BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h14
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
osa-miR5796 MIMAT0023264 Oryza sativa miR5796 16 6.9
hvt-miR-H14-5p MIMAT0012866 Herpesvirus of miR-H14-5p 16 6.9
aly-miR166h-5p MIMAT0031382 Arabidopsis lyrata miR166h-5p 14 27
bma-miR-5849 MIMAT0026347 Brugia malayi miR-5849 14 27
ppe-miR6290 MIMAT0027325 Prunus persica miR6290 14 27
mtr-miR5560-5p MIMAT0022223 Medicago truncatula miR5560-5p 14 27
aly-miR166f-5p MIMAT0017469 Arabidopsis lyrata miR166f-5p 14 27
aqc-miR171e MIMAT0012570 Aquilegia caerulea miR171e 14 27
bta-miR-2303 MIMAT0011814 Bos taurus miR-2303 14 27
ppc-miR-2235a-5p MIMAT0032107 Pristionchus pacificus miR-2235a-5p 14 27
oan-miR-1368 MIMAT0007033 Ornithorhynchus anatinus miR-1368 14 27
ppt-miR1073-5p MIMAT0005202 Physcomitrella patens miR1073-5p 14 27
mmu-miR-190b-3p MIMAT0017267 Mus musculus miR-190b-3p 14 27
mmu-miR-382-3p MIMAT0004691 Mus musculus miR-382-3p 14 27
>osa-miR5796 MIMAT0023264 Oryza sativa miR5796
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcattcag 8
||||||||
Sbjct: 1 tcattcag 8
>hvt-miR-H14-5p MIMAT0012866 Herpesvirus of miR-H14-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcattcag 8
||||||||
Sbjct: 1 tcattcag 8
>aly-miR166h-5p MIMAT0031382 Arabidopsis lyrata miR166h-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcattca 7
|||||||
Sbjct: 7 tcattca 1
>bma-miR-5849 MIMAT0026347 Brugia malayi miR-5849
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcattca 7
|||||||
Sbjct: 7 tcattca 1
>ppe-miR6290 MIMAT0027325 Prunus persica miR6290
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcattca 7
|||||||
Sbjct: 7 tcattca 1
>mtr-miR5560-5p MIMAT0022223 Medicago truncatula miR5560-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcattca 7
|||||||
Sbjct: 2 tcattca 8
>aly-miR166f-5p MIMAT0017469 Arabidopsis lyrata miR166f-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcattca 7
|||||||
Sbjct: 7 tcattca 1
>aqc-miR171e MIMAT0012570 Aquilegia caerulea miR171e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcattca 7
|||||||
Sbjct: 7 tcattca 1
>bta-miR-2303 MIMAT0011814 Bos taurus miR-2303
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cattcag 8
|||||||
Sbjct: 8 cattcag 2
>ppc-miR-2235a-5p MIMAT0032107 Pristionchus pacificus
miR-2235a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcattca 7
|||||||
Sbjct: 1 tcattca 7
>oan-miR-1368 MIMAT0007033 Ornithorhynchus anatinus miR-1368
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cattcag 8
|||||||
Sbjct: 8 cattcag 2
>ppt-miR1073-5p MIMAT0005202 Physcomitrella patens miR1073-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcattca 7
|||||||
Sbjct: 7 tcattca 1
>mmu-miR-190b-3p MIMAT0017267 Mus musculus miR-190b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cattcag 8
|||||||
Sbjct: 8 cattcag 2
>mmu-miR-382-3p MIMAT0004691 Mus musculus miR-382-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcattca 7
|||||||
Sbjct: 1 tcattca 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 279
Number of extensions: 263
Number of successful extensions: 216
Number of sequences better than 100.0: 14
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
