BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h5-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdo-miR-7326-5p MIMAT0028654 Monodelphis domestica miR-7326-5p 14 20
mml-miR-7205-3p MIMAT0028377 Macaca mulatta miR-7205-3p 14 20
ssc-miR-7135-5p MIMAT0028145 Sus scrofa miR-7135-5p 14 20
mmu-miR-6952-3p MIMAT0027805 Mus musculus miR-6952-3p 14 20
hsa-miR-4653-5p MIMAT0019718 Homo sapiens miR-4653-5p 14 20
hsa-miR-3921 MIMAT0018196 Homo sapiens miR-3921 14 20
bmo-miR-3239 MIMAT0015422 Bombyx mori miR-3239 14 20
hsv1-miR-H5-3p MIMAT0008403 Herpes Simplex miR-H5-3p 14 20
mmu-miR-1896 MIMAT0007873 Mus musculus miR-1896 14 20
gga-miR-1756b MIMAT0007712 Gallus gallus miR-1756b 14 20
ssc-miR-9842-5p MIMAT0037060 Sus scrofa miR-9842-5p 12 80
ggo-miR-518c-5p MIMAT0036421 Gorilla gorilla miR-518c-5p 12 80
chi-miR-330-5p MIMAT0036143 Capra hircus miR-330-5p 12 80
bdi-miR845 MIMAT0035529 Brachypodium distachyon miR845 12 80
efu-miR-9220 MIMAT0034812 Eptesicus fuscus miR-9220 12 80
ssa-miR-301d-5p MIMAT0032598 Salmo salar miR-301d-5p 12 80
bdi-miR7783-3p MIMAT0030321 Brachypodium distachyon miR7783-3p 12 80
mmu-miR-7668-5p MIMAT0029842 Mus musculus miR-7668-5p 12 80
ipu-miR-7563c MIMAT0029562 Ictalurus punctatus miR-7563c 12 80
oan-miR-7407-3p MIMAT0028961 Ornithorhynchus anatinus miR-7407-3p 12 80
oan-miR-7403-5p MIMAT0028948 Ornithorhynchus anatinus miR-7403-5p 12 80
oan-miR-7400-3p MIMAT0028943 Ornithorhynchus anatinus miR-7400-3p 12 80
mmu-miR-7215-3p MIMAT0028399 Mus musculus miR-7215-3p 12 80
cme-miR1863 MIMAT0026101 Cucumis melo miR1863 12 80
mmu-miR-7090-5p MIMAT0028086 Mus musculus miR-7090-5p 12 80
mmu-miR-7084-3p MIMAT0028075 Mus musculus miR-7084-3p 12 80
mmu-miR-7064-5p MIMAT0028032 Mus musculus miR-7064-5p 12 80
mmu-miR-7021-3p MIMAT0027947 Mus musculus miR-7021-3p 12 80
hsa-miR-6824-3p MIMAT0027549 Homo sapiens miR-6824-3p 12 80
hsa-miR-6817-3p MIMAT0027535 Homo sapiens miR-6817-3p 12 80
hsa-miR-6764-3p MIMAT0027429 Homo sapiens miR-6764-3p 12 80
hsa-miR-6728-3p MIMAT0027358 Homo sapiens miR-6728-3p 12 80
gga-miR-6683-3p MIMAT0025788 Gallus gallus miR-6683-3p 12 80
gga-miR-6675-3p MIMAT0025778 Gallus gallus miR-6675-3p 12 80
pde-miR1311 MIMAT0025348 Pinus densata miR1311 12 80
ptc-miR6470 MIMAT0025209 Populus trichocarpa miR6470 12 80
dme-miR-4963-3p MIMAT0020186 Drosophila melanogaster miR-4963-3p 12 80
hsa-miR-4714-5p MIMAT0019822 Homo sapiens miR-4714-5p 12 80
pma-miR-4560 MIMAT0019592 Petromyzon marinus miR-4560 12 80
pma-miR-222-5p MIMAT0019533 Petromyzon marinus miR-222-5p 12 80
gma-miR4340 MIMAT0018228 Glycine max miR4340 12 80
tca-miR-3834-3p MIMAT0018701 Tribolium castaneum miR-3834-3p 12 80
pab-miR1863 MIMAT0018163 Picea abies miR1863 12 80
pab-miR1311 MIMAT0018162 Picea abies miR1311 12 80
sja-miR-3486-5p MIMAT0016292 Schistosoma japonicum miR-3486-5p 12 80
ppy-miR-593 MIMAT0016036 Pongo pygmaeus miR-593 12 80
ppy-miR-330-5p MIMAT0015833 Pongo pygmaeus miR-330-5p 12 80
ath-miR3434-3p MIMAT0017738 Arabidopsis thaliana miR3434-3p 12 80
hsa-miR-3192-3p MIMAT0027027 Homo sapiens miR-3192-3p 12 80
hsa-miR-3123 MIMAT0014985 Homo sapiens miR-3123 12 80
osa-miR1863b MIMAT0013836 Oryza sativa miR1863b 12 80
eca-miR-330 MIMAT0013012 Equus caballus miR-330 12 80
bta-miR-2364 MIMAT0011902 Bos taurus miR-2364 12 80
dre-miR-2196 MIMAT0011304 Danio rerio miR-2196 12 80
osa-miR2090 MIMAT0010045 Oryza sativa miR2090 12 80
cfa-miR-330 MIMAT0009893 Canis familiaris miR-330 12 80
pta-miR1311 MIMAT0009128 Pinus taeda miR1311 12 80
ptr-miR-593 MIMAT0008264 Pan troglodytes miR-593 12 80
osa-miR1863a MIMAT0007813 Oryza sativa miR1863a 12 80
cfa-miR-1837 MIMAT0006630 Canis familiaris miR-1837 12 80
mml-miR-942-5p MIMAT0006542 Macaca mulatta miR-942-5p 12 80
mml-miR-593 MIMAT0006453 Macaca mulatta miR-593 12 80
mml-miR-330-5p MIMAT0006270 Macaca mulatta miR-330-5p 12 80
gga-miR-1783 MIMAT0007695 Gallus gallus miR-1783 12 80
gga-miR-1757 MIMAT0007664 Gallus gallus miR-1757 12 80
gga-miR-1700 MIMAT0007592 Gallus gallus miR-1700 12 80
gga-miR-1689-5p MIMAT0007579 Gallus gallus miR-1689-5p 12 80
gga-miR-1650 MIMAT0007528 Gallus gallus miR-1650 12 80
gga-miR-1647 MIMAT0007523 Gallus gallus miR-1647 12 80
mdo-miR-1547-5p MIMAT0006147 Monodelphis domestica miR-1547-5p 12 80
hiv1-miR-TAR-3p MIMAT0006017 Human immunodeficiency miR-TAR-3p 12 80
hiv1-miR-TAR-5p MIMAT0006016 Human immunodeficiency miR-TAR-5p 12 80
gga-miR-1465 MIMAT0007343 Gallus gallus miR-1465 12 80
mmu-miR-881-5p MIMAT0004845 Mus musculus miR-881-5p 12 80
ath-miR859 MIMAT0004303 Arabidopsis thaliana miR859 12 80
ath-miR829-3p.1 MIMAT0004245 Arabidopsis thaliana miR829-3p.1 12 80
hsa-miR-593-3p MIMAT0004802 Homo sapiens miR-593-3p 12 80
hsa-miR-518c-5p MIMAT0002847 Homo sapiens miR-518c-5p 12 80
hsa-miR-330-5p MIMAT0004693 Homo sapiens miR-330-5p 12 80
mmu-miR-330-5p MIMAT0004642 Mus musculus miR-330-5p 12 80
rno-miR-330-5p MIMAT0004641 Rattus norvegicus miR-330-5p 12 80
>mdo-miR-7326-5p MIMAT0028654 Monodelphis domestica miR-7326-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagaga 7
|||||||
Sbjct: 1 tcagaga 7
>mml-miR-7205-3p MIMAT0028377 Macaca mulatta miR-7205-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagaga 7
|||||||
Sbjct: 7 tcagaga 1
>ssc-miR-7135-5p MIMAT0028145 Sus scrofa miR-7135-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagaga 7
|||||||
Sbjct: 7 tcagaga 1
>mmu-miR-6952-3p MIMAT0027805 Mus musculus miR-6952-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagaga 7
|||||||
Sbjct: 7 tcagaga 1
>hsa-miR-4653-5p MIMAT0019718 Homo sapiens miR-4653-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagaga 7
|||||||
Sbjct: 7 tcagaga 1
>hsa-miR-3921 MIMAT0018196 Homo sapiens miR-3921
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagaga 7
|||||||
Sbjct: 7 tcagaga 1
>bmo-miR-3239 MIMAT0015422 Bombyx mori miR-3239
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagaga 7
|||||||
Sbjct: 1 tcagaga 7
>hsv1-miR-H5-3p MIMAT0008403 Herpes Simplex miR-H5-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagaga 7
|||||||
Sbjct: 2 tcagaga 8
>mmu-miR-1896 MIMAT0007873 Mus musculus miR-1896
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagaga 7
|||||||
Sbjct: 8 tcagaga 2
>gga-miR-1756b MIMAT0007712 Gallus gallus miR-1756b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagaga 7
|||||||
Sbjct: 8 tcagaga 2
>ssc-miR-9842-5p MIMAT0037060 Sus scrofa miR-9842-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>ggo-miR-518c-5p MIMAT0036421 Gorilla gorilla miR-518c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>chi-miR-330-5p MIMAT0036143 Capra hircus miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>bdi-miR845 MIMAT0035529 Brachypodium distachyon miR845
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>efu-miR-9220 MIMAT0034812 Eptesicus fuscus miR-9220
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>ssa-miR-301d-5p MIMAT0032598 Salmo salar miR-301d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 6 tcagag 1
>bdi-miR7783-3p MIMAT0030321 Brachypodium distachyon miR7783-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>mmu-miR-7668-5p MIMAT0029842 Mus musculus miR-7668-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>ipu-miR-7563c MIMAT0029562 Ictalurus punctatus miR-7563c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>oan-miR-7407-3p MIMAT0028961 Ornithorhynchus anatinus
miR-7407-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 8 cagaga 3
>oan-miR-7403-5p MIMAT0028948 Ornithorhynchus anatinus
miR-7403-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 1 tcagag 6
>oan-miR-7400-3p MIMAT0028943 Ornithorhynchus anatinus
miR-7400-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 6 tcagag 1
>mmu-miR-7215-3p MIMAT0028399 Mus musculus miR-7215-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>cme-miR1863 MIMAT0026101 Cucumis melo miR1863
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>mmu-miR-7090-5p MIMAT0028086 Mus musculus miR-7090-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>mmu-miR-7084-3p MIMAT0028075 Mus musculus miR-7084-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>mmu-miR-7064-5p MIMAT0028032 Mus musculus miR-7064-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 1 tcagag 6
>mmu-miR-7021-3p MIMAT0027947 Mus musculus miR-7021-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>hsa-miR-6824-3p MIMAT0027549 Homo sapiens miR-6824-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>hsa-miR-6817-3p MIMAT0027535 Homo sapiens miR-6817-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 8 cagaga 3
>hsa-miR-6764-3p MIMAT0027429 Homo sapiens miR-6764-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>hsa-miR-6728-3p MIMAT0027358 Homo sapiens miR-6728-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>gga-miR-6683-3p MIMAT0025788 Gallus gallus miR-6683-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 1 tcagag 6
>gga-miR-6675-3p MIMAT0025778 Gallus gallus miR-6675-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>pde-miR1311 MIMAT0025348 Pinus densata miR1311
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 1 tcagag 6
>ptc-miR6470 MIMAT0025209 Populus trichocarpa miR6470
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 6 tcagag 1
>dme-miR-4963-3p MIMAT0020186 Drosophila melanogaster
miR-4963-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 8 cagaga 3
>hsa-miR-4714-5p MIMAT0019822 Homo sapiens miR-4714-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>pma-miR-4560 MIMAT0019592 Petromyzon marinus miR-4560
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>pma-miR-222-5p MIMAT0019533 Petromyzon marinus miR-222-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>gma-miR4340 MIMAT0018228 Glycine max miR4340
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagaga 7
||||||
Sbjct: 3 cagaga 8
>tca-miR-3834-3p MIMAT0018701 Tribolium castaneum miR-3834-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>pab-miR1863 MIMAT0018163 Picea abies miR1863
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>pab-miR1311 MIMAT0018162 Picea abies miR1311
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 1 tcagag 6
>sja-miR-3486-5p MIMAT0016292 Schistosoma japonicum miR-3486-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>ppy-miR-593 MIMAT0016036 Pongo pygmaeus miR-593
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 8 cagaga 3
>ppy-miR-330-5p MIMAT0015833 Pongo pygmaeus miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>ath-miR3434-3p MIMAT0017738 Arabidopsis thaliana miR3434-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 1 tcagag 6
>hsa-miR-3192-3p MIMAT0027027 Homo sapiens miR-3192-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 6 tcagag 1
>hsa-miR-3123 MIMAT0014985 Homo sapiens miR-3123
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagaga 7
||||||
Sbjct: 1 cagaga 6
>osa-miR1863b MIMAT0013836 Oryza sativa miR1863b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>eca-miR-330 MIMAT0013012 Equus caballus miR-330
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>bta-miR-2364 MIMAT0011902 Bos taurus miR-2364
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>dre-miR-2196 MIMAT0011304 Danio rerio miR-2196
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 8 cagaga 3
>osa-miR2090 MIMAT0010045 Oryza sativa miR2090
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>cfa-miR-330 MIMAT0009893 Canis familiaris miR-330
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>pta-miR1311 MIMAT0009128 Pinus taeda miR1311
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 1 tcagag 6
>ptr-miR-593 MIMAT0008264 Pan troglodytes miR-593
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 8 cagaga 3
>osa-miR1863a MIMAT0007813 Oryza sativa miR1863a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>cfa-miR-1837 MIMAT0006630 Canis familiaris miR-1837
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>mml-miR-942-5p MIMAT0006542 Macaca mulatta miR-942-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 8 cagaga 3
>mml-miR-593 MIMAT0006453 Macaca mulatta miR-593
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 8 cagaga 3
>mml-miR-330-5p MIMAT0006270 Macaca mulatta miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>gga-miR-1783 MIMAT0007695 Gallus gallus miR-1783
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>gga-miR-1757 MIMAT0007664 Gallus gallus miR-1757
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 1 tcagag 6
>gga-miR-1700 MIMAT0007592 Gallus gallus miR-1700
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>gga-miR-1689-5p MIMAT0007579 Gallus gallus miR-1689-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>gga-miR-1650 MIMAT0007528 Gallus gallus miR-1650
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>gga-miR-1647 MIMAT0007523 Gallus gallus miR-1647
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>mdo-miR-1547-5p MIMAT0006147 Monodelphis domestica miR-1547-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>hiv1-miR-TAR-3p MIMAT0006017 Human immunodeficiency miR-TAR-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>hiv1-miR-TAR-5p MIMAT0006016 Human immunodeficiency miR-TAR-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 8 cagaga 3
>gga-miR-1465 MIMAT0007343 Gallus gallus miR-1465
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>mmu-miR-881-5p MIMAT0004845 Mus musculus miR-881-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagaga 7
||||||
Sbjct: 1 cagaga 6
>ath-miR859 MIMAT0004303 Arabidopsis thaliana miR859
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 8 cagaga 3
>ath-miR829-3p.1 MIMAT0004245 Arabidopsis thaliana miR829-3p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>hsa-miR-593-3p MIMAT0004802 Homo sapiens miR-593-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 8 cagaga 3
>hsa-miR-518c-5p MIMAT0002847 Homo sapiens miR-518c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>hsa-miR-330-5p MIMAT0004693 Homo sapiens miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>mmu-miR-330-5p MIMAT0004642 Mus musculus miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
>rno-miR-330-5p MIMAT0004641 Rattus norvegicus miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagaga 7
||||||
Sbjct: 6 cagaga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 122
Number of extensions: 112
Number of successful extensions: 81
Number of sequences better than 100.0: 81
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 81
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)