BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d21-3p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

eca-miR-9155 MIMAT0034731 Equus caballus miR-9155                      14      20
ppc-miR-8288-5p MIMAT0033085 Pristionchus pacificus miR-8288-5p        14      20
dev-miR-D21-3p MIMAT0028197 Duck enteritis miR-D21-3p                  14      20
hsa-miR-5581-3p MIMAT0022276 Homo sapiens miR-5581-3p                  14      20
mdv1-miR-M13 MIMAT0005985 Mareks disease miR-M13                       14      20
bra-miR6032-5p MIMAT0035862 Brassica rapa miR6032-5p                   12      80
efu-miR-9243a MIMAT0034858 Eptesicus fuscus miR-9243a                  12      80
eca-miR-8960 MIMAT0034494 Equus caballus miR-8960                      12      80
cfa-miR-8877 MIMAT0034377 Canis familiaris miR-8877                    12      80
esi-miR8623b MIMAT0033972 Ectocarpus siliculosus miR8623b              12      80
sma-miR-8469-5p MIMAT0033657 Schistosoma mansoni miR-8469-5p           12      80
ppc-miR-8360-3p MIMAT0033283 Pristionchus pacificus miR-8360-3p        12      80
ssa-miR-146d-3p MIMAT0032377 Salmo salar miR-146d-3p                   12      80
mdo-miR-7301-3p MIMAT0029915 Monodelphis domestica miR-7301-3p         12      80
ipu-miR-7575 MIMAT0029574 Ictalurus punctatus miR-7575                 12      80
gga-miR-7483-5p MIMAT0029120 Gallus gallus miR-7483-5p                 12      80
mdo-miR-7386m-5p MIMAT0028862 Monodelphis domestica miR-7386m-5p       12      80
mmu-miR-7232-5p MIMAT0028432 Mus musculus miR-7232-5p                  12      80
gga-miR-6658-3p MIMAT0025759 Gallus gallus miR-6658-3p                 12      80
ptc-miR6425d-3p MIMAT0025215 Populus trichocarpa miR6425d-3p           12      80
ptc-miR6425c-3p MIMAT0025208 Populus trichocarpa miR6425c-3p           12      80
ptc-miR6425b-3p MIMAT0025199 Populus trichocarpa miR6425b-3p           12      80
ptc-miR6425a-3p MIMAT0025191 Populus trichocarpa miR6425a-3p           12      80
gma-miR5671a MIMAT0022453 Glycine max miR5671a                         12      80
ath-miR5020c MIMAT0022391 Arabidopsis thaliana miR5020c                12      80
mtr-miR5208c MIMAT0021141 Medicago truncatula miR5208c                 12      80
mtr-miR5208b MIMAT0021140 Medicago truncatula miR5208b                 12      80
mtr-miR5208a MIMAT0021139 Medicago truncatula miR5208a                 12      80
hsa-miR-5011-3p MIMAT0021046 Homo sapiens miR-5011-3p                  12      80
hsa-miR-4802-3p MIMAT0019982 Homo sapiens miR-4802-3p                  12      80
hsa-miR-4716-5p MIMAT0019826 Homo sapiens miR-4716-5p                  12      80
ngi-miR-281 MIMAT0018388 Nasonia giraulti miR-281                      12      80
hsa-miR-3622b-5p MIMAT0018005 Homo sapiens miR-3622b-5p                12      80
bmo-miR-3375-5p MIMAT0015565 Bombyx mori miR-3375-5p                   12      80
bmo-miR-3324 MIMAT0015511 Bombyx mori miR-3324                         12      80
tgu-miR-146a-3p MIMAT0014465 Taeniopygia guttata miR-146a-3p           12      80
aqu-miR-2021-5p MIMAT0009753 Amphimedon queenslandica miR-2021-5p      12      80
dvi-miR-1-5p MIMAT0032082 Drosophila virilis miR-1-5p                  12      80
gga-miR-146c-3p MIMAT0007736 Gallus gallus miR-146c-3p                 12      80
gga-miR-1626-5p MIMAT0007495 Gallus gallus miR-1626-5p                 12      80
mmu-miR-669h-5p MIMAT0005841 Mus musculus miR-669h-5p                  12      80
ppt-miR538c MIMAT0003149 Physcomitrella patens miR538c                 12      80
ppt-miR538b MIMAT0003148 Physcomitrella patens miR538b                 12      80
ppt-miR538a MIMAT0003147 Physcomitrella patens miR538a                 12      80
dme-miR-1-5p MIMAT0020779 Drosophila melanogaster miR-1-5p             12      80
cel-miR-51-3p MIMAT0015099 Caenorhabditis elegans miR-51-3p            12      80
>eca-miR-9155 MIMAT0034731 Equus caballus miR-9155
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tccatgc 7
         |||||||
Sbjct: 1 tccatgc 7
>ppc-miR-8288-5p MIMAT0033085 Pristionchus pacificus miR-8288-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tccatgc 7
         |||||||
Sbjct: 7 tccatgc 1
>dev-miR-D21-3p MIMAT0028197 Duck enteritis miR-D21-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tccatgc 7
         |||||||
Sbjct: 2 tccatgc 8
>hsa-miR-5581-3p MIMAT0022276 Homo sapiens miR-5581-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tccatgc 7
         |||||||
Sbjct: 2 tccatgc 8
>mdv1-miR-M13 MIMAT0005985 Mareks disease miR-M13
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tccatgc 7
         |||||||
Sbjct: 7 tccatgc 1
>bra-miR6032-5p MIMAT0035862 Brassica rapa miR6032-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 8 tccatg 3
>efu-miR-9243a MIMAT0034858 Eptesicus fuscus miR-9243a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 3 tccatg 8
>eca-miR-8960 MIMAT0034494 Equus caballus miR-8960
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ccatgc 7
         ||||||
Sbjct: 1 ccatgc 6
>cfa-miR-8877 MIMAT0034377 Canis familiaris miR-8877
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ccatgc 7
         ||||||
Sbjct: 1 ccatgc 6
>esi-miR8623b MIMAT0033972 Ectocarpus siliculosus miR8623b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 6 tccatg 1
>sma-miR-8469-5p MIMAT0033657 Schistosoma mansoni miR-8469-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccatgc 7
         ||||||
Sbjct: 7 ccatgc 2
>ppc-miR-8360-3p MIMAT0033283 Pristionchus pacificus miR-8360-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 3 tccatg 8
>ssa-miR-146d-3p MIMAT0032377 Salmo salar miR-146d-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 8 tccatg 3
>mdo-miR-7301-3p MIMAT0029915 Monodelphis domestica miR-7301-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ccatgc 7
         ||||||
Sbjct: 1 ccatgc 6
>ipu-miR-7575 MIMAT0029574 Ictalurus punctatus miR-7575
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccatgc 7
         ||||||
Sbjct: 6 ccatgc 1
>gga-miR-7483-5p MIMAT0029120 Gallus gallus miR-7483-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccatgc 7
         ||||||
Sbjct: 6 ccatgc 1
>mdo-miR-7386m-5p MIMAT0028862 Monodelphis domestica
         miR-7386m-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 6 tccatg 1
>mmu-miR-7232-5p MIMAT0028432 Mus musculus miR-7232-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 8 tccatg 3
>gga-miR-6658-3p MIMAT0025759 Gallus gallus miR-6658-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 6 tccatg 1
>ptc-miR6425d-3p MIMAT0025215 Populus trichocarpa miR6425d-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 1 tccatg 6

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 8 tccatg 3
>ptc-miR6425c-3p MIMAT0025208 Populus trichocarpa miR6425c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 1 tccatg 6

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 8 tccatg 3
>ptc-miR6425b-3p MIMAT0025199 Populus trichocarpa miR6425b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 1 tccatg 6

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 8 tccatg 3
>ptc-miR6425a-3p MIMAT0025191 Populus trichocarpa miR6425a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 1 tccatg 6

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 8 tccatg 3
>gma-miR5671a MIMAT0022453 Glycine max miR5671a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 6 tccatg 1
>ath-miR5020c MIMAT0022391 Arabidopsis thaliana miR5020c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccatgc 7
         ||||||
Sbjct: 8 ccatgc 3
>mtr-miR5208c MIMAT0021141 Medicago truncatula miR5208c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 8 tccatg 3
>mtr-miR5208b MIMAT0021140 Medicago truncatula miR5208b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 8 tccatg 3
>mtr-miR5208a MIMAT0021139 Medicago truncatula miR5208a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 8 tccatg 3
>hsa-miR-5011-3p MIMAT0021046 Homo sapiens miR-5011-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccatgc 7
         ||||||
Sbjct: 8 ccatgc 3
>hsa-miR-4802-3p MIMAT0019982 Homo sapiens miR-4802-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 8 tccatg 3
>hsa-miR-4716-5p MIMAT0019826 Homo sapiens miR-4716-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 1 tccatg 6
>ngi-miR-281 MIMAT0018388 Nasonia giraulti miR-281
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 8 tccatg 3
>hsa-miR-3622b-5p MIMAT0018005 Homo sapiens miR-3622b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccatgc 7
         ||||||
Sbjct: 8 ccatgc 3
>bmo-miR-3375-5p MIMAT0015565 Bombyx mori miR-3375-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 1 tccatg 6
>bmo-miR-3324 MIMAT0015511 Bombyx mori miR-3324
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 1 tccatg 6
>tgu-miR-146a-3p MIMAT0014465 Taeniopygia guttata miR-146a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 3 tccatg 8
>aqu-miR-2021-5p MIMAT0009753 Amphimedon queenslandica
         miR-2021-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 6 tccatg 1
>dvi-miR-1-5p MIMAT0032082 Drosophila virilis miR-1-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ccatgc 7
         ||||||
Sbjct: 1 ccatgc 6
>gga-miR-146c-3p MIMAT0007736 Gallus gallus miR-146c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 3 tccatg 8
>gga-miR-1626-5p MIMAT0007495 Gallus gallus miR-1626-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 3 tccatg 8
>mmu-miR-669h-5p MIMAT0005841 Mus musculus miR-669h-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccatgc 7
         ||||||
Sbjct: 8 ccatgc 3
>ppt-miR538c MIMAT0003149 Physcomitrella patens miR538c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccatgc 7
         ||||||
Sbjct: 8 ccatgc 3
>ppt-miR538b MIMAT0003148 Physcomitrella patens miR538b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccatgc 7
         ||||||
Sbjct: 8 ccatgc 3
>ppt-miR538a MIMAT0003147 Physcomitrella patens miR538a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccatgc 7
         ||||||
Sbjct: 8 ccatgc 3
>dme-miR-1-5p MIMAT0020779 Drosophila melanogaster miR-1-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ccatgc 7
         ||||||
Sbjct: 1 ccatgc 6
>cel-miR-51-3p MIMAT0015099 Caenorhabditis elegans miR-51-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccatg 6
         ||||||
Sbjct: 6 tccatg 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 85
Number of extensions: 80
Number of successful extensions: 50
Number of sequences better than 100.0: 46
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 50
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)