BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bfv-miR-bf2-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bfv-miR-BF2-5p MIMAT0035755 Bovine foamy miR-BF2-5p 16 6.9
cel-miR-8188-3p MIMAT0032790 Caenorhabditis elegans miR-8188-3p 14 27
rno-miR-6324 MIMAT0025063 Rattus norvegicus miR-6324 14 27
cgr-miR-222-5p MIMAT0023860 Cricetulus griseus miR-222-5p 14 27
ptr-miR-936 MIMAT0008343 Pan troglodytes miR-936 14 27
oan-miR-222b-5p MIMAT0007056 Ornithorhynchus anatinus miR-222b-5p 14 27
hsa-miR-936 MIMAT0004979 Homo sapiens miR-936 14 27
mmu-miR-222-5p MIMAT0017061 Mus musculus miR-222-5p 14 27
hsa-miR-222-5p MIMAT0004569 Homo sapiens miR-222-5p 14 27
>bfv-miR-BF2-5p MIMAT0035755 Bovine foamy miR-BF2-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcagtaga 8
||||||||
Sbjct: 1 tcagtaga 8
>cel-miR-8188-3p MIMAT0032790 Caenorhabditis elegans miR-8188-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagtaga 8
|||||||
Sbjct: 1 cagtaga 7
>rno-miR-6324 MIMAT0025063 Rattus norvegicus miR-6324
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagtag 7
|||||||
Sbjct: 1 tcagtag 7
>cgr-miR-222-5p MIMAT0023860 Cricetulus griseus miR-222-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagtag 7
|||||||
Sbjct: 1 tcagtag 7
>ptr-miR-936 MIMAT0008343 Pan troglodytes miR-936
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagtaga 8
|||||||
Sbjct: 2 cagtaga 8
>oan-miR-222b-5p MIMAT0007056 Ornithorhynchus anatinus
miR-222b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagtag 7
|||||||
Sbjct: 1 tcagtag 7
>hsa-miR-936 MIMAT0004979 Homo sapiens miR-936
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagtaga 8
|||||||
Sbjct: 2 cagtaga 8
>mmu-miR-222-5p MIMAT0017061 Mus musculus miR-222-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagtag 7
|||||||
Sbjct: 1 tcagtag 7
>hsa-miR-222-5p MIMAT0004569 Homo sapiens miR-222-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagtag 7
|||||||
Sbjct: 2 tcagtag 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 155
Number of extensions: 145
Number of successful extensions: 85
Number of sequences better than 100.0: 9
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
