BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m16
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sly-miR9479-5p MIMAT0035477 Solanum lycopersicum miR9479-5p 14 20
eca-miR-8912 MIMAT0034440 Equus caballus miR-8912 14 20
prd-miR-7940c-3p MIMAT0030537 Panagrellus redivivus miR-7940c-3p 14 20
pma-miR-4629 MIMAT0019663 Petromyzon marinus miR-4629 14 20
hsa-miR-3654 MIMAT0018074 Homo sapiens miR-3654 14 20
mmu-miR-3081-5p MIMAT0014870 Mus musculus miR-3081-5p 14 20
mdv2-miR-M16-5p MIMAT0004455 Mareks disease miR-M16-5p 14 20
ata-miR319-3p MIMAT0037245 Aegilops tauschii miR319-3p 12 80
ssc-miR-378b-3p MIMAT0037082 Sus scrofa miR-378b-3p 12 80
tch-miR-378a-3p MIMAT0036533 Tupaia chinensis miR-378a-3p 12 80
chi-miR-432-3p MIMAT0036228 Capra hircus miR-432-3p 12 80
chi-miR-378-3p MIMAT0036194 Capra hircus miR-378-3p 12 80
efu-miR-9350 MIMAT0035125 Eptesicus fuscus miR-9350 12 80
efu-miR-9230b MIMAT0034834 Eptesicus fuscus miR-9230b 12 80
efu-miR-9189e MIMAT0034769 Eptesicus fuscus miR-9189e 12 80
eca-miR-8908h MIMAT0034710 Equus caballus miR-8908h 12 80
sma-miR-8446-3p MIMAT0033603 Schistosoma mansoni miR-8446-3p 12 80
sma-miR-8425-3p MIMAT0033555 Schistosoma mansoni miR-8425-3p 12 80
str-miR-7880e-5p MIMAT0033319 Strongyloides ratti miR-7880e-5p 12 80
ppc-miR-8300-5p MIMAT0033117 Pristionchus pacificus miR-8300-5p 12 80
ssa-miR-16a-2-3p MIMAT0032407 Salmo salar miR-16a-2-3p 12 80
cpa-miR8148 MIMAT0031845 Carica papaya miR8148 12 80
mmu-miR-7680-5p MIMAT0029874 Mus musculus miR-7680-5p 12 80
mdo-miR-7262b-3p MIMAT0028545 Monodelphis domestica miR-7262b-3p 12 80
mdo-miR-7268-5p MIMAT0028506 Monodelphis domestica miR-7268-5p 12 80
mmu-miR-6961-5p MIMAT0027822 Mus musculus miR-6961-5p 12 80
mmu-miR-6947-5p MIMAT0027794 Mus musculus miR-6947-5p 12 80
gga-miR-6707-5p MIMAT0025817 Gallus gallus miR-6707-5p 12 80
bta-miR-378c MIMAT0025551 Bos taurus miR-378c 12 80
tgu-miR-1756 MIMAT0025404 Taeniopygia guttata miR-1756 12 80
hbr-miR408a MIMAT0025288 Hevea brasiliensis miR408a 12 80
mmu-miR-378c MIMAT0025138 Mus musculus miR-378c 12 80
hvu-miR6179 MIMAT0024802 Hordeum vulgare miR6179 12 80
mml-miR-378j MIMAT0024621 Macaca mulatta miR-378j 12 80
mml-miR-6128 MIMAT0024620 Macaca mulatta miR-6128 12 80
hsa-miR-378j MIMAT0024612 Homo sapiens miR-378j 12 80
hsa-miR-6128 MIMAT0024611 Homo sapiens miR-6128 12 80
ptr-miR-378j MIMAT0024602 Pan troglodytes miR-378j 12 80
ptr-miR-6128 MIMAT0024601 Pan troglodytes miR-6128 12 80
ppy-miR-378e MIMAT0024409 Pongo pygmaeus miR-378e 12 80
ppy-miR-4667 MIMAT0024386 Pongo pygmaeus miR-4667 12 80
ppy-miR-4515 MIMAT0024384 Pongo pygmaeus miR-4515 12 80
ppy-miR-378b MIMAT0024364 Pongo pygmaeus miR-378b 12 80
ppy-miR-378d MIMAT0024360 Pongo pygmaeus miR-378d 12 80
mml-miR-1243-3p MIMAT0024338 Macaca mulatta miR-1243-3p 12 80
mml-miR-378d MIMAT0024313 Macaca mulatta miR-378d 12 80
ggo-miR-378e MIMAT0024303 Gorilla gorilla miR-378e 12 80
ggo-miR-378b MIMAT0024242 Gorilla gorilla miR-378b 12 80
ggo-miR-378a MIMAT0024103 Gorilla gorilla miR-378a 12 80
ptr-miR-378e MIMAT0024067 Pan troglodytes miR-378e 12 80
ptr-miR-378b MIMAT0024044 Pan troglodytes miR-378b 12 80
cgr-miR-378-3p MIMAT0023944 Cricetulus griseus miR-378-3p 12 80
ola-miR-145 MIMAT0022669 Oryzias latipes miR-145 12 80
aca-miR-16b-3p MIMAT0021802 Anolis carolinensis miR-16b-3p 12 80
gma-miR1512b MIMAT0021673 Glycine max miR1512b 12 80
asu-miR-44b-5p MIMAT0021564 Ascaris suum miR-44b-5p 12 80
mmu-miR-5124a MIMAT0020634 Mus musculus miR-5124a 12 80
mmu-miR-5114 MIMAT0020622 Mus musculus miR-5114 12 80
sko-miR-2007-3p MIMAT0020024 Saccoglossus kowalevskii miR-2007-3p 12 80
hsa-miR-4712-5p MIMAT0019818 Homo sapiens miR-4712-5p 12 80
pma-miR-338b MIMAT0019540 Petromyzon marinus miR-338b 12 80
pma-miR-16-3p MIMAT0019382 Petromyzon marinus miR-16-3p 12 80
hsa-miR-378i MIMAT0019074 Homo sapiens miR-378i 12 80
hsa-miR-4515 MIMAT0019052 Homo sapiens miR-4515 12 80
hsa-miR-4463 MIMAT0018987 Homo sapiens miR-4463 12 80
hsa-miR-378h MIMAT0018984 Homo sapiens miR-378h 12 80
hsa-miR-378f MIMAT0018932 Homo sapiens miR-378f 12 80
hsa-miR-378e MIMAT0018927 Homo sapiens miR-378e 12 80
hsa-miR-3925-3p MIMAT0019228 Homo sapiens miR-3925-3p 12 80
hsa-miR-378c MIMAT0016847 Homo sapiens miR-378c 12 80
ppy-miR-1910 MIMAT0016239 Pongo pygmaeus miR-1910 12 80
ppy-miR-770-5p MIMAT0016109 Pongo pygmaeus miR-770-5p 12 80
ppy-miR-422a MIMAT0015881 Pongo pygmaeus miR-422a 12 80
ppy-miR-378a MIMAT0015868 Pongo pygmaeus miR-378a 12 80
bmo-miR-3396 MIMAT0015600 Bombyx mori miR-3396 12 80
hsa-miR-378b MIMAT0014999 Homo sapiens miR-378b 12 80
api-miR-3027 MIMAT0014763 Acyrthosiphon pisum miR-3027 12 80
api-miR-3015a MIMAT0014750 Acyrthosiphon pisum miR-3015a 12 80
rlcv-miR-rL1-29-5p MIMAT0019194 Rhesus lymphocryptovirus miR-rL1... 12 80
ssc-miR-378 MIMAT0013868 Sus scrofa miR-378 12 80
eca-miR-378 MIMAT0013068 Equus caballus miR-378 12 80
cte-miR-2692 MIMAT0013549 Capitella teleta miR-2692 12 80
dsi-miR-978a MIMAT0012424 Drosophila simulans miR-978a 12 80
bta-miR-2339 MIMAT0011873 Bos taurus miR-2339 12 80
bta-miR-2299-5p MIMAT0011807 Bos taurus miR-2299-5p 12 80
bta-miR-378 MIMAT0009305 Bos taurus miR-378 12 80
ptr-miR-770 MIMAT0008322 Pan troglodytes miR-770 12 80
ptr-miR-422a MIMAT0008141 Pan troglodytes miR-422a 12 80
ptr-miR-378a MIMAT0008130 Pan troglodytes miR-378a 12 80
ptr-miR-1825 MIMAT0008051 Pan troglodytes miR-1825 12 80
bmo-miR-184-3p MIMAT0007902 Bombyx mori miR-184-3p 12 80
hsa-miR-1910-5p MIMAT0007884 Homo sapiens miR-1910-5p 12 80
mmu-miR-1905 MIMAT0007866 Mus musculus miR-1905 12 80
cel-miR-1828 MIMAT0006768 Caenorhabditis elegans miR-1828 12 80
hsa-miR-1825 MIMAT0006765 Homo sapiens miR-1825 12 80
cfa-miR-1843 MIMAT0006706 Canis familiaris miR-1843 12 80
cfa-miR-378 MIMAT0006683 Canis familiaris miR-378 12 80
mml-miR-770-5p MIMAT0006514 Macaca mulatta miR-770-5p 12 80
mml-miR-422a MIMAT0006320 Macaca mulatta miR-422a 12 80
mml-miR-378a MIMAT0006307 Macaca mulatta miR-378a 12 80
gga-miR-1756a MIMAT0007663 Gallus gallus miR-1756a 12 80
oan-miR-873-3p MIMAT0007273 Ornithorhynchus anatinus miR-873-3p 12 80
rno-miR-871-3p MIMAT0017289 Rattus norvegicus miR-871-3p 12 80
dme-miR-978-3p MIMAT0005494 Drosophila melanogaster miR-978-3p 12 80
mmu-miR-871-3p MIMAT0017265 Mus musculus miR-871-3p 12 80
sme-miR-750-5p MIMAT0012124 Schmidtea mediterranea miR-750-5p 12 80
hsa-miR-770-5p MIMAT0003948 Homo sapiens miR-770-5p 12 80
hsa-miR-378d MIMAT0018926 Homo sapiens miR-378d 12 80
rno-miR-378a-3p MIMAT0003379 Rattus norvegicus miR-378a-3p 12 80
dre-miR-457b-3p MIMAT0032004 Danio rerio miR-457b-3p 12 80
hsa-miR-422a MIMAT0001339 Homo sapiens miR-422a 12 80
osa-miR319a-3p MIMAT0020915 Oryza sativa miR319a-3p 12 80
mmu-miR-378a-3p MIMAT0003151 Mus musculus miR-378a-3p 12 80
hsa-miR-378a-3p MIMAT0000732 Homo sapiens miR-378a-3p 12 80
rno-miR-336-3p MIMAT0017034 Rattus norvegicus miR-336-3p 12 80
>sly-miR9479-5p MIMAT0035477 Solanum lycopersicum miR9479-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccagtc 7
|||||||
Sbjct: 1 tccagtc 7
>eca-miR-8912 MIMAT0034440 Equus caballus miR-8912
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccagtc 7
|||||||
Sbjct: 2 tccagtc 8
>prd-miR-7940c-3p MIMAT0030537 Panagrellus redivivus
miR-7940c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccagtc 7
|||||||
Sbjct: 8 tccagtc 2
>pma-miR-4629 MIMAT0019663 Petromyzon marinus miR-4629
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccagtc 7
|||||||
Sbjct: 8 tccagtc 2
>hsa-miR-3654 MIMAT0018074 Homo sapiens miR-3654
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccagtc 7
|||||||
Sbjct: 7 tccagtc 1
>mmu-miR-3081-5p MIMAT0014870 Mus musculus miR-3081-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccagtc 7
|||||||
Sbjct: 7 tccagtc 1
>mdv2-miR-M16-5p MIMAT0004455 Mareks disease miR-M16-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccagtc 7
|||||||
Sbjct: 2 tccagtc 8
>ata-miR319-3p MIMAT0037245 Aegilops tauschii miR319-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ssc-miR-378b-3p MIMAT0037082 Sus scrofa miR-378b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>tch-miR-378a-3p MIMAT0036533 Tupaia chinensis miR-378a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>chi-miR-432-3p MIMAT0036228 Capra hircus miR-432-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>chi-miR-378-3p MIMAT0036194 Capra hircus miR-378-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>efu-miR-9350 MIMAT0035125 Eptesicus fuscus miR-9350
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccagtc 7
||||||
Sbjct: 1 ccagtc 6
>efu-miR-9230b MIMAT0034834 Eptesicus fuscus miR-9230b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>efu-miR-9189e MIMAT0034769 Eptesicus fuscus miR-9189e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccagtc 7
||||||
Sbjct: 7 ccagtc 2
>eca-miR-8908h MIMAT0034710 Equus caballus miR-8908h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 3 tccagt 8
>sma-miR-8446-3p MIMAT0033603 Schistosoma mansoni miR-8446-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>sma-miR-8425-3p MIMAT0033555 Schistosoma mansoni miR-8425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccagtc 7
||||||
Sbjct: 8 ccagtc 3
>str-miR-7880e-5p MIMAT0033319 Strongyloides ratti miR-7880e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccagtc 7
||||||
Sbjct: 8 ccagtc 3
>ppc-miR-8300-5p MIMAT0033117 Pristionchus pacificus miR-8300-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>ssa-miR-16a-2-3p MIMAT0032407 Salmo salar miR-16a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>cpa-miR8148 MIMAT0031845 Carica papaya miR8148
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccagtc 7
||||||
Sbjct: 7 ccagtc 2
>mmu-miR-7680-5p MIMAT0029874 Mus musculus miR-7680-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 3 tccagt 8
>mdo-miR-7262b-3p MIMAT0028545 Monodelphis domestica
miR-7262b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 8 tccagt 3
>mdo-miR-7268-5p MIMAT0028506 Monodelphis domestica miR-7268-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 8 tccagt 3
>mmu-miR-6961-5p MIMAT0027822 Mus musculus miR-6961-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccagtc 7
||||||
Sbjct: 7 ccagtc 2
>mmu-miR-6947-5p MIMAT0027794 Mus musculus miR-6947-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 3 tccagt 8
>gga-miR-6707-5p MIMAT0025817 Gallus gallus miR-6707-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>bta-miR-378c MIMAT0025551 Bos taurus miR-378c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>tgu-miR-1756 MIMAT0025404 Taeniopygia guttata miR-1756
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>hbr-miR408a MIMAT0025288 Hevea brasiliensis miR408a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccagtc 7
||||||
Sbjct: 8 ccagtc 3
>mmu-miR-378c MIMAT0025138 Mus musculus miR-378c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>hvu-miR6179 MIMAT0024802 Hordeum vulgare miR6179
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccagtc 7
||||||
Sbjct: 3 ccagtc 8
>mml-miR-378j MIMAT0024621 Macaca mulatta miR-378j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>mml-miR-6128 MIMAT0024620 Macaca mulatta miR-6128
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>hsa-miR-378j MIMAT0024612 Homo sapiens miR-378j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>hsa-miR-6128 MIMAT0024611 Homo sapiens miR-6128
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ptr-miR-378j MIMAT0024602 Pan troglodytes miR-378j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ptr-miR-6128 MIMAT0024601 Pan troglodytes miR-6128
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ppy-miR-378e MIMAT0024409 Pongo pygmaeus miR-378e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ppy-miR-4667 MIMAT0024386 Pongo pygmaeus miR-4667
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccagtc 7
||||||
Sbjct: 7 ccagtc 2
>ppy-miR-4515 MIMAT0024384 Pongo pygmaeus miR-4515
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccagtc 7
||||||
Sbjct: 8 ccagtc 3
>ppy-miR-378b MIMAT0024364 Pongo pygmaeus miR-378b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ppy-miR-378d MIMAT0024360 Pongo pygmaeus miR-378d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>mml-miR-1243-3p MIMAT0024338 Macaca mulatta miR-1243-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 8 tccagt 3
>mml-miR-378d MIMAT0024313 Macaca mulatta miR-378d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ggo-miR-378e MIMAT0024303 Gorilla gorilla miR-378e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ggo-miR-378b MIMAT0024242 Gorilla gorilla miR-378b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ggo-miR-378a MIMAT0024103 Gorilla gorilla miR-378a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ptr-miR-378e MIMAT0024067 Pan troglodytes miR-378e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ptr-miR-378b MIMAT0024044 Pan troglodytes miR-378b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>cgr-miR-378-3p MIMAT0023944 Cricetulus griseus miR-378-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ola-miR-145 MIMAT0022669 Oryzias latipes miR-145
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>aca-miR-16b-3p MIMAT0021802 Anolis carolinensis miR-16b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>gma-miR1512b MIMAT0021673 Glycine max miR1512b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 8 tccagt 3
>asu-miR-44b-5p MIMAT0021564 Ascaris suum miR-44b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>mmu-miR-5124a MIMAT0020634 Mus musculus miR-5124a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 3 tccagt 8
>mmu-miR-5114 MIMAT0020622 Mus musculus miR-5114
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>sko-miR-2007-3p MIMAT0020024 Saccoglossus kowalevskii
miR-2007-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>hsa-miR-4712-5p MIMAT0019818 Homo sapiens miR-4712-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>pma-miR-338b MIMAT0019540 Petromyzon marinus miR-338b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>pma-miR-16-3p MIMAT0019382 Petromyzon marinus miR-16-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>hsa-miR-378i MIMAT0019074 Homo sapiens miR-378i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>hsa-miR-4515 MIMAT0019052 Homo sapiens miR-4515
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccagtc 7
||||||
Sbjct: 8 ccagtc 3
>hsa-miR-4463 MIMAT0018987 Homo sapiens miR-4463
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccagtc 7
||||||
Sbjct: 8 ccagtc 3
>hsa-miR-378h MIMAT0018984 Homo sapiens miR-378h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>hsa-miR-378f MIMAT0018932 Homo sapiens miR-378f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>hsa-miR-378e MIMAT0018927 Homo sapiens miR-378e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>hsa-miR-3925-3p MIMAT0019228 Homo sapiens miR-3925-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 3 tccagt 8
>hsa-miR-378c MIMAT0016847 Homo sapiens miR-378c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ppy-miR-1910 MIMAT0016239 Pongo pygmaeus miR-1910
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccagtc 7
||||||
Sbjct: 1 ccagtc 6
>ppy-miR-770-5p MIMAT0016109 Pongo pygmaeus miR-770-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>ppy-miR-422a MIMAT0015881 Pongo pygmaeus miR-422a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ppy-miR-378a MIMAT0015868 Pongo pygmaeus miR-378a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>bmo-miR-3396 MIMAT0015600 Bombyx mori miR-3396
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>hsa-miR-378b MIMAT0014999 Homo sapiens miR-378b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>api-miR-3027 MIMAT0014763 Acyrthosiphon pisum miR-3027
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccagtc 7
||||||
Sbjct: 1 ccagtc 6
>api-miR-3015a MIMAT0014750 Acyrthosiphon pisum miR-3015a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 8 tccagt 3
>rlcv-miR-rL1-29-5p MIMAT0019194 Rhesus lymphocryptovirus
miR-rL1-29-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccagtc 7
||||||
Sbjct: 1 ccagtc 6
>ssc-miR-378 MIMAT0013868 Sus scrofa miR-378
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>eca-miR-378 MIMAT0013068 Equus caballus miR-378
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>cte-miR-2692 MIMAT0013549 Capitella teleta miR-2692
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccagtc 7
||||||
Sbjct: 1 ccagtc 6
>dsi-miR-978a MIMAT0012424 Drosophila simulans miR-978a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 3 tccagt 8
>bta-miR-2339 MIMAT0011873 Bos taurus miR-2339
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 8 tccagt 3
>bta-miR-2299-5p MIMAT0011807 Bos taurus miR-2299-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>bta-miR-378 MIMAT0009305 Bos taurus miR-378
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ptr-miR-770 MIMAT0008322 Pan troglodytes miR-770
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>ptr-miR-422a MIMAT0008141 Pan troglodytes miR-422a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ptr-miR-378a MIMAT0008130 Pan troglodytes miR-378a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>ptr-miR-1825 MIMAT0008051 Pan troglodytes miR-1825
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>bmo-miR-184-3p MIMAT0007902 Bombyx mori miR-184-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>hsa-miR-1910-5p MIMAT0007884 Homo sapiens miR-1910-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccagtc 7
||||||
Sbjct: 1 ccagtc 6
>mmu-miR-1905 MIMAT0007866 Mus musculus miR-1905
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccagtc 7
||||||
Sbjct: 3 ccagtc 8
>cel-miR-1828 MIMAT0006768 Caenorhabditis elegans miR-1828
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>hsa-miR-1825 MIMAT0006765 Homo sapiens miR-1825
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>cfa-miR-1843 MIMAT0006706 Canis familiaris miR-1843
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>cfa-miR-378 MIMAT0006683 Canis familiaris miR-378
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>mml-miR-770-5p MIMAT0006514 Macaca mulatta miR-770-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>mml-miR-422a MIMAT0006320 Macaca mulatta miR-422a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>mml-miR-378a MIMAT0006307 Macaca mulatta miR-378a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>gga-miR-1756a MIMAT0007663 Gallus gallus miR-1756a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>oan-miR-873-3p MIMAT0007273 Ornithorhynchus anatinus miR-873-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccagtc 7
||||||
Sbjct: 8 ccagtc 3
>rno-miR-871-3p MIMAT0017289 Rattus norvegicus miR-871-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccagtc 7
||||||
Sbjct: 7 ccagtc 2
>dme-miR-978-3p MIMAT0005494 Drosophila melanogaster miR-978-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 3 tccagt 8
>mmu-miR-871-3p MIMAT0017265 Mus musculus miR-871-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccagtc 7
||||||
Sbjct: 7 ccagtc 2
>sme-miR-750-5p MIMAT0012124 Schmidtea mediterranea miR-750-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 8 tccagt 3
>hsa-miR-770-5p MIMAT0003948 Homo sapiens miR-770-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>hsa-miR-378d MIMAT0018926 Homo sapiens miR-378d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>rno-miR-378a-3p MIMAT0003379 Rattus norvegicus miR-378a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>dre-miR-457b-3p MIMAT0032004 Danio rerio miR-457b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccagt 6
||||||
Sbjct: 1 tccagt 6
>hsa-miR-422a MIMAT0001339 Homo sapiens miR-422a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>osa-miR319a-3p MIMAT0020915 Oryza sativa miR319a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>mmu-miR-378a-3p MIMAT0003151 Mus musculus miR-378a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>hsa-miR-378a-3p MIMAT0000732 Homo sapiens miR-378a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
>rno-miR-336-3p MIMAT0017034 Rattus norvegicus miR-336-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccagt 6
||||||
Sbjct: 6 tccagt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 157
Number of extensions: 150
Number of successful extensions: 115
Number of sequences better than 100.0: 115
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 115
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
