BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= blv-miR-b3-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
lja-miR7520 MIMAT0029335 Lotus japonicus miR7520 14 20
mml-miR-6794-5p MIMAT0028294 Macaca mulatta miR-6794-5p 14 20
hsa-miR-6794-5p MIMAT0027488 Homo sapiens miR-6794-5p 14 20
blv-miR-B3-5p MIMAT0025862 Bovine leukemia miR-B3-5p 14 20
bta-miR-6535 MIMAT0025571 Bos taurus miR-6535 14 20
mja-miR-6493-3p MIMAT0025302 Marsupenaeus japonicus miR-6493-3p 14 20
mml-miR-4716 MIMAT0024337 Macaca mulatta miR-4716 14 20
mtr-miR5276 MIMAT0021314 Medicago truncatula miR5276 14 20
hsa-miR-5010-5p MIMAT0021043 Homo sapiens miR-5010-5p 14 20
hsa-miR-4716-3p MIMAT0019827 Homo sapiens miR-4716-3p 14 20
hsa-miR-625-5p MIMAT0003294 Homo sapiens miR-625-5p 14 20
ata-miR9772b-3p MIMAT0037155 Aegilops tauschii miR9772b-3p 12 80
ata-miR9772a-3p MIMAT0037107 Aegilops tauschii miR9772a-3p 12 80
oha-miR-30b-3p MIMAT0036891 Ophiophagus hannah miR-30b-3p 12 80
chi-miR-361-3p MIMAT0036172 Capra hircus miR-361-3p 12 80
efu-miR-9224 MIMAT0034826 Eptesicus fuscus miR-9224 12 80
efu-miR-9194 MIMAT0034774 Eptesicus fuscus miR-9194 12 80
ppc-miR-8225-3p MIMAT0032893 Pristionchus pacificus miR-8225-3p 12 80
stu-miR384-3p MIMAT0031374 Solanum tuberosum miR384-3p 12 80
mdo-miR-7364-5p MIMAT0028740 Monodelphis domestica miR-7364-5p 12 80
mml-miR-7200-5p MIMAT0028364 Macaca mulatta miR-7200-5p 12 80
mml-miR-7195-5p MIMAT0028350 Macaca mulatta miR-7195-5p 12 80
mmu-miR-7119-5p MIMAT0028135 Mus musculus miR-7119-5p 12 80
mmu-miR-7082-3p MIMAT0028071 Mus musculus miR-7082-3p 12 80
mmu-miR-7045-3p MIMAT0027995 Mus musculus miR-7045-3p 12 80
mmu-miR-7024-5p MIMAT0027952 Mus musculus miR-7024-5p 12 80
mmu-miR-7023-5p MIMAT0027950 Mus musculus miR-7023-5p 12 80
mmu-miR-6968-5p MIMAT0027838 Mus musculus miR-6968-5p 12 80
mmu-miR-6941-5p MIMAT0027782 Mus musculus miR-6941-5p 12 80
hsa-miR-6887-5p MIMAT0027674 Homo sapiens miR-6887-5p 12 80
hsa-miR-6885-5p MIMAT0027670 Homo sapiens miR-6885-5p 12 80
hsa-miR-6835-5p MIMAT0027570 Homo sapiens miR-6835-5p 12 80
hsa-miR-6805-5p MIMAT0027510 Homo sapiens miR-6805-5p 12 80
hsa-miR-6798-5p MIMAT0027496 Homo sapiens miR-6798-5p 12 80
hsa-miR-6795-5p MIMAT0027490 Homo sapiens miR-6795-5p 12 80
hsa-miR-6732-5p MIMAT0027365 Homo sapiens miR-6732-5p 12 80
rno-miR-3072 MIMAT0025071 Rattus norvegicus miR-3072 12 80
ggo-miR-4488 MIMAT0024152 Gorilla gorilla miR-4488 12 80
cgr-miR-3072-3p MIMAT0023893 Cricetulus griseus miR-3072-3p 12 80
mtr-miR5266 MIMAT0021275 Medicago truncatula miR5266 12 80
hsa-miR-4697-5p MIMAT0019791 Homo sapiens miR-4697-5p 12 80
hsa-miR-4665-5p MIMAT0019739 Homo sapiens miR-4665-5p 12 80
hsa-miR-4640-3p MIMAT0019700 Homo sapiens miR-4640-3p 12 80
pma-miR-4619 MIMAT0019653 Petromyzon marinus miR-4619 12 80
pma-miR-4590 MIMAT0019623 Petromyzon marinus miR-4590 12 80
hsa-miR-4488 MIMAT0019022 Homo sapiens miR-4488 12 80
tca-miR-3840-5p MIMAT0018724 Tribolium castaneum miR-3840-5p 12 80
hsa-miR-3679-3p MIMAT0018105 Homo sapiens miR-3679-3p 12 80
hsa-miR-4278 MIMAT0016910 Homo sapiens miR-4278 12 80
hsa-miR-4271 MIMAT0016901 Homo sapiens miR-4271 12 80
hsa-miR-4313 MIMAT0016865 Homo sapiens miR-4313 12 80
ppy-miR-1275 MIMAT0016199 Pongo pygmaeus miR-1275 12 80
ppy-miR-361-3p MIMAT0015849 Pongo pygmaeus miR-361-3p 12 80
mmu-miR-3104-5p MIMAT0014939 Mus musculus miR-3104-5p 12 80
mmu-miR-3072-3p MIMAT0014853 Mus musculus miR-3072-3p 12 80
eca-miR-361-3p MIMAT0013209 Equus caballus miR-361-3p 12 80
bmo-miR-2724 MIMAT0012600 Bombyx mori miR-2724 12 80
bta-miR-2327 MIMAT0011856 Bos taurus miR-2327 12 80
bta-miR-2326 MIMAT0011855 Bos taurus miR-2326 12 80
ptr-miR-361 MIMAT0008115 Pan troglodytes miR-361 12 80
ptr-miR-1275 MIMAT0007996 Pan troglodytes miR-1275 12 80
mml-miR-361-3p MIMAT0006287 Macaca mulatta miR-361-3p 12 80
gga-miR-1606 MIMAT0007472 Gallus gallus miR-1606 12 80
oan-miR-1421p-5p MIMAT0007078 Ornithorhynchus anatinus miR-1421p-5p 12 80
oan-miR-1421g-5p MIMAT0006975 Ornithorhynchus anatinus miR-1421g-5p 12 80
hsa-miR-1275 MIMAT0005929 Homo sapiens miR-1275 12 80
mghv-miR-M1-2-5p MIMAT0017186 Mouse gammaherpesvirus miR-M1-2-5p 12 80
mmu-miR-361-3p MIMAT0017075 Mus musculus miR-361-3p 12 80
hsa-miR-361-3p MIMAT0004682 Homo sapiens miR-361-3p 12 80
>lja-miR7520 MIMAT0029335 Lotus japonicus miR7520
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccccct 7
|||||||
Sbjct: 8 tccccct 2
>mml-miR-6794-5p MIMAT0028294 Macaca mulatta miR-6794-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccccct 7
|||||||
Sbjct: 8 tccccct 2
>hsa-miR-6794-5p MIMAT0027488 Homo sapiens miR-6794-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccccct 7
|||||||
Sbjct: 8 tccccct 2
>blv-miR-B3-5p MIMAT0025862 Bovine leukemia miR-B3-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccccct 7
|||||||
Sbjct: 2 tccccct 8
>bta-miR-6535 MIMAT0025571 Bos taurus miR-6535
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccccct 7
|||||||
Sbjct: 8 tccccct 2
>mja-miR-6493-3p MIMAT0025302 Marsupenaeus japonicus miR-6493-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccccct 7
|||||||
Sbjct: 7 tccccct 1
>mml-miR-4716 MIMAT0024337 Macaca mulatta miR-4716
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccccct 7
|||||||
Sbjct: 8 tccccct 2
>mtr-miR5276 MIMAT0021314 Medicago truncatula miR5276
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccccct 7
|||||||
Sbjct: 7 tccccct 1
>hsa-miR-5010-5p MIMAT0021043 Homo sapiens miR-5010-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccccct 7
|||||||
Sbjct: 7 tccccct 1
>hsa-miR-4716-3p MIMAT0019827 Homo sapiens miR-4716-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccccct 7
|||||||
Sbjct: 8 tccccct 2
>hsa-miR-625-5p MIMAT0003294 Homo sapiens miR-625-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccccct 7
|||||||
Sbjct: 7 tccccct 1
>ata-miR9772b-3p MIMAT0037155 Aegilops tauschii miR9772b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 6 ccccct 1
>ata-miR9772a-3p MIMAT0037107 Aegilops tauschii miR9772a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 6 ccccct 1
>oha-miR-30b-3p MIMAT0036891 Ophiophagus hannah miR-30b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>chi-miR-361-3p MIMAT0036172 Capra hircus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>efu-miR-9224 MIMAT0034826 Eptesicus fuscus miR-9224
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>efu-miR-9194 MIMAT0034774 Eptesicus fuscus miR-9194
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>ppc-miR-8225-3p MIMAT0032893 Pristionchus pacificus miR-8225-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 8 ccccct 3
>stu-miR384-3p MIMAT0031374 Solanum tuberosum miR384-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 6 ccccct 1
>mdo-miR-7364-5p MIMAT0028740 Monodelphis domestica miR-7364-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>mml-miR-7200-5p MIMAT0028364 Macaca mulatta miR-7200-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>mml-miR-7195-5p MIMAT0028350 Macaca mulatta miR-7195-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 8 ccccct 3
>mmu-miR-7119-5p MIMAT0028135 Mus musculus miR-7119-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>mmu-miR-7082-3p MIMAT0028071 Mus musculus miR-7082-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccct 7
||||||
Sbjct: 3 ccccct 8
>mmu-miR-7045-3p MIMAT0027995 Mus musculus miR-7045-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 3 tccccc 8
>mmu-miR-7024-5p MIMAT0027952 Mus musculus miR-7024-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>mmu-miR-7023-5p MIMAT0027950 Mus musculus miR-7023-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>mmu-miR-6968-5p MIMAT0027838 Mus musculus miR-6968-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 6 ccccct 1
>mmu-miR-6941-5p MIMAT0027782 Mus musculus miR-6941-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>hsa-miR-6887-5p MIMAT0027674 Homo sapiens miR-6887-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>hsa-miR-6885-5p MIMAT0027670 Homo sapiens miR-6885-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 6 ccccct 1
>hsa-miR-6835-5p MIMAT0027570 Homo sapiens miR-6835-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 6 ccccct 1
>hsa-miR-6805-5p MIMAT0027510 Homo sapiens miR-6805-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 7 ccccct 2
>hsa-miR-6798-5p MIMAT0027496 Homo sapiens miR-6798-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 8 ccccct 3
>hsa-miR-6795-5p MIMAT0027490 Homo sapiens miR-6795-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>hsa-miR-6732-5p MIMAT0027365 Homo sapiens miR-6732-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 7 ccccct 2
>rno-miR-3072 MIMAT0025071 Rattus norvegicus miR-3072
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccct 7
||||||
Sbjct: 3 ccccct 8
>ggo-miR-4488 MIMAT0024152 Gorilla gorilla miR-4488
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 7 ccccct 2
>cgr-miR-3072-3p MIMAT0023893 Cricetulus griseus miR-3072-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccct 7
||||||
Sbjct: 3 ccccct 8
>mtr-miR5266 MIMAT0021275 Medicago truncatula miR5266
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>hsa-miR-4697-5p MIMAT0019791 Homo sapiens miR-4697-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 6 ccccct 1
>hsa-miR-4665-5p MIMAT0019739 Homo sapiens miR-4665-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>hsa-miR-4640-3p MIMAT0019700 Homo sapiens miR-4640-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccct 7
||||||
Sbjct: 3 ccccct 8
>pma-miR-4619 MIMAT0019653 Petromyzon marinus miR-4619
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccct 7
||||||
Sbjct: 3 ccccct 8
>pma-miR-4590 MIMAT0019623 Petromyzon marinus miR-4590
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>hsa-miR-4488 MIMAT0019022 Homo sapiens miR-4488
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 6 ccccct 1
>tca-miR-3840-5p MIMAT0018724 Tribolium castaneum miR-3840-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 6 ccccct 1
>hsa-miR-3679-3p MIMAT0018105 Homo sapiens miR-3679-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 3 tccccc 8
>hsa-miR-4278 MIMAT0016910 Homo sapiens miR-4278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 8 ccccct 3
>hsa-miR-4271 MIMAT0016901 Homo sapiens miR-4271
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 6 tccccc 1
>hsa-miR-4313 MIMAT0016865 Homo sapiens miR-4313
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccct 7
||||||
Sbjct: 3 ccccct 8
>ppy-miR-1275 MIMAT0016199 Pongo pygmaeus miR-1275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>ppy-miR-361-3p MIMAT0015849 Pongo pygmaeus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>mmu-miR-3104-5p MIMAT0014939 Mus musculus miR-3104-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 7 ccccct 2
>mmu-miR-3072-3p MIMAT0014853 Mus musculus miR-3072-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccct 7
||||||
Sbjct: 3 ccccct 8
>eca-miR-361-3p MIMAT0013209 Equus caballus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>bmo-miR-2724 MIMAT0012600 Bombyx mori miR-2724
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>bta-miR-2327 MIMAT0011856 Bos taurus miR-2327
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 6 ccccct 1
>bta-miR-2326 MIMAT0011855 Bos taurus miR-2326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccct 7
||||||
Sbjct: 2 ccccct 7
>ptr-miR-361 MIMAT0008115 Pan troglodytes miR-361
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>ptr-miR-1275 MIMAT0007996 Pan troglodytes miR-1275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>mml-miR-361-3p MIMAT0006287 Macaca mulatta miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>gga-miR-1606 MIMAT0007472 Gallus gallus miR-1606
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 6 ccccct 1
>oan-miR-1421p-5p MIMAT0007078 Ornithorhynchus anatinus
miR-1421p-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 6 ccccct 1
>oan-miR-1421g-5p MIMAT0006975 Ornithorhynchus anatinus
miR-1421g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 6 ccccct 1
>hsa-miR-1275 MIMAT0005929 Homo sapiens miR-1275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccc 6
||||||
Sbjct: 8 tccccc 3
>mghv-miR-M1-2-5p MIMAT0017186 Mouse gammaherpesvirus
miR-M1-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccct 7
||||||
Sbjct: 8 ccccct 3
>mmu-miR-361-3p MIMAT0017075 Mus musculus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
>hsa-miR-361-3p MIMAT0004682 Homo sapiens miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccc 6
||||||
Sbjct: 1 tccccc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 96
Number of extensions: 85
Number of successful extensions: 69
Number of sequences better than 100.0: 69
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 69
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)