BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d6-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8329-5p MIMAT0033202 Pristionchus pacificus miR-8329-5p 14 20
mmu-miR-7668-5p MIMAT0029842 Mus musculus miR-7668-5p 14 20
dev-miR-D6-3p MIMAT0028176 Duck enteritis miR-D6-3p 14 20
pde-miR1311 MIMAT0025348 Pinus densata miR1311 14 20
hsa-miR-4714-5p MIMAT0019822 Homo sapiens miR-4714-5p 14 20
pab-miR1311 MIMAT0018162 Picea abies miR1311 14 20
ath-miR3434-3p MIMAT0017738 Arabidopsis thaliana miR3434-3p 14 20
aly-miR3442-3p MIMAT0017718 Arabidopsis lyrata miR3442-3p 14 20
osa-miR2090 MIMAT0010045 Oryza sativa miR2090 14 20
pta-miR1311 MIMAT0009128 Pinus taeda miR1311 14 20
ssc-miR-9842-5p MIMAT0037060 Sus scrofa miR-9842-5p 12 80
bdi-miR845 MIMAT0035529 Brachypodium distachyon miR845 12 80
efu-miR-9255 MIMAT0034873 Eptesicus fuscus miR-9255 12 80
eca-miR-9062 MIMAT0034607 Equus caballus miR-9062 12 80
pxy-miR-283 MIMAT0033786 Plutella xylostella miR-283 12 80
cel-miR-2217b-5p MIMAT0032841 Caenorhabditis elegans miR-2217b-5p 12 80
ssa-miR-8157-3p MIMAT0032737 Salmo salar miR-8157-3p 12 80
ssa-miR-301d-5p MIMAT0032598 Salmo salar miR-301d-5p 12 80
mmu-miR-8106 MIMAT0031411 Mus musculus miR-8106 12 80
prd-miR-240-5p MIMAT0030592 Panagrellus redivivus miR-240-5p 12 80
prd-miR-7888-3p MIMAT0030549 Panagrellus redivivus miR-7888-3p 12 80
bdi-miR7783-3p MIMAT0030321 Brachypodium distachyon miR7783-3p 12 80
bta-miR-6529b MIMAT0029947 Bos taurus miR-6529b 12 80
ipu-miR-7563c MIMAT0029562 Ictalurus punctatus miR-7563c 12 80
oan-miR-7403-5p MIMAT0028948 Ornithorhynchus anatinus miR-7403-5p 12 80
oan-miR-7400-3p MIMAT0028943 Ornithorhynchus anatinus miR-7400-3p 12 80
mdo-miR-7386d-5p MIMAT0028850 Monodelphis domestica miR-7386d-5p 12 80
mdo-miR-7326-5p MIMAT0028654 Monodelphis domestica miR-7326-5p 12 80
mmu-miR-7215-3p MIMAT0028399 Mus musculus miR-7215-3p 12 80
cme-miR1863 MIMAT0026101 Cucumis melo miR1863 12 80
mmu-miR-7094-3p MIMAT0028095 Mus musculus miR-7094-3p 12 80
mmu-miR-7090-5p MIMAT0028086 Mus musculus miR-7090-5p 12 80
mmu-miR-7084-3p MIMAT0028075 Mus musculus miR-7084-3p 12 80
mmu-miR-7064-5p MIMAT0028032 Mus musculus miR-7064-5p 12 80
gga-miR-6683-3p MIMAT0025788 Gallus gallus miR-6683-3p 12 80
bta-miR-6524 MIMAT0025553 Bos taurus miR-6524 12 80
ptc-miR6470 MIMAT0025209 Populus trichocarpa miR6470 12 80
hsa-miR-5586-3p MIMAT0022288 Homo sapiens miR-5586-3p 12 80
mtr-miR5213-3p MIMAT0021147 Medicago truncatula miR5213-3p 12 80
hsa-miR-4797-5p MIMAT0019972 Homo sapiens miR-4797-5p 12 80
pma-miR-222-5p MIMAT0019533 Petromyzon marinus miR-222-5p 12 80
hsa-miR-4522 MIMAT0019060 Homo sapiens miR-4522 12 80
tca-miR-3829-5p MIMAT0018688 Tribolium castaneum miR-3829-5p 12 80
pab-miR1863 MIMAT0018163 Picea abies miR1863 12 80
mmu-miR-3470b MIMAT0015641 Mus musculus miR-3470b 12 80
aly-miR402-3p MIMAT0017682 Arabidopsis lyrata miR402-3p 12 80
bmo-miR-3239 MIMAT0015422 Bombyx mori miR-3239 12 80
bmo-miR-3217 MIMAT0015397 Bombyx mori miR-3217 12 80
hsa-miR-3192-3p MIMAT0027027 Homo sapiens miR-3192-3p 12 80
mmu-miR-3082-5p MIMAT0014872 Mus musculus miR-3082-5p 12 80
osa-miR1863b MIMAT0013836 Oryza sativa miR1863b 12 80
bmo-miR-2778b-3p MIMAT0013676 Bombyx mori miR-2778b-3p 12 80
bmo-miR-2778d-3p MIMAT0013674 Bombyx mori miR-2778d-3p 12 80
bmo-miR-2778c-3p MIMAT0013667 Bombyx mori miR-2778c-3p 12 80
bmo-miR-2778a-3p MIMAT0013665 Bombyx mori miR-2778a-3p 12 80
bta-miR-2461-5p MIMAT0012047 Bos taurus miR-2461-5p 12 80
bta-miR-2319b MIMAT0011843 Bos taurus miR-2319b 12 80
bta-miR-2319a MIMAT0011842 Bos taurus miR-2319a 12 80
cel-miR-2217a-5p MIMAT0011451 Caenorhabditis elegans miR-2217a-5p 12 80
mmu-miR-1896 MIMAT0007873 Mus musculus miR-1896 12 80
osa-miR1863a MIMAT0007813 Oryza sativa miR1863a 12 80
cfa-miR-1837 MIMAT0006630 Canis familiaris miR-1837 12 80
gga-miR-1756b MIMAT0007712 Gallus gallus miR-1756b 12 80
gga-miR-1783 MIMAT0007695 Gallus gallus miR-1783 12 80
gga-miR-1757 MIMAT0007664 Gallus gallus miR-1757 12 80
gga-miR-1700 MIMAT0007592 Gallus gallus miR-1700 12 80
gga-miR-1650 MIMAT0007528 Gallus gallus miR-1650 12 80
mdo-miR-1547-5p MIMAT0006147 Monodelphis domestica miR-1547-5p 12 80
gga-miR-1465 MIMAT0007343 Gallus gallus miR-1465 12 80
mml-miR-514a-5p MIMAT0026748 Macaca mulatta miR-514a-5p 12 80
ath-miR829-3p.1 MIMAT0004245 Arabidopsis thaliana miR829-3p.1 12 80
hsa-miR-514a-5p MIMAT0022702 Homo sapiens miR-514a-5p 12 80
>ppc-miR-8329-5p MIMAT0033202 Pristionchus pacificus miR-8329-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagagt 7
|||||||
Sbjct: 7 tcagagt 1
>mmu-miR-7668-5p MIMAT0029842 Mus musculus miR-7668-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagagt 7
|||||||
Sbjct: 8 tcagagt 2
>dev-miR-D6-3p MIMAT0028176 Duck enteritis miR-D6-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagagt 7
|||||||
Sbjct: 2 tcagagt 8
>pde-miR1311 MIMAT0025348 Pinus densata miR1311
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagagt 7
|||||||
Sbjct: 1 tcagagt 7
>hsa-miR-4714-5p MIMAT0019822 Homo sapiens miR-4714-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagagt 7
|||||||
Sbjct: 8 tcagagt 2
>pab-miR1311 MIMAT0018162 Picea abies miR1311
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagagt 7
|||||||
Sbjct: 1 tcagagt 7
>ath-miR3434-3p MIMAT0017738 Arabidopsis thaliana miR3434-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagagt 7
|||||||
Sbjct: 1 tcagagt 7
>aly-miR3442-3p MIMAT0017718 Arabidopsis lyrata miR3442-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagagt 7
|||||||
Sbjct: 2 tcagagt 8
>osa-miR2090 MIMAT0010045 Oryza sativa miR2090
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagagt 7
|||||||
Sbjct: 8 tcagagt 2
>pta-miR1311 MIMAT0009128 Pinus taeda miR1311
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagagt 7
|||||||
Sbjct: 1 tcagagt 7
>ssc-miR-9842-5p MIMAT0037060 Sus scrofa miR-9842-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>bdi-miR845 MIMAT0035529 Brachypodium distachyon miR845
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>efu-miR-9255 MIMAT0034873 Eptesicus fuscus miR-9255
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagagt 7
||||||
Sbjct: 8 cagagt 3
>eca-miR-9062 MIMAT0034607 Equus caballus miR-9062
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 1 cagagt 6
>pxy-miR-283 MIMAT0033786 Plutella xylostella miR-283
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 1 cagagt 6
>cel-miR-2217b-5p MIMAT0032841 Caenorhabditis elegans
miR-2217b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 1 cagagt 6
>ssa-miR-8157-3p MIMAT0032737 Salmo salar miR-8157-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagagt 7
||||||
Sbjct: 6 cagagt 1
>ssa-miR-301d-5p MIMAT0032598 Salmo salar miR-301d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 6 tcagag 1
>mmu-miR-8106 MIMAT0031411 Mus musculus miR-8106
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagagt 7
||||||
Sbjct: 8 cagagt 3
>prd-miR-240-5p MIMAT0030592 Panagrellus redivivus miR-240-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 3 cagagt 8
>prd-miR-7888-3p MIMAT0030549 Panagrellus redivivus miR-7888-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagagt 7
||||||
Sbjct: 8 cagagt 3
>bdi-miR7783-3p MIMAT0030321 Brachypodium distachyon miR7783-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>bta-miR-6529b MIMAT0029947 Bos taurus miR-6529b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagagt 7
||||||
Sbjct: 6 cagagt 1
>ipu-miR-7563c MIMAT0029562 Ictalurus punctatus miR-7563c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>oan-miR-7403-5p MIMAT0028948 Ornithorhynchus anatinus
miR-7403-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 1 tcagag 6
>oan-miR-7400-3p MIMAT0028943 Ornithorhynchus anatinus
miR-7400-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 6 tcagag 1
>mdo-miR-7386d-5p MIMAT0028850 Monodelphis domestica
miR-7386d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagagt 7
||||||
Sbjct: 6 cagagt 1
>mdo-miR-7326-5p MIMAT0028654 Monodelphis domestica miR-7326-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 1 tcagag 6
>mmu-miR-7215-3p MIMAT0028399 Mus musculus miR-7215-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>cme-miR1863 MIMAT0026101 Cucumis melo miR1863
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>mmu-miR-7094-3p MIMAT0028095 Mus musculus miR-7094-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagagt 7
||||||
Sbjct: 7 cagagt 2
>mmu-miR-7090-5p MIMAT0028086 Mus musculus miR-7090-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>mmu-miR-7084-3p MIMAT0028075 Mus musculus miR-7084-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>mmu-miR-7064-5p MIMAT0028032 Mus musculus miR-7064-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 1 tcagag 6
>gga-miR-6683-3p MIMAT0025788 Gallus gallus miR-6683-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 1 tcagag 6
>bta-miR-6524 MIMAT0025553 Bos taurus miR-6524
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagagt 7
||||||
Sbjct: 8 cagagt 3
>ptc-miR6470 MIMAT0025209 Populus trichocarpa miR6470
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 6 tcagag 1
>hsa-miR-5586-3p MIMAT0022288 Homo sapiens miR-5586-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 1 cagagt 6
>mtr-miR5213-3p MIMAT0021147 Medicago truncatula miR5213-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 1 cagagt 6
>hsa-miR-4797-5p MIMAT0019972 Homo sapiens miR-4797-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 3 cagagt 8
>pma-miR-222-5p MIMAT0019533 Petromyzon marinus miR-222-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>hsa-miR-4522 MIMAT0019060 Homo sapiens miR-4522
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagagt 7
||||||
Sbjct: 8 cagagt 3
>tca-miR-3829-5p MIMAT0018688 Tribolium castaneum miR-3829-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 1 cagagt 6
>pab-miR1863 MIMAT0018163 Picea abies miR1863
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>mmu-miR-3470b MIMAT0015641 Mus musculus miR-3470b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagagt 7
||||||
Sbjct: 8 cagagt 3
>aly-miR402-3p MIMAT0017682 Arabidopsis lyrata miR402-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 2 cagagt 7
>bmo-miR-3239 MIMAT0015422 Bombyx mori miR-3239
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 1 tcagag 6
>bmo-miR-3217 MIMAT0015397 Bombyx mori miR-3217
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 1 cagagt 6
>hsa-miR-3192-3p MIMAT0027027 Homo sapiens miR-3192-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 6 tcagag 1
>mmu-miR-3082-5p MIMAT0014872 Mus musculus miR-3082-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 3 cagagt 8
>osa-miR1863b MIMAT0013836 Oryza sativa miR1863b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>bmo-miR-2778b-3p MIMAT0013676 Bombyx mori miR-2778b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 1 cagagt 6
>bmo-miR-2778d-3p MIMAT0013674 Bombyx mori miR-2778d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 1 cagagt 6
>bmo-miR-2778c-3p MIMAT0013667 Bombyx mori miR-2778c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 1 cagagt 6
>bmo-miR-2778a-3p MIMAT0013665 Bombyx mori miR-2778a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 1 cagagt 6
>bta-miR-2461-5p MIMAT0012047 Bos taurus miR-2461-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagagt 7
||||||
Sbjct: 8 cagagt 3
>bta-miR-2319b MIMAT0011843 Bos taurus miR-2319b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagagt 7
||||||
Sbjct: 7 cagagt 2
>bta-miR-2319a MIMAT0011842 Bos taurus miR-2319a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagagt 7
||||||
Sbjct: 8 cagagt 3
>cel-miR-2217a-5p MIMAT0011451 Caenorhabditis elegans
miR-2217a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagagt 7
||||||
Sbjct: 1 cagagt 6
>mmu-miR-1896 MIMAT0007873 Mus musculus miR-1896
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>osa-miR1863a MIMAT0007813 Oryza sativa miR1863a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>cfa-miR-1837 MIMAT0006630 Canis familiaris miR-1837
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>gga-miR-1756b MIMAT0007712 Gallus gallus miR-1756b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>gga-miR-1783 MIMAT0007695 Gallus gallus miR-1783
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>gga-miR-1757 MIMAT0007664 Gallus gallus miR-1757
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 1 tcagag 6
>gga-miR-1700 MIMAT0007592 Gallus gallus miR-1700
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>gga-miR-1650 MIMAT0007528 Gallus gallus miR-1650
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>mdo-miR-1547-5p MIMAT0006147 Monodelphis domestica miR-1547-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>gga-miR-1465 MIMAT0007343 Gallus gallus miR-1465
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcagag 6
||||||
Sbjct: 3 tcagag 8
>mml-miR-514a-5p MIMAT0026748 Macaca mulatta miR-514a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagagt 7
||||||
Sbjct: 7 cagagt 2
>ath-miR829-3p.1 MIMAT0004245 Arabidopsis thaliana miR829-3p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcagag 6
||||||
Sbjct: 8 tcagag 3
>hsa-miR-514a-5p MIMAT0022702 Homo sapiens miR-514a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagagt 7
||||||
Sbjct: 7 cagagt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 122
Number of extensions: 112
Number of successful extensions: 72
Number of sequences better than 100.0: 72
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 72
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)