BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s10
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mtr-miR5561-5p MIMAT0022227 Medicago truncatula miR5561-5p 16 6.9
tae-miR5175-5p MIMAT0035792 Triticum aestivum miR5175-5p 14 27
gra-miR8678 MIMAT0034049 Gossypium raimondii miR8678 14 27
sma-miR-8436-3p MIMAT0033577 Schistosoma mansoni miR-8436-3p 14 27
bbe-miR-4878-5p MIMAT0031701 Branchiostoma belcheri miR-4878-5p 14 27
bdi-miR7731-5p MIMAT0030196 Brachypodium distachyon miR7731-5p 14 27
ptc-miR6439a MIMAT0025242 Populus trichocarpa miR6439a 14 27
mtr-miR5290 MIMAT0021353 Medicago truncatula miR5290 14 27
bdi-miR5183 MIMAT0020732 Brachypodium distachyon miR5183 14 27
bfl-miR-4878 MIMAT0020461 Branchiostoma floridae miR-4878 14 27
>mtr-miR5561-5p MIMAT0022227 Medicago truncatula miR5561-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tccaaatg 8
||||||||
Sbjct: 8 tccaaatg 1
>tae-miR5175-5p MIMAT0035792 Triticum aestivum miR5175-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccaaat 7
|||||||
Sbjct: 2 tccaaat 8
>gra-miR8678 MIMAT0034049 Gossypium raimondii miR8678
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccaaat 7
|||||||
Sbjct: 8 tccaaat 2
>sma-miR-8436-3p MIMAT0033577 Schistosoma mansoni miR-8436-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccaaat 7
|||||||
Sbjct: 8 tccaaat 2
>bbe-miR-4878-5p MIMAT0031701 Branchiostoma belcheri miR-4878-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccaaat 7
|||||||
Sbjct: 7 tccaaat 1
>bdi-miR7731-5p MIMAT0030196 Brachypodium distachyon miR7731-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccaaat 7
|||||||
Sbjct: 2 tccaaat 8
>ptc-miR6439a MIMAT0025242 Populus trichocarpa miR6439a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccaaatg 8
|||||||
Sbjct: 1 ccaaatg 7
>mtr-miR5290 MIMAT0021353 Medicago truncatula miR5290
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccaaat 7
|||||||
Sbjct: 8 tccaaat 2
>bdi-miR5183 MIMAT0020732 Brachypodium distachyon miR5183
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccaaat 7
|||||||
Sbjct: 8 tccaaat 2
>bfl-miR-4878 MIMAT0020461 Branchiostoma floridae miR-4878
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccaaat 7
|||||||
Sbjct: 7 tccaaat 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 287
Number of extensions: 276
Number of successful extensions: 227
Number of sequences better than 100.0: 10
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
