BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart21-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-23-5p MIMAT0016945 Rhesus lymphocryptovirus miR-rL1... 16 6.9
ebv-miR-BART21-5p MIMAT0010130 Epstein Barr miR-BART21-5p 16 6.9
pxy-miR-7a MIMAT0033762 Plutella xylostella miR-7a 14 27
ppc-miR-8320-3p MIMAT0033181 Pristionchus pacificus miR-8320-3p 14 27
stu-miR7987 MIMAT0030860 Solanum tuberosum miR7987 14 27
ppy-miR-921 MIMAT0016131 Pongo pygmaeus miR-921 14 27
hsa-miR-921 MIMAT0004971 Homo sapiens miR-921 14 27
>rlcv-miR-rL1-23-5p MIMAT0016945 Rhesus lymphocryptovirus
miR-rL1-23-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcactagt 8
||||||||
Sbjct: 1 tcactagt 8
>ebv-miR-BART21-5p MIMAT0010130 Epstein Barr miR-BART21-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcactagt 8
||||||||
Sbjct: 1 tcactagt 8
>pxy-miR-7a MIMAT0033762 Plutella xylostella miR-7a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cactagt 8
|||||||
Sbjct: 8 cactagt 2
>ppc-miR-8320-3p MIMAT0033181 Pristionchus pacificus miR-8320-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcactag 7
|||||||
Sbjct: 1 tcactag 7
>stu-miR7987 MIMAT0030860 Solanum tuberosum miR7987
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cactagt 8
|||||||
Sbjct: 2 cactagt 8
>ppy-miR-921 MIMAT0016131 Pongo pygmaeus miR-921
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcactag 7
|||||||
Sbjct: 7 tcactag 1
>hsa-miR-921 MIMAT0004971 Homo sapiens miR-921
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcactag 7
|||||||
Sbjct: 7 tcactag 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 104
Number of extensions: 95
Number of successful extensions: 79
Number of sequences better than 100.0: 7
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 7
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
