BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= blv-miR-b1-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9199 MIMAT0034784 Eptesicus fuscus miR-9199 16 6.9
blv-miR-B1-3p MIMAT0025859 Bovine leukemia miR-B1-3p 16 6.9
dme-miR-9385-5p MIMAT0035233 Drosophila melanogaster miR-9385-5p 14 27
efu-miR-9302 MIMAT0034975 Eptesicus fuscus miR-9302 14 27
gra-miR8720 MIMAT0034109 Gossypium raimondii miR8720 14 27
mmu-miR-7089-3p MIMAT0028085 Mus musculus miR-7089-3p 14 27
hsa-miR-6733-3p MIMAT0027368 Homo sapiens miR-6733-3p 14 27
gga-miR-6613-3p MIMAT0025708 Gallus gallus miR-6613-3p 14 27
rno-miR-3587 MIMAT0017883 Rattus norvegicus miR-3587 14 27
cte-miR-10d MIMAT0013534 Capitella teleta miR-10d 14 27
dme-miR-979-5p MIMAT0020876 Drosophila melanogaster miR-979-5p 14 27
ath-miR840-5p MIMAT0004262 Arabidopsis thaliana miR840-5p 14 27
>efu-miR-9199 MIMAT0034784 Eptesicus fuscus miR-9199
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tcagtgta 8
||||||||
Sbjct: 8 tcagtgta 1
>blv-miR-B1-3p MIMAT0025859 Bovine leukemia miR-B1-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcagtgta 8
||||||||
Sbjct: 1 tcagtgta 8
>dme-miR-9385-5p MIMAT0035233 Drosophila melanogaster
miR-9385-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagtgta 8
|||||||
Sbjct: 2 cagtgta 8
>efu-miR-9302 MIMAT0034975 Eptesicus fuscus miR-9302
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagtgt 7
|||||||
Sbjct: 2 tcagtgt 8
>gra-miR8720 MIMAT0034109 Gossypium raimondii miR8720
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagtgta 8
|||||||
Sbjct: 1 cagtgta 7
>mmu-miR-7089-3p MIMAT0028085 Mus musculus miR-7089-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagtgt 7
|||||||
Sbjct: 1 tcagtgt 7
>hsa-miR-6733-3p MIMAT0027368 Homo sapiens miR-6733-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcagtgt 7
|||||||
Sbjct: 1 tcagtgt 7
>gga-miR-6613-3p MIMAT0025708 Gallus gallus miR-6613-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagtgt 7
|||||||
Sbjct: 7 tcagtgt 1
>rno-miR-3587 MIMAT0017883 Rattus norvegicus miR-3587
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagtgt 7
|||||||
Sbjct: 8 tcagtgt 2
>cte-miR-10d MIMAT0013534 Capitella teleta miR-10d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagtgta 8
|||||||
Sbjct: 7 cagtgta 1
>dme-miR-979-5p MIMAT0020876 Drosophila melanogaster miR-979-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagtgt 7
|||||||
Sbjct: 7 tcagtgt 1
>ath-miR840-5p MIMAT0004262 Arabidopsis thaliana miR840-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcagtgt 7
|||||||
Sbjct: 7 tcagtgt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 311
Number of extensions: 297
Number of successful extensions: 254
Number of sequences better than 100.0: 12
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
