BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h16-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cin-miR-5597-5p MIMAT0022317 Ciona intestinalis miR-5597-5p 14 20
amg-miR2086 MIMAT0022681 Acacia mangium miR2086 14 20
aau-miR2086 MIMAT0022676 Acacia auriculiformis miR2086 14 20
hvt-miR-H16-5p MIMAT0012870 Herpesvirus of miR-H16-5p 14 20
mtr-miR2086-3p MIMAT0010027 Medicago truncatula miR2086-3p 14 20
ath-miR868-5p MIMAT0020355 Arabidopsis thaliana miR868-5p 14 20
rno-miR-1297 MIMAT0035723 Rattus norvegicus miR-1297 12 80
dme-miR-9379-5p MIMAT0035221 Drosophila melanogaster miR-9379-5p 12 80
gra-miR8709b MIMAT0034169 Gossypium raimondii miR8709b 12 80
gra-miR8710b MIMAT0034098 Gossypium raimondii miR8710b 12 80
gra-miR8710a MIMAT0034097 Gossypium raimondii miR8710a 12 80
gra-miR8709c MIMAT0034096 Gossypium raimondii miR8709c 12 80
sma-miR-8428-3p MIMAT0033561 Schistosoma mansoni miR-8428-3p 12 80
ppc-miR-8356a-3p MIMAT0033275 Pristionchus pacificus miR-8356a-3p 12 80
stu-miR167d-3p MIMAT0031310 Solanum tuberosum miR167d-3p 12 80
stu-miR167a-3p MIMAT0031308 Solanum tuberosum miR167a-3p 12 80
stu-miR167b-3p MIMAT0031306 Solanum tuberosum miR167b-3p 12 80
stu-miR8049-3p MIMAT0031237 Solanum tuberosum miR8049-3p 12 80
prd-miR-7924-5p MIMAT0030692 Panagrellus redivivus miR-7924-5p 12 80
bdi-miR7784b-5p MIMAT0030324 Brachypodium distachyon miR7784b-5p 12 80
bdi-miR7784a-5p MIMAT0030322 Brachypodium distachyon miR7784a-5p 12 80
bdi-miR7781-3p MIMAT0030317 Brachypodium distachyon miR7781-3p 12 80
bdi-miR7769-3p MIMAT0030289 Brachypodium distachyon miR7769-3p 12 80
bdi-miR166i-5p MIMAT0030089 Brachypodium distachyon miR166i-5p 12 80
crm-miR-7582 MIMAT0029631 Caenorhabditis remanei miR-7582 12 80
cbr-miR-7582 MIMAT0029583 Caenorhabditis briggsae miR-7582 12 80
mdo-miR-7257-5p MIMAT0028480 Monodelphis domestica miR-7257-5p 12 80
mml-miR-7175-5p MIMAT0028290 Macaca mulatta miR-7175-5p 12 80
mmu-miR-6516-3p MIMAT0027344 Mus musculus miR-6516-3p 12 80
rno-miR-6316 MIMAT0025053 Rattus norvegicus miR-6316 12 80
cgr-miR-322-3p MIMAT0023908 Cricetulus griseus miR-322-3p 12 80
mtr-miR167b-3p MIMAT0022234 Medicago truncatula miR167b-3p 12 80
cel-miR-5549-3p MIMAT0022190 Caenorhabditis elegans miR-5549-3p 12 80
aca-miR-5448 MIMAT0022070 Anolis carolinensis miR-5448 12 80
mtr-miR5232 MIMAT0021217 Medicago truncatula miR5232 12 80
aly-miR848-3p MIMAT0017690 Arabidopsis lyrata miR848-3p 12 80
aly-miR167a-3p MIMAT0017474 Arabidopsis lyrata miR167a-3p 12 80
bmo-miR-3350 MIMAT0015535 Bombyx mori miR-3350 12 80
zma-miR167j-3p MIMAT0015322 Zea mays miR167j-3p 12 80
osa-miR2905 MIMAT0013819 Oryza sativa miR2905 12 80
bta-miR-1434-5p MIMAT0012039 Bos taurus miR-1434-5p 12 80
aqu-miR-2015-5p MIMAT0009688 Amphimedon queenslandica miR-2015-5p 12 80
dya-miR-288 MIMAT0009094 Drosophila yakuba miR-288 12 80
dwi-miR-288 MIMAT0009050 Drosophila willistoni miR-288 12 80
dvi-miR-288 MIMAT0008952 Drosophila virilis miR-288 12 80
dsi-miR-288 MIMAT0008897 Drosophila simulans miR-288 12 80
dse-miR-288 MIMAT0008806 Drosophila sechellia miR-288 12 80
dpe-miR-288 MIMAT0008753 Drosophila persimilis miR-288 12 80
dmo-miR-288 MIMAT0008675 Drosophila mojavensis miR-288 12 80
dgr-miR-288 MIMAT0008600 Drosophila grimshawi miR-288 12 80
der-miR-288 MIMAT0008551 Drosophila erecta miR-288 12 80
dan-miR-288 MIMAT0008406 Drosophila ananassae miR-288 12 80
gga-miR-1667-3p MIMAT0007550 Gallus gallus miR-1667-3p 12 80
gga-miR-1563 MIMAT0007422 Gallus gallus miR-1563 12 80
ath-miR848 MIMAT0004270 Arabidopsis thaliana miR848 12 80
ptc-miR478f MIMAT0002081 Populus trichocarpa miR478f 12 80
ptc-miR478d MIMAT0002079 Populus trichocarpa miR478d 12 80
zma-miR169f-3p MIMAT0015194 Zea mays miR169f-3p 12 80
zma-miR167i-3p MIMAT0015190 Zea mays miR167i-3p 12 80
zma-miR167h-3p MIMAT0015189 Zea mays miR167h-3p 12 80
dps-miR-288 MIMAT0001252 Drosophila pseudoobscura miR-288 12 80
mmu-miR-322-3p MIMAT0000549 Mus musculus miR-322-3p 12 80
rno-miR-322-3p MIMAT0000547 Rattus norvegicus miR-322-3p 12 80
dme-miR-288-3p MIMAT0000363 Drosophila melanogaster miR-288-3p 12 80
ath-miR167a-3p MIMAT0031883 Arabidopsis thaliana miR167a-3p 12 80
hsa-miR-96-3p MIMAT0004510 Homo sapiens miR-96-3p 12 80
>cin-miR-5597-5p MIMAT0022317 Ciona intestinalis miR-5597-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcatgtc 7
|||||||
Sbjct: 8 tcatgtc 2
>amg-miR2086 MIMAT0022681 Acacia mangium miR2086
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcatgtc 7
|||||||
Sbjct: 7 tcatgtc 1
>aau-miR2086 MIMAT0022676 Acacia auriculiformis miR2086
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcatgtc 7
|||||||
Sbjct: 7 tcatgtc 1
>hvt-miR-H16-5p MIMAT0012870 Herpesvirus of miR-H16-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcatgtc 7
|||||||
Sbjct: 2 tcatgtc 8
>mtr-miR2086-3p MIMAT0010027 Medicago truncatula miR2086-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcatgtc 7
|||||||
Sbjct: 7 tcatgtc 1
>ath-miR868-5p MIMAT0020355 Arabidopsis thaliana miR868-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcatgtc 7
|||||||
Sbjct: 1 tcatgtc 7
>rno-miR-1297 MIMAT0035723 Rattus norvegicus miR-1297
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>dme-miR-9379-5p MIMAT0035221 Drosophila melanogaster
miR-9379-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 catgtc 7
||||||
Sbjct: 3 catgtc 8
>gra-miR8709b MIMAT0034169 Gossypium raimondii miR8709b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 1 tcatgt 6
>gra-miR8710b MIMAT0034098 Gossypium raimondii miR8710b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcatgt 6
||||||
Sbjct: 8 tcatgt 3
>gra-miR8710a MIMAT0034097 Gossypium raimondii miR8710a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcatgt 6
||||||
Sbjct: 8 tcatgt 3
>gra-miR8709c MIMAT0034096 Gossypium raimondii miR8709c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcatgt 6
||||||
Sbjct: 8 tcatgt 3
>sma-miR-8428-3p MIMAT0033561 Schistosoma mansoni miR-8428-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>ppc-miR-8356a-3p MIMAT0033275 Pristionchus pacificus
miR-8356a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>stu-miR167d-3p MIMAT0031310 Solanum tuberosum miR167d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>stu-miR167a-3p MIMAT0031308 Solanum tuberosum miR167a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>stu-miR167b-3p MIMAT0031306 Solanum tuberosum miR167b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>stu-miR8049-3p MIMAT0031237 Solanum tuberosum miR8049-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 catgtc 7
||||||
Sbjct: 1 catgtc 6
>prd-miR-7924-5p MIMAT0030692 Panagrellus redivivus miR-7924-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>bdi-miR7784b-5p MIMAT0030324 Brachypodium distachyon
miR7784b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcatgt 6
||||||
Sbjct: 8 tcatgt 3
>bdi-miR7784a-5p MIMAT0030322 Brachypodium distachyon
miR7784a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcatgt 6
||||||
Sbjct: 8 tcatgt 3
>bdi-miR7781-3p MIMAT0030317 Brachypodium distachyon miR7781-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 catgtc 7
||||||
Sbjct: 1 catgtc 6
>bdi-miR7769-3p MIMAT0030289 Brachypodium distachyon miR7769-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>bdi-miR166i-5p MIMAT0030089 Brachypodium distachyon miR166i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 catgtc 7
||||||
Sbjct: 3 catgtc 8
>crm-miR-7582 MIMAT0029631 Caenorhabditis remanei miR-7582
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 catgtc 7
||||||
Sbjct: 7 catgtc 2
>cbr-miR-7582 MIMAT0029583 Caenorhabditis briggsae miR-7582
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 catgtc 7
||||||
Sbjct: 7 catgtc 2
>mdo-miR-7257-5p MIMAT0028480 Monodelphis domestica miR-7257-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcatgt 6
||||||
Sbjct: 6 tcatgt 1
>mml-miR-7175-5p MIMAT0028290 Macaca mulatta miR-7175-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 catgtc 7
||||||
Sbjct: 8 catgtc 3
>mmu-miR-6516-3p MIMAT0027344 Mus musculus miR-6516-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 1 tcatgt 6
>rno-miR-6316 MIMAT0025053 Rattus norvegicus miR-6316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 catgtc 7
||||||
Sbjct: 1 catgtc 6
>cgr-miR-322-3p MIMAT0023908 Cricetulus griseus miR-322-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcatgt 6
||||||
Sbjct: 8 tcatgt 3
>mtr-miR167b-3p MIMAT0022234 Medicago truncatula miR167b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>cel-miR-5549-3p MIMAT0022190 Caenorhabditis elegans miR-5549-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 1 tcatgt 6
>aca-miR-5448 MIMAT0022070 Anolis carolinensis miR-5448
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 catgtc 7
||||||
Sbjct: 6 catgtc 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 catgtc 7
||||||
Sbjct: 3 catgtc 8
>mtr-miR5232 MIMAT0021217 Medicago truncatula miR5232
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 catgtc 7
||||||
Sbjct: 3 catgtc 8
>aly-miR848-3p MIMAT0017690 Arabidopsis lyrata miR848-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 catgtc 7
||||||
Sbjct: 7 catgtc 2
>aly-miR167a-3p MIMAT0017474 Arabidopsis lyrata miR167a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>bmo-miR-3350 MIMAT0015535 Bombyx mori miR-3350
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 1 tcatgt 6
>zma-miR167j-3p MIMAT0015322 Zea mays miR167j-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>osa-miR2905 MIMAT0013819 Oryza sativa miR2905
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 catgtc 7
||||||
Sbjct: 3 catgtc 8
>bta-miR-1434-5p MIMAT0012039 Bos taurus miR-1434-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcatgt 6
||||||
Sbjct: 8 tcatgt 3
>aqu-miR-2015-5p MIMAT0009688 Amphimedon queenslandica
miR-2015-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 1 tcatgt 6
>dya-miR-288 MIMAT0009094 Drosophila yakuba miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>dwi-miR-288 MIMAT0009050 Drosophila willistoni miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>dvi-miR-288 MIMAT0008952 Drosophila virilis miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>dsi-miR-288 MIMAT0008897 Drosophila simulans miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>dse-miR-288 MIMAT0008806 Drosophila sechellia miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>dpe-miR-288 MIMAT0008753 Drosophila persimilis miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>dmo-miR-288 MIMAT0008675 Drosophila mojavensis miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>dgr-miR-288 MIMAT0008600 Drosophila grimshawi miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>der-miR-288 MIMAT0008551 Drosophila erecta miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>dan-miR-288 MIMAT0008406 Drosophila ananassae miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>gga-miR-1667-3p MIMAT0007550 Gallus gallus miR-1667-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcatgt 6
||||||
Sbjct: 8 tcatgt 3
>gga-miR-1563 MIMAT0007422 Gallus gallus miR-1563
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcatgt 6
||||||
Sbjct: 8 tcatgt 3
>ath-miR848 MIMAT0004270 Arabidopsis thaliana miR848
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 catgtc 7
||||||
Sbjct: 7 catgtc 2
>ptc-miR478f MIMAT0002081 Populus trichocarpa miR478f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 catgtc 7
||||||
Sbjct: 7 catgtc 2
>ptc-miR478d MIMAT0002079 Populus trichocarpa miR478d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 catgtc 7
||||||
Sbjct: 7 catgtc 2
>zma-miR169f-3p MIMAT0015194 Zea mays miR169f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 catgtc 7
||||||
Sbjct: 3 catgtc 8
>zma-miR167i-3p MIMAT0015190 Zea mays miR167i-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>zma-miR167h-3p MIMAT0015189 Zea mays miR167h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>dps-miR-288 MIMAT0001252 Drosophila pseudoobscura miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>mmu-miR-322-3p MIMAT0000549 Mus musculus miR-322-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcatgt 6
||||||
Sbjct: 8 tcatgt 3
>rno-miR-322-3p MIMAT0000547 Rattus norvegicus miR-322-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcatgt 6
||||||
Sbjct: 8 tcatgt 3
>dme-miR-288-3p MIMAT0000363 Drosophila melanogaster miR-288-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>ath-miR167a-3p MIMAT0031883 Arabidopsis thaliana miR167a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
>hsa-miR-96-3p MIMAT0004510 Homo sapiens miR-96-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcatgt 6
||||||
Sbjct: 3 tcatgt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 78
Number of extensions: 72
Number of successful extensions: 67
Number of sequences better than 100.0: 66
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 67
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
