BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= blv-miR-b5-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-4650-5p MIMAT0019713 Homo sapiens miR-4650-5p 14 20
hsa-miR-1972 MIMAT0009447 Homo sapiens miR-1972 14 20
gga-miR-1672 MIMAT0007556 Gallus gallus miR-1672 14 20
chi-miR-15a-3p MIMAT0035991 Capra hircus miR-15a-3p 12 80
bfv-miR-BF2-3p MIMAT0035756 Bovine foamy miR-BF2-3p 12 80
bhv5-miR-B12 MIMAT0035709 Bovine herpesvirus miR-B12 12 80
gsa-miR-87-5p MIMAT0035242 Gyrodactylus salaris miR-87-5p 12 80
efu-miR-9346 MIMAT0035116 Eptesicus fuscus miR-9346 12 80
efu-miR-9237a MIMAT0034853 Eptesicus fuscus miR-9237a 12 80
str-miR-7880x-5p MIMAT0033478 Strongyloides ratti miR-7880x-5p 12 80
str-miR-7880f-5p MIMAT0033321 Strongyloides ratti miR-7880f-5p 12 80
ssa-miR-15d-3p MIMAT0032402 Salmo salar miR-15d-3p 12 80
prd-miR-87-5p MIMAT0030656 Panagrellus redivivus miR-87-5p 12 80
mmu-miR-1191b-5p MIMAT0029866 Mus musculus miR-1191b-5p 12 80
ipu-miR-7551 MIMAT0029547 Ictalurus punctatus miR-7551 12 80
mml-miR-7165-3p MIMAT0028263 Macaca mulatta miR-7165-3p 12 80
bma-miR-5841 MIMAT0026339 Brugia malayi miR-5841 12 80
hsa-miR-7107-5p MIMAT0028111 Homo sapiens miR-7107-5p 12 80
rno-miR-344g MIMAT0025052 Rattus norvegicus miR-344g 12 80
ggo-miR-484 MIMAT0024200 Gorilla gorilla miR-484 12 80
ptr-miR-4742 MIMAT0024043 Pan troglodytes miR-4742 12 80
cgr-miR-484 MIMAT0023966 Cricetulus griseus miR-484 12 80
cgr-miR-15a-3p MIMAT0023790 Cricetulus griseus miR-15a-3p 12 80
hsa-miR-6078 MIMAT0023703 Homo sapiens miR-6078 12 80
asu-miR-87a-5p MIMAT0021481 Ascaris suum miR-87a-5p 12 80
rmi-miR-5319 MIMAT0021392 Rhipicephalus microplus miR-5319 12 80
hsa-miR-4742-5p MIMAT0019872 Homo sapiens miR-4742-5p 12 80
hsa-miR-4692 MIMAT0019783 Homo sapiens miR-4692 12 80
hsa-miR-4293 MIMAT0016848 Homo sapiens miR-4293 12 80
rno-miR-344b-5p MIMAT0017811 Rattus norvegicus miR-344b-5p 12 80
sja-miR-3483-3p MIMAT0016287 Schistosoma japonicum miR-3483-3p 12 80
ppy-miR-484 MIMAT0015901 Pongo pygmaeus miR-484 12 80
esi-miR3456-3p MIMAT0017786 Ectocarpus siliculosus miR3456-3p 12 80
bmo-miR-3383-5p MIMAT0015577 Bombyx mori miR-3383-5p 12 80
bmo-miR-3216 MIMAT0015396 Bombyx mori miR-3216 12 80
mmu-miR-344g-5p MIMAT0014929 Mus musculus miR-344g-5p 12 80
mmu-miR-344c-5p MIMAT0014927 Mus musculus miR-344c-5p 12 80
mmu-miR-344b-5p MIMAT0014925 Mus musculus miR-344b-5p 12 80
mmu-miR-3091-3p MIMAT0014904 Mus musculus miR-3091-3p 12 80
tgu-miR-15a-3p MIMAT0027000 Taeniopygia guttata miR-15a-3p 12 80
zma-miR169q-3p MIMAT0015328 Zea mays miR169q-3p 12 80
zma-miR169n-3p MIMAT0015325 Zea mays miR169n-3p 12 80
mmu-miR-2861 MIMAT0013803 Mus musculus miR-2861 12 80
hsa-miR-2861 MIMAT0013802 Homo sapiens miR-2861 12 80
mml-miR-1234 MIMAT0012790 Macaca mulatta miR-1234 12 80
bta-miR-2306 MIMAT0011818 Bos taurus miR-2306 12 80
ptr-miR-484 MIMAT0008158 Pan troglodytes miR-484 12 80
ptr-miR-1234 MIMAT0007967 Pan troglodytes miR-1234 12 80
mml-miR-484 MIMAT0006341 Macaca mulatta miR-484 12 80
gga-miR-1769-5p MIMAT0007677 Gallus gallus miR-1769-5p 12 80
gga-miR-1764-5p MIMAT0007671 Gallus gallus miR-1764-5p 12 80
gga-miR-1660 MIMAT0007541 Gallus gallus miR-1660 12 80
oan-miR-15a-3p MIMAT0007165 Ornithorhynchus anatinus miR-15a-3p 12 80
hsa-miR-1234-3p MIMAT0005589 Homo sapiens miR-1234-3p 12 80
rno-miR-484 MIMAT0005319 Rattus norvegicus miR-484 12 80
pta-miR948 MIMAT0005008 Pinus taeda miR948 12 80
mdo-miR-15a-3p MIMAT0026689 Monodelphis domestica miR-15a-3p 12 80
bta-miR-484 MIMAT0003535 Bos taurus miR-484 12 80
mmu-miR-344d-1-5p MIMAT0014819 Mus musculus miR-344d-1-5p 12 80
mmu-miR-344d-3-5p MIMAT0014807 Mus musculus miR-344d-3-5p 12 80
mmu-miR-484 MIMAT0003127 Mus musculus miR-484 12 80
hsa-miR-484 MIMAT0002174 Homo sapiens miR-484 12 80
dre-miR-15a-3p MIMAT0003395 Danio rerio miR-15a-3p 12 80
mmu-miR-344-5p MIMAT0017038 Mus musculus miR-344-5p 12 80
rno-miR-344a-5p MIMAT0004654 Rattus norvegicus miR-344a-5p 12 80
mmu-miR-15a-3p MIMAT0004624 Mus musculus miR-15a-3p 12 80
hsa-miR-15a-3p MIMAT0004488 Homo sapiens miR-15a-3p 12 80
>hsa-miR-4650-5p MIMAT0019713 Homo sapiens miR-4650-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaggcc 7
|||||||
Sbjct: 1 tcaggcc 7
>hsa-miR-1972 MIMAT0009447 Homo sapiens miR-1972
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaggcc 7
|||||||
Sbjct: 1 tcaggcc 7
>gga-miR-1672 MIMAT0007556 Gallus gallus miR-1672
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcaggcc 7
|||||||
Sbjct: 2 tcaggcc 8
>chi-miR-15a-3p MIMAT0035991 Capra hircus miR-15a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caggcc 7
||||||
Sbjct: 1 caggcc 6
>bfv-miR-BF2-3p MIMAT0035756 Bovine foamy miR-BF2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>bhv5-miR-B12 MIMAT0035709 Bovine herpesvirus miR-B12
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caggcc 7
||||||
Sbjct: 1 caggcc 6
>gsa-miR-87-5p MIMAT0035242 Gyrodactylus salaris miR-87-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaggc 6
||||||
Sbjct: 8 tcaggc 3
>efu-miR-9346 MIMAT0035116 Eptesicus fuscus miR-9346
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 8 caggcc 3
>efu-miR-9237a MIMAT0034853 Eptesicus fuscus miR-9237a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caggcc 7
||||||
Sbjct: 3 caggcc 8
>str-miR-7880x-5p MIMAT0033478 Strongyloides ratti miR-7880x-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 7 caggcc 2
>str-miR-7880f-5p MIMAT0033321 Strongyloides ratti miR-7880f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 6 caggcc 1
>ssa-miR-15d-3p MIMAT0032402 Salmo salar miR-15d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caggcc 7
||||||
Sbjct: 1 caggcc 6
>prd-miR-87-5p MIMAT0030656 Panagrellus redivivus miR-87-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 6 caggcc 1
>mmu-miR-1191b-5p MIMAT0029866 Mus musculus miR-1191b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>ipu-miR-7551 MIMAT0029547 Ictalurus punctatus miR-7551
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 8 caggcc 3
>mml-miR-7165-3p MIMAT0028263 Macaca mulatta miR-7165-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 8 caggcc 3
>bma-miR-5841 MIMAT0026339 Brugia malayi miR-5841
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 8 caggcc 3
>hsa-miR-7107-5p MIMAT0028111 Homo sapiens miR-7107-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 8 caggcc 3
>rno-miR-344g MIMAT0025052 Rattus norvegicus miR-344g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 3 tcaggc 8
>ggo-miR-484 MIMAT0024200 Gorilla gorilla miR-484
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>ptr-miR-4742 MIMAT0024043 Pan troglodytes miR-4742
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>cgr-miR-484 MIMAT0023966 Cricetulus griseus miR-484
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>cgr-miR-15a-3p MIMAT0023790 Cricetulus griseus miR-15a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caggcc 7
||||||
Sbjct: 1 caggcc 6
>hsa-miR-6078 MIMAT0023703 Homo sapiens miR-6078
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaggc 6
||||||
Sbjct: 8 tcaggc 3
>asu-miR-87a-5p MIMAT0021481 Ascaris suum miR-87a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaggc 6
||||||
Sbjct: 8 tcaggc 3
>rmi-miR-5319 MIMAT0021392 Rhipicephalus microplus miR-5319
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caggcc 7
||||||
Sbjct: 1 caggcc 6
>hsa-miR-4742-5p MIMAT0019872 Homo sapiens miR-4742-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>hsa-miR-4692 MIMAT0019783 Homo sapiens miR-4692
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>hsa-miR-4293 MIMAT0016848 Homo sapiens miR-4293
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaggc 6
||||||
Sbjct: 8 tcaggc 3
>rno-miR-344b-5p MIMAT0017811 Rattus norvegicus miR-344b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 3 tcaggc 8
>sja-miR-3483-3p MIMAT0016287 Schistosoma japonicum miR-3483-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaggc 6
||||||
Sbjct: 8 tcaggc 3
>ppy-miR-484 MIMAT0015901 Pongo pygmaeus miR-484
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>esi-miR3456-3p MIMAT0017786 Ectocarpus siliculosus miR3456-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 8 caggcc 3
>bmo-miR-3383-5p MIMAT0015577 Bombyx mori miR-3383-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcaggc 6
||||||
Sbjct: 8 tcaggc 3
>bmo-miR-3216 MIMAT0015396 Bombyx mori miR-3216
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 3 tcaggc 8
>mmu-miR-344g-5p MIMAT0014929 Mus musculus miR-344g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 3 tcaggc 8
>mmu-miR-344c-5p MIMAT0014927 Mus musculus miR-344c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 3 tcaggc 8
>mmu-miR-344b-5p MIMAT0014925 Mus musculus miR-344b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 3 tcaggc 8
>mmu-miR-3091-3p MIMAT0014904 Mus musculus miR-3091-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 8 caggcc 3
>tgu-miR-15a-3p MIMAT0027000 Taeniopygia guttata miR-15a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caggcc 7
||||||
Sbjct: 1 caggcc 6
>zma-miR169q-3p MIMAT0015328 Zea mays miR169q-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caggcc 7
||||||
Sbjct: 3 caggcc 8
>zma-miR169n-3p MIMAT0015325 Zea mays miR169n-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caggcc 7
||||||
Sbjct: 3 caggcc 8
>mmu-miR-2861 MIMAT0013803 Mus musculus miR-2861
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 8 caggcc 3
>hsa-miR-2861 MIMAT0013802 Homo sapiens miR-2861
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 8 caggcc 3
>mml-miR-1234 MIMAT0012790 Macaca mulatta miR-1234
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 8 caggcc 3
>bta-miR-2306 MIMAT0011818 Bos taurus miR-2306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caggcc 7
||||||
Sbjct: 1 caggcc 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 8 caggcc 3
>ptr-miR-484 MIMAT0008158 Pan troglodytes miR-484
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>ptr-miR-1234 MIMAT0007967 Pan troglodytes miR-1234
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 8 caggcc 3
>mml-miR-484 MIMAT0006341 Macaca mulatta miR-484
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>gga-miR-1769-5p MIMAT0007677 Gallus gallus miR-1769-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 3 tcaggc 8
>gga-miR-1764-5p MIMAT0007671 Gallus gallus miR-1764-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 3 tcaggc 8
>gga-miR-1660 MIMAT0007541 Gallus gallus miR-1660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 8 caggcc 3
>oan-miR-15a-3p MIMAT0007165 Ornithorhynchus anatinus miR-15a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caggcc 7
||||||
Sbjct: 1 caggcc 6
>hsa-miR-1234-3p MIMAT0005589 Homo sapiens miR-1234-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caggcc 7
||||||
Sbjct: 8 caggcc 3
>rno-miR-484 MIMAT0005319 Rattus norvegicus miR-484
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>pta-miR948 MIMAT0005008 Pinus taeda miR948
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>mdo-miR-15a-3p MIMAT0026689 Monodelphis domestica miR-15a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caggcc 7
||||||
Sbjct: 1 caggcc 6
>bta-miR-484 MIMAT0003535 Bos taurus miR-484
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>mmu-miR-344d-1-5p MIMAT0014819 Mus musculus miR-344d-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 3 tcaggc 8
>mmu-miR-344d-3-5p MIMAT0014807 Mus musculus miR-344d-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 3 tcaggc 8
>mmu-miR-484 MIMAT0003127 Mus musculus miR-484
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>hsa-miR-484 MIMAT0002174 Homo sapiens miR-484
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>dre-miR-15a-3p MIMAT0003395 Danio rerio miR-15a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caggcc 7
||||||
Sbjct: 1 caggcc 6
>mmu-miR-344-5p MIMAT0017038 Mus musculus miR-344-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 3 tcaggc 8
>rno-miR-344a-5p MIMAT0004654 Rattus norvegicus miR-344a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcaggc 6
||||||
Sbjct: 1 tcaggc 6
>mmu-miR-15a-3p MIMAT0004624 Mus musculus miR-15a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caggcc 7
||||||
Sbjct: 1 caggcc 6
>hsa-miR-15a-3p MIMAT0004488 Homo sapiens miR-15a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caggcc 7
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Sbjct: 1 caggcc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 82
Number of extensions: 79
Number of successful extensions: 68
Number of sequences better than 100.0: 67
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 68
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
