BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m14-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdv2-miR-M14-3p MIMAT0004452 Mareks disease miR-M14-3p 16 6.9
ata-miR2118d-3p MIMAT0037258 Aegilops tauschii miR2118d-3p 14 27
ata-miR2118c-3p MIMAT0037114 Aegilops tauschii miR2118c-3p 14 27
ssc-miR-9858-5p MIMAT0037077 Sus scrofa miR-9858-5p 14 27
bdi-miR2118b MIMAT0035532 Brachypodium distachyon miR2118b 14 27
mml-miR-7198-5p MIMAT0028360 Macaca mulatta miR-7198-5p 14 27
mml-miR-7179-3p MIMAT0028303 Macaca mulatta miR-7179-3p 14 27
sbi-miR2118-3p MIMAT0026427 Sorghum bicolor miR2118-3p 14 27
hsa-miR-6876-5p MIMAT0027652 Homo sapiens miR-6876-5p 14 27
ola-miR-459-3p MIMAT0022665 Oryzias latipes miR-459-3p 14 27
ssp-miR1432 MIMAT0020290 Saccharum sp. miR1432 14 27
hsa-miR-4476 MIMAT0019003 Homo sapiens miR-4476 14 27
bmo-miR-2805 MIMAT0013713 Bombyx mori miR-2805 14 27
zma-miR2118g MIMAT0011766 Zea mays miR2118g 14 27
zma-miR2118e MIMAT0011764 Zea mays miR2118e 14 27
zma-miR2118d MIMAT0011763 Zea mays miR2118d 14 27
zma-miR2118a MIMAT0011760 Zea mays miR2118a 14 27
osa-miR2118m MIMAT0011752 Oryza sativa miR2118m 14 27
osa-miR2118k MIMAT0011750 Oryza sativa miR2118k 14 27
osa-miR2118j MIMAT0011749 Oryza sativa miR2118j 14 27
osa-miR2118h MIMAT0011747 Oryza sativa miR2118h 14 27
osa-miR2118f MIMAT0011745 Oryza sativa miR2118f 14 27
osa-miR2118d MIMAT0011743 Oryza sativa miR2118d 14 27
ppt-miR1219c MIMAT0003910 Physcomitrella patens miR1219c 14 27
ppt-miR1219b MIMAT0003909 Physcomitrella patens miR1219b 14 27
ppt-miR1219a MIMAT0003908 Physcomitrella patens miR1219a 14 27
mmu-miR-691 MIMAT0003470 Mus musculus miR-691 14 27
dre-miR-461 MIMAT0001889 Danio rerio miR-461 14 27
>mdv2-miR-M14-3p MIMAT0004452 Mareks disease miR-M14-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcaggaag 8
||||||||
Sbjct: 1 tcaggaag 8
>ata-miR2118d-3p MIMAT0037258 Aegilops tauschii miR2118d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>ata-miR2118c-3p MIMAT0037114 Aegilops tauschii miR2118c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>ssc-miR-9858-5p MIMAT0037077 Sus scrofa miR-9858-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>bdi-miR2118b MIMAT0035532 Brachypodium distachyon miR2118b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>mml-miR-7198-5p MIMAT0028360 Macaca mulatta miR-7198-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaggaa 7
|||||||
Sbjct: 2 tcaggaa 8
>mml-miR-7179-3p MIMAT0028303 Macaca mulatta miR-7179-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaggaa 7
|||||||
Sbjct: 1 tcaggaa 7
>sbi-miR2118-3p MIMAT0026427 Sorghum bicolor miR2118-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>hsa-miR-6876-5p MIMAT0027652 Homo sapiens miR-6876-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 caggaag 8
|||||||
Sbjct: 1 caggaag 7
>ola-miR-459-3p MIMAT0022665 Oryzias latipes miR-459-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 caggaag 8
|||||||
Sbjct: 1 caggaag 7
>ssp-miR1432 MIMAT0020290 Saccharum sp. miR1432
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaggaa 7
|||||||
Sbjct: 2 tcaggaa 8
>hsa-miR-4476 MIMAT0019003 Homo sapiens miR-4476
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 caggaag 8
|||||||
Sbjct: 1 caggaag 7
>bmo-miR-2805 MIMAT0013713 Bombyx mori miR-2805
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>zma-miR2118g MIMAT0011766 Zea mays miR2118g
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>zma-miR2118e MIMAT0011764 Zea mays miR2118e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>zma-miR2118d MIMAT0011763 Zea mays miR2118d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>zma-miR2118a MIMAT0011760 Zea mays miR2118a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>osa-miR2118m MIMAT0011752 Oryza sativa miR2118m
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>osa-miR2118k MIMAT0011750 Oryza sativa miR2118k
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>osa-miR2118j MIMAT0011749 Oryza sativa miR2118j
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>osa-miR2118h MIMAT0011747 Oryza sativa miR2118h
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>osa-miR2118f MIMAT0011745 Oryza sativa miR2118f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>osa-miR2118d MIMAT0011743 Oryza sativa miR2118d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 7 tcaggaa 1
>ppt-miR1219c MIMAT0003910 Physcomitrella patens miR1219c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 caggaag 8
|||||||
Sbjct: 7 caggaag 1
>ppt-miR1219b MIMAT0003909 Physcomitrella patens miR1219b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 caggaag 8
|||||||
Sbjct: 7 caggaag 1
>ppt-miR1219a MIMAT0003908 Physcomitrella patens miR1219a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 caggaag 8
|||||||
Sbjct: 7 caggaag 1
>mmu-miR-691 MIMAT0003470 Mus musculus miR-691
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcaggaa 7
|||||||
Sbjct: 8 tcaggaa 2
>dre-miR-461 MIMAT0001889 Danio rerio miR-461
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaggaa 7
|||||||
Sbjct: 1 tcaggaa 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 214
Number of extensions: 185
Number of successful extensions: 136
Number of sequences better than 100.0: 28
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 28
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
