BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r6-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-8937 MIMAT0034466 Equus caballus miR-8937 16 6.9
tch-miR-1247-5p MIMAT0036594 Tupaia chinensis miR-1247-5p 14 27
rno-miR-149-3p MIMAT0035727 Rattus norvegicus miR-149-3p 14 27
rno-miR-1247-5p MIMAT0035721 Rattus norvegicus miR-1247-5p 14 27
ppc-miR-360-3p MIMAT0033130 Pristionchus pacificus miR-360-3p 14 27
mml-miR-1247-5p MIMAT0028358 Macaca mulatta miR-1247-5p 14 27
bta-miR-1247-5p MIMAT0025549 Bos taurus miR-1247-5p 14 27
ppy-miR-1247 MIMAT0016172 Pongo pygmaeus miR-1247 14 27
dvi-miR-92a-5p MIMAT0032099 Drosophila virilis miR-92a-5p 14 27
ptr-miR-1247 MIMAT0007973 Pan troglodytes miR-1247 14 27
hsa-miR-1247-5p MIMAT0005899 Homo sapiens miR-1247-5p 14 27
mmu-miR-1247-5p MIMAT0014800 Mus musculus miR-1247-5p 14 27
dme-miR-92a-5p MIMAT0020802 Drosophila melanogaster miR-92a-5p 14 27
>eca-miR-8937 MIMAT0034466 Equus caballus miR-8937
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcccgtcc 8
||||||||
Sbjct: 1 tcccgtcc 8
>tch-miR-1247-5p MIMAT0036594 Tupaia chinensis miR-1247-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cccgtcc 8
|||||||
Sbjct: 2 cccgtcc 8
>rno-miR-149-3p MIMAT0035727 Rattus norvegicus miR-149-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cccgtcc 8
|||||||
Sbjct: 8 cccgtcc 2
>rno-miR-1247-5p MIMAT0035721 Rattus norvegicus miR-1247-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cccgtcc 8
|||||||
Sbjct: 2 cccgtcc 8
>ppc-miR-360-3p MIMAT0033130 Pristionchus pacificus miR-360-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cccgtcc 8
|||||||
Sbjct: 1 cccgtcc 7
>mml-miR-1247-5p MIMAT0028358 Macaca mulatta miR-1247-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cccgtcc 8
|||||||
Sbjct: 2 cccgtcc 8
>bta-miR-1247-5p MIMAT0025549 Bos taurus miR-1247-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cccgtcc 8
|||||||
Sbjct: 2 cccgtcc 8
>ppy-miR-1247 MIMAT0016172 Pongo pygmaeus miR-1247
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cccgtcc 8
|||||||
Sbjct: 2 cccgtcc 8
>dvi-miR-92a-5p MIMAT0032099 Drosophila virilis miR-92a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cccgtcc 8
|||||||
Sbjct: 8 cccgtcc 2
>ptr-miR-1247 MIMAT0007973 Pan troglodytes miR-1247
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cccgtcc 8
|||||||
Sbjct: 2 cccgtcc 8
>hsa-miR-1247-5p MIMAT0005899 Homo sapiens miR-1247-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cccgtcc 8
|||||||
Sbjct: 2 cccgtcc 8
>mmu-miR-1247-5p MIMAT0014800 Mus musculus miR-1247-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cccgtcc 8
|||||||
Sbjct: 2 cccgtcc 8
>dme-miR-92a-5p MIMAT0020802 Drosophila melanogaster miR-92a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cccgtcc 8
|||||||
Sbjct: 8 cccgtcc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 153
Number of extensions: 139
Number of successful extensions: 126
Number of sequences better than 100.0: 13
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
