BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-2-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sma-miR-8467-3p MIMAT0033654 Schistosoma mansoni miR-8467-3p 14 27
hsa-miR-6729-3p MIMAT0027360 Homo sapiens miR-6729-3p 14 27
prv-miR-LLT2 MIMAT0025305 Pseudorabies virus miR-LLT2 14 27
aca-miR-5417 MIMAT0022037 Anolis carolinensis miR-5417 14 27
hsa-miR-5187-5p MIMAT0021117 Homo sapiens miR-5187-5p 14 27
tgu-miR-2974 MIMAT0014484 Taeniopygia guttata miR-2974 14 27
hvt-miR-H11 MIMAT0012876 Herpesvirus of miR-H11 14 27
bmo-miR-2836 MIMAT0013750 Bombyx mori miR-2836 14 27
bta-miR-2418 MIMAT0011982 Bos taurus miR-2418 14 27
>sma-miR-8467-3p MIMAT0033654 Schistosoma mansoni miR-8467-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcatccc 7
|||||||
Sbjct: 8 tcatccc 2
>hsa-miR-6729-3p MIMAT0027360 Homo sapiens miR-6729-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcatccc 7
|||||||
Sbjct: 1 tcatccc 7
>prv-miR-LLT2 MIMAT0025305 Pseudorabies virus miR-LLT2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcatccc 7
|||||||
Sbjct: 2 tcatccc 8
>aca-miR-5417 MIMAT0022037 Anolis carolinensis miR-5417
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcatccc 7
|||||||
Sbjct: 1 tcatccc 7
>hsa-miR-5187-5p MIMAT0021117 Homo sapiens miR-5187-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcatccc 7
|||||||
Sbjct: 8 tcatccc 2
>tgu-miR-2974 MIMAT0014484 Taeniopygia guttata miR-2974
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 catcccg 8
|||||||
Sbjct: 8 catcccg 2
>hvt-miR-H11 MIMAT0012876 Herpesvirus of miR-H11
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcatccc 7
|||||||
Sbjct: 7 tcatccc 1
>bmo-miR-2836 MIMAT0013750 Bombyx mori miR-2836
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 catcccg 8
|||||||
Sbjct: 1 catcccg 7
>bta-miR-2418 MIMAT0011982 Bos taurus miR-2418
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcatccc 7
|||||||
Sbjct: 8 tcatccc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 138
Number of extensions: 129
Number of successful extensions: 98
Number of sequences better than 100.0: 9
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
