BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart11-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ebv-miR-BART11-5p MIMAT0003421 Epstein Barr miR-BART11-5p 16 6.9
oha-miR-3120 MIMAT0036830 Ophiophagus hannah miR-3120 14 27
ppc-miR-8359-3p MIMAT0033281 Pristionchus pacificus miR-8359-3p 14 27
ppc-miR-8272-5p MIMAT0033041 Pristionchus pacificus miR-8272-5p 14 27
ppc-miR-8218a-3p MIMAT0032867 Pristionchus pacificus miR-8218a-3p 14 27
cin-miR-4130-3p MIMAT0016725 Ciona intestinalis miR-4130-3p 14 27
hsa-miR-3120-5p MIMAT0019198 Homo sapiens miR-3120-5p 14 27
nve-miR-2047-3p MIMAT0009819 Nematostella vectensis miR-2047-3p 14 27
ptr-miR-1324 MIMAT0008029 Pan troglodytes miR-1324 14 27
gga-miR-1664-5p MIMAT0007546 Gallus gallus miR-1664-5p 14 27
hsa-miR-1324 MIMAT0005956 Homo sapiens miR-1324 14 27
mmu-miR-717 MIMAT0003510 Mus musculus miR-717 14 27
>ebv-miR-BART11-5p MIMAT0003421 Epstein Barr miR-BART11-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcagacag 8
||||||||
Sbjct: 1 tcagacag 8
>oha-miR-3120 MIMAT0036830 Ophiophagus hannah miR-3120
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagacag 8
|||||||
Sbjct: 8 cagacag 2
>ppc-miR-8359-3p MIMAT0033281 Pristionchus pacificus miR-8359-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagaca 7
|||||||
Sbjct: 2 tcagaca 8
>ppc-miR-8272-5p MIMAT0033041 Pristionchus pacificus miR-8272-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagaca 7
|||||||
Sbjct: 7 tcagaca 1
>ppc-miR-8218a-3p MIMAT0032867 Pristionchus pacificus
miR-8218a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagaca 7
|||||||
Sbjct: 1 tcagaca 7
>cin-miR-4130-3p MIMAT0016725 Ciona intestinalis miR-4130-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagacag 8
|||||||
Sbjct: 1 cagacag 7
>hsa-miR-3120-5p MIMAT0019198 Homo sapiens miR-3120-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagacag 8
|||||||
Sbjct: 8 cagacag 2
>nve-miR-2047-3p MIMAT0009819 Nematostella vectensis miR-2047-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagaca 7
|||||||
Sbjct: 1 tcagaca 7
>ptr-miR-1324 MIMAT0008029 Pan troglodytes miR-1324
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagacag 8
|||||||
Sbjct: 2 cagacag 8
>gga-miR-1664-5p MIMAT0007546 Gallus gallus miR-1664-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagacag 8
|||||||
Sbjct: 2 cagacag 8
>hsa-miR-1324 MIMAT0005956 Homo sapiens miR-1324
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagacag 8
|||||||
Sbjct: 2 cagacag 8
>mmu-miR-717 MIMAT0003510 Mus musculus miR-717
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagaca 7
|||||||
Sbjct: 2 tcagaca 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 119
Number of extensions: 106
Number of successful extensions: 85
Number of sequences better than 100.0: 12
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
