BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m22-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
stu-miR408b-5p MIMAT0031339 Solanum tuberosum miR408b-5p 14 20
hsa-miR-6777-5p MIMAT0027454 Homo sapiens miR-6777-5p 14 20
mcmv-miR-m22-1 MIMAT0005541 Mouse cytomegalovirus miR-m22-1 14 20
oha-miR-1329-3p MIMAT0036697 Ophiophagus hannah miR-1329-3p 12 80
eca-miR-8994 MIMAT0034533 Equus caballus miR-8994 12 80
eca-miR-8920 MIMAT0034448 Equus caballus miR-8920 12 80
ath-miR8175 MIMAT0032774 Arabidopsis thaliana miR8175 12 80
oan-miR-7424-3p MIMAT0028999 Ornithorhynchus anatinus miR-7424-3p 12 80
mmu-miR-7075-5p MIMAT0028056 Mus musculus miR-7075-5p 12 80
mmu-miR-7059-5p MIMAT0028022 Mus musculus miR-7059-5p 12 80
mmu-miR-6966-5p MIMAT0027834 Mus musculus miR-6966-5p 12 80
cgr-miR-542-5p MIMAT0023983 Cricetulus griseus miR-542-5p 12 80
aca-miR-5404 MIMAT0022017 Anolis carolinensis miR-5404 12 80
aca-miR-425-3p MIMAT0021955 Anolis carolinensis miR-425-3p 12 80
asu-miR-36e-5p MIMAT0021447 Ascaris suum miR-36e-5p 12 80
asu-miR-36c-5p MIMAT0021443 Ascaris suum miR-36c-5p 12 80
hsa-miR-4749-5p MIMAT0019885 Homo sapiens miR-4749-5p 12 80
hsa-miR-4706 MIMAT0019806 Homo sapiens miR-4706 12 80
pma-miR-4590 MIMAT0019623 Petromyzon marinus miR-4590 12 80
tca-miR-3852-5p MIMAT0018760 Tribolium castaneum miR-3852-5p 12 80
hsa-miR-3175 MIMAT0015052 Homo sapiens miR-3175 12 80
mmu-miR-3062-3p MIMAT0014831 Mus musculus miR-3062-3p 12 80
eca-miR-542-5p MIMAT0013237 Equus caballus miR-542-5p 12 80
hbv-miR-B4 MIMAT0012171 Herpes B miR-B4 12 80
bta-miR-2373-5p MIMAT0011918 Bos taurus miR-2373-5p 12 80
bta-miR-2299-3p MIMAT0011808 Bos taurus miR-2299-3p 12 80
oan-miR-1408 MIMAT0007225 Ornithorhynchus anatinus miR-1408 12 80
cre-miR1151a-3p MIMAT0005394 Chlamydomonas reinhardtii miR1151a-3p 12 80
bmo-miR-14-5p MIMAT0015227 Bombyx mori miR-14-5p 12 80
ebv-miR-BART6-3p MIMAT0003415 Epstein Barr miR-BART6-3p 12 80
rno-miR-542-5p MIMAT0003178 Rattus norvegicus miR-542-5p 12 80
mmu-miR-542-5p MIMAT0003171 Mus musculus miR-542-5p 12 80
ptc-miR408-5p MIMAT0022913 Populus trichocarpa miR408-5p 12 80
>stu-miR408b-5p MIMAT0031339 Solanum tuberosum miR408b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccccgt 7
|||||||
Sbjct: 7 tccccgt 1
>hsa-miR-6777-5p MIMAT0027454 Homo sapiens miR-6777-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccccgt 7
|||||||
Sbjct: 7 tccccgt 1
>mcmv-miR-m22-1 MIMAT0005541 Mouse cytomegalovirus miR-m22-1
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccccgt 7
|||||||
Sbjct: 2 tccccgt 8
>oha-miR-1329-3p MIMAT0036697 Ophiophagus hannah miR-1329-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccgt 7
||||||
Sbjct: 1 ccccgt 6
>eca-miR-8994 MIMAT0034533 Equus caballus miR-8994
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccg 6
||||||
Sbjct: 1 tccccg 6
>eca-miR-8920 MIMAT0034448 Equus caballus miR-8920
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccg 6
||||||
Sbjct: 3 tccccg 8
>ath-miR8175 MIMAT0032774 Arabidopsis thaliana miR8175
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccg 6
||||||
Sbjct: 3 tccccg 8
>oan-miR-7424-3p MIMAT0028999 Ornithorhynchus anatinus
miR-7424-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccgt 7
||||||
Sbjct: 8 ccccgt 3
>mmu-miR-7075-5p MIMAT0028056 Mus musculus miR-7075-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 6 tccccg 1
>mmu-miR-7059-5p MIMAT0028022 Mus musculus miR-7059-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 8 tccccg 3
>mmu-miR-6966-5p MIMAT0027834 Mus musculus miR-6966-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 8 tccccg 3
>cgr-miR-542-5p MIMAT0023983 Cricetulus griseus miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 8 tccccg 3
>aca-miR-5404 MIMAT0022017 Anolis carolinensis miR-5404
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccgt 7
||||||
Sbjct: 3 ccccgt 8
>aca-miR-425-3p MIMAT0021955 Anolis carolinensis miR-425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccgt 7
||||||
Sbjct: 8 ccccgt 3
>asu-miR-36e-5p MIMAT0021447 Ascaris suum miR-36e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 6 tccccg 1
>asu-miR-36c-5p MIMAT0021443 Ascaris suum miR-36c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 6 tccccg 1
>hsa-miR-4749-5p MIMAT0019885 Homo sapiens miR-4749-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 8 tccccg 3
>hsa-miR-4706 MIMAT0019806 Homo sapiens miR-4706
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 8 tccccg 3
>pma-miR-4590 MIMAT0019623 Petromyzon marinus miR-4590
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccgt 7
||||||
Sbjct: 6 ccccgt 1
>tca-miR-3852-5p MIMAT0018760 Tribolium castaneum miR-3852-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccgt 7
||||||
Sbjct: 6 ccccgt 1
>hsa-miR-3175 MIMAT0015052 Homo sapiens miR-3175
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 6 tccccg 1
>mmu-miR-3062-3p MIMAT0014831 Mus musculus miR-3062-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 6 tccccg 1
>eca-miR-542-5p MIMAT0013237 Equus caballus miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 8 tccccg 3
>hbv-miR-B4 MIMAT0012171 Herpes B miR-B4
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccgt 7
||||||
Sbjct: 6 ccccgt 1
>bta-miR-2373-5p MIMAT0011918 Bos taurus miR-2373-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccccg 6
||||||
Sbjct: 3 tccccg 8
>bta-miR-2299-3p MIMAT0011808 Bos taurus miR-2299-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 8 tccccg 3
>oan-miR-1408 MIMAT0007225 Ornithorhynchus anatinus miR-1408
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 6 tccccg 1
>cre-miR1151a-3p MIMAT0005394 Chlamydomonas reinhardtii
miR1151a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccgt 7
||||||
Sbjct: 6 ccccgt 1
>bmo-miR-14-5p MIMAT0015227 Bombyx mori miR-14-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 6 tccccg 1
>ebv-miR-BART6-3p MIMAT0003415 Epstein Barr miR-BART6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 6 tccccg 1
>rno-miR-542-5p MIMAT0003178 Rattus norvegicus miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 8 tccccg 3
>mmu-miR-542-5p MIMAT0003171 Mus musculus miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 8 tccccg 3
>ptc-miR408-5p MIMAT0022913 Populus trichocarpa miR408-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccccg 6
||||||
Sbjct: 6 tccccg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 51
Number of extensions: 48
Number of successful extensions: 33
Number of sequences better than 100.0: 33
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 33
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
