BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-9-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9224 MIMAT0034826 Eptesicus fuscus miR-9224 14 20
ssc-miR-7137-5p MIMAT0028149 Sus scrofa miR-7137-5p 14 20
pma-miR-4590 MIMAT0019623 Petromyzon marinus miR-4590 14 20
bmo-miR-2724 MIMAT0012600 Bombyx mori miR-2724 14 20
oha-miR-30b-3p MIMAT0036891 Ophiophagus hannah miR-30b-3p 12 80
chi-miR-361-3p MIMAT0036172 Capra hircus miR-361-3p 12 80
bhv5-miR-B14 MIMAT0035711 Bovine herpesvirus miR-B14 12 80
efu-miR-9208 MIMAT0034798 Eptesicus fuscus miR-9208 12 80
efu-miR-9200b MIMAT0034786 Eptesicus fuscus miR-9200b 12 80
efu-miR-9194 MIMAT0034774 Eptesicus fuscus miR-9194 12 80
prd-miR-7911b-5p MIMAT0030648 Panagrellus redivivus miR-7911b-5p 12 80
prd-miR-7911a-5p MIMAT0030646 Panagrellus redivivus miR-7911a-5p 12 80
lja-miR7520 MIMAT0029335 Lotus japonicus miR7520 12 80
mdo-miR-7364-5p MIMAT0028740 Monodelphis domestica miR-7364-5p 12 80
mml-miR-7200-5p MIMAT0028364 Macaca mulatta miR-7200-5p 12 80
mml-miR-6794-5p MIMAT0028294 Macaca mulatta miR-6794-5p 12 80
mmu-miR-7119-5p MIMAT0028135 Mus musculus miR-7119-5p 12 80
mmu-miR-7115-5p MIMAT0028127 Mus musculus miR-7115-5p 12 80
mmu-miR-7045-3p MIMAT0027995 Mus musculus miR-7045-3p 12 80
mmu-miR-7024-5p MIMAT0027952 Mus musculus miR-7024-5p 12 80
mmu-miR-7023-5p MIMAT0027950 Mus musculus miR-7023-5p 12 80
mmu-miR-6941-5p MIMAT0027782 Mus musculus miR-6941-5p 12 80
hsa-miR-6887-5p MIMAT0027674 Homo sapiens miR-6887-5p 12 80
hsa-miR-6795-5p MIMAT0027490 Homo sapiens miR-6795-5p 12 80
hsa-miR-6794-5p MIMAT0027488 Homo sapiens miR-6794-5p 12 80
bta-miR-6535 MIMAT0025571 Bos taurus miR-6535 12 80
mml-miR-4716 MIMAT0024337 Macaca mulatta miR-4716 12 80
mtr-miR5266 MIMAT0021275 Medicago truncatula miR5266 12 80
hsa-miR-4716-3p MIMAT0019827 Homo sapiens miR-4716-3p 12 80
hsa-miR-4665-5p MIMAT0019739 Homo sapiens miR-4665-5p 12 80
hsa-miR-3679-3p MIMAT0018105 Homo sapiens miR-3679-3p 12 80
hsa-miR-4271 MIMAT0016901 Homo sapiens miR-4271 12 80
ppy-miR-1275 MIMAT0016199 Pongo pygmaeus miR-1275 12 80
ppy-miR-361-3p MIMAT0015849 Pongo pygmaeus miR-361-3p 12 80
eca-miR-361-3p MIMAT0013209 Equus caballus miR-361-3p 12 80
bta-miR-2305 MIMAT0011817 Bos taurus miR-2305 12 80
ptr-miR-361 MIMAT0008115 Pan troglodytes miR-361 12 80
ptr-miR-1275 MIMAT0007996 Pan troglodytes miR-1275 12 80
mmu-miR-1895 MIMAT0007867 Mus musculus miR-1895 12 80
mml-miR-361-3p MIMAT0006287 Macaca mulatta miR-361-3p 12 80
hsa-miR-1275 MIMAT0005929 Homo sapiens miR-1275 12 80
hsa-miR-1237-5p MIMAT0022946 Homo sapiens miR-1237-5p 12 80
mmu-miR-361-3p MIMAT0017075 Mus musculus miR-361-3p 12 80
hsa-miR-361-3p MIMAT0004682 Homo sapiens miR-361-3p 12 80
>efu-miR-9224 MIMAT0034826 Eptesicus fuscus miR-9224
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcccccg 7
|||||||
Sbjct: 1 tcccccg 7
>ssc-miR-7137-5p MIMAT0028149 Sus scrofa miR-7137-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcccccg 7
|||||||
Sbjct: 7 tcccccg 1
>pma-miR-4590 MIMAT0019623 Petromyzon marinus miR-4590
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcccccg 7
|||||||
Sbjct: 8 tcccccg 2
>bmo-miR-2724 MIMAT0012600 Bombyx mori miR-2724
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcccccg 7
|||||||
Sbjct: 1 tcccccg 7
>oha-miR-30b-3p MIMAT0036891 Ophiophagus hannah miR-30b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>chi-miR-361-3p MIMAT0036172 Capra hircus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>bhv5-miR-B14 MIMAT0035711 Bovine herpesvirus miR-B14
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccccg 7
||||||
Sbjct: 6 cccccg 1
>efu-miR-9208 MIMAT0034798 Eptesicus fuscus miR-9208
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccccg 7
||||||
Sbjct: 3 cccccg 8
>efu-miR-9200b MIMAT0034786 Eptesicus fuscus miR-9200b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccccg 7
||||||
Sbjct: 8 cccccg 3
>efu-miR-9194 MIMAT0034774 Eptesicus fuscus miR-9194
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>prd-miR-7911b-5p MIMAT0030648 Panagrellus redivivus
miR-7911b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccccg 7
||||||
Sbjct: 3 cccccg 8
>prd-miR-7911a-5p MIMAT0030646 Panagrellus redivivus
miR-7911a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccccg 7
||||||
Sbjct: 3 cccccg 8
>lja-miR7520 MIMAT0029335 Lotus japonicus miR7520
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>mdo-miR-7364-5p MIMAT0028740 Monodelphis domestica miR-7364-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>mml-miR-7200-5p MIMAT0028364 Macaca mulatta miR-7200-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>mml-miR-6794-5p MIMAT0028294 Macaca mulatta miR-6794-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>mmu-miR-7119-5p MIMAT0028135 Mus musculus miR-7119-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>mmu-miR-7115-5p MIMAT0028127 Mus musculus miR-7115-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccccg 7
||||||
Sbjct: 7 cccccg 2
>mmu-miR-7045-3p MIMAT0027995 Mus musculus miR-7045-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 3 tccccc 8
>mmu-miR-7024-5p MIMAT0027952 Mus musculus miR-7024-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>mmu-miR-7023-5p MIMAT0027950 Mus musculus miR-7023-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>mmu-miR-6941-5p MIMAT0027782 Mus musculus miR-6941-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>hsa-miR-6887-5p MIMAT0027674 Homo sapiens miR-6887-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>hsa-miR-6795-5p MIMAT0027490 Homo sapiens miR-6795-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>hsa-miR-6794-5p MIMAT0027488 Homo sapiens miR-6794-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>bta-miR-6535 MIMAT0025571 Bos taurus miR-6535
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>mml-miR-4716 MIMAT0024337 Macaca mulatta miR-4716
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>mtr-miR5266 MIMAT0021275 Medicago truncatula miR5266
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>hsa-miR-4716-3p MIMAT0019827 Homo sapiens miR-4716-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>hsa-miR-4665-5p MIMAT0019739 Homo sapiens miR-4665-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>hsa-miR-3679-3p MIMAT0018105 Homo sapiens miR-3679-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 3 tccccc 8
>hsa-miR-4271 MIMAT0016901 Homo sapiens miR-4271
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 6 tccccc 1
>ppy-miR-1275 MIMAT0016199 Pongo pygmaeus miR-1275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>ppy-miR-361-3p MIMAT0015849 Pongo pygmaeus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>eca-miR-361-3p MIMAT0013209 Equus caballus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>bta-miR-2305 MIMAT0011817 Bos taurus miR-2305
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccccg 7
||||||
Sbjct: 6 cccccg 1
>ptr-miR-361 MIMAT0008115 Pan troglodytes miR-361
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>ptr-miR-1275 MIMAT0007996 Pan troglodytes miR-1275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>mmu-miR-1895 MIMAT0007867 Mus musculus miR-1895
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccccg 7
||||||
Sbjct: 1 cccccg 6
>mml-miR-361-3p MIMAT0006287 Macaca mulatta miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>hsa-miR-1275 MIMAT0005929 Homo sapiens miR-1275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>hsa-miR-1237-5p MIMAT0022946 Homo sapiens miR-1237-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccccg 7
||||||
Sbjct: 6 cccccg 1
>mmu-miR-361-3p MIMAT0017075 Mus musculus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>hsa-miR-361-3p MIMAT0004682 Homo sapiens miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 69
Number of extensions: 65
Number of successful extensions: 44
Number of sequences better than 100.0: 44
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 44
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
