miR1865-5p MIMAT0007815 Oryza sativa miR1865-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactag 7
||||||
Sbjct: 8 cactag 3
>cfa-miR-28 MIMAT0006675 Canis familiaris miR-28
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactag 7
||||||
Sbjct: 1 cactag 6
>mml-miR-34c-3p MIMAT0006176 Macaca mulatta miR-34c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>gga-miR-1776 MIMAT0007687 Gallus gallus miR-1776
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacta 6
||||||
Sbjct: 8 tcacta 3
>oan-miR-34a-3p MIMAT0007109 Ornithorhynchus anatinus miR-34a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>tae-miR1121 MIMAT0005356 Triticum aestivum miR1121
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacta 6
||||||
Sbjct: 8 tcacta 3
>mdv2-miR-M29-3p MIMAT0012545 Mareks disease miR-M29-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcacta 6
||||||
Sbjct: 8 tcacta 3
>dre-miR-34c-3p MIMAT0032011 Danio rerio miR-34c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>ebv-miR-BART3-5p MIMAT0003410 Epstein Barr miR-BART3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactag 7
||||||
Sbjct: 8 cactag 3
>mml-miR-28-3p MIMAT0026575 Macaca mulatta miR-28-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactag 7
||||||
Sbjct: 1 cactag 6
>ssc-miR-28-3p MIMAT0015211 Sus scrofa miR-28-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactag 7
||||||
Sbjct: 1 cactag 6
>gga-miR-34c-3p MIMAT0026541 Gallus gallus miR-34c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>gga-miR-34b-3p MIMAT0026540 Gallus gallus miR-34b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>rno-miR-34c-3p MIMAT0004723 Rattus norvegicus miR-34c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>rno-miR-34b-3p MIMAT0017105 Rattus norvegicus miR-34b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>rno-miR-28-3p MIMAT0004716 Rattus norvegicus miR-28-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactag 7
||||||
Sbjct: 1 cactag 6
>hsa-miR-34c-3p MIMAT0004677 Homo sapiens miR-34c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>mmu-miR-28a-3p MIMAT0004661 Mus musculus miR-28a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactag 7
||||||
Sbjct: 1 cactag 6
>mmu-miR-34b-3p MIMAT0004581 Mus musculus miR-34b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>mmu-miR-34c-3p MIMAT0004580 Mus musculus miR-34c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
>hsa-miR-28-3p MIMAT0004502 Homo sapiens miR-28-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactag 7
||||||
Sbjct: 1 cactag 6
>cel-miR-71-3p MIMAT0015107 Caenorhabditis elegans miR-71-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcacta 6
||||||
Sbjct: 3 tcacta 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 88
Number of extensions: 83
Number of successful extensions: 74
Number of sequences better than 100.0: 74
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 74
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
