BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prv-miR-11-1
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

eca-miR-8928 MIMAT0034456 Equus caballus miR-8928                      14      20
cel-miR-8208-5p MIMAT0032833 Caenorhabditis elegans miR-8208-5p        14      20
sha-miR-1549 MIMAT0022824 Sarcophilus harrisii miR-1549                14      20
zma-miR398b-5p MIMAT0015355 Zea mays miR398b-5p                        14      20
cel-miR-1832a-3p MIMAT0006774 Caenorhabditis elegans miR-1832a-3p      14      20
mdo-miR-1549-3p MIMAT0006149 Monodelphis domestica miR-1549-3p         14      20
ssc-miR-9824-5p MIMAT0037042 Sus scrofa miR-9824-5p                    12      80
tae-miR9677b MIMAT0036998 Triticum aestivum miR9677b                   12      80
pxy-miR-8528a MIMAT0033748 Plutella xylostella miR-8528a               12      80
ppc-miR-63j-5p MIMAT0032916 Pristionchus pacificus miR-63j-5p          12      80
mmu-miR-8112 MIMAT0031418 Mus musculus miR-8112                        12      80
bdi-miR7719-5p MIMAT0030160 Brachypodium distachyon miR7719-5p         12      80
gga-miR-7477-3p MIMAT0029109 Gallus gallus miR-7477-3p                 12      80
gga-miR-7475-3p MIMAT0029105 Gallus gallus miR-7475-3p                 12      80
mdo-miR-7375-3p MIMAT0028797 Monodelphis domestica miR-7375-3p         12      80
mml-miR-7165-5p MIMAT0028262 Macaca mulatta miR-7165-5p                12      80
hsa-miR-7108-3p MIMAT0028114 Homo sapiens miR-7108-3p                  12      80
hsa-miR-6816-5p MIMAT0027532 Homo sapiens miR-6816-5p                  12      80
bta-miR-3141 MIMAT0024573 Bos taurus miR-3141                          12      80
ggo-miR-1228 MIMAT0024229 Gorilla gorilla miR-1228                     12      80
osa-miR5832 MIMAT0023307 Oryza sativa miR5832                          12      80
cel-miR-5550-5p MIMAT0022191 Caenorhabditis elegans miR-5550-5p        12      80
asu-miR-5356a-5p MIMAT0021572 Ascaris suum miR-5356a-5p                12      80
mmu-miR-5126 MIMAT0020637 Mus musculus miR-5126                        12      80
dme-miR-4947-5p MIMAT0020157 Drosophila melanogaster miR-4947-5p       12      80
hsa-miR-4730 MIMAT0019852 Homo sapiens miR-4730                        12      80
hsa-miR-4632-3p MIMAT0019688 Homo sapiens miR-4632-3p                  12      80
pma-miR-25b-5p MIMAT0019406 Petromyzon marinus miR-25b-5p              12      80
hsa-miR-3180 MIMAT0018178 Homo sapiens miR-3180                        12      80
ame-miR-3775 MIMAT0018552 Apis mellifera miR-3775                      12      80
ppy-miR-658 MIMAT0016091 Pongo pygmaeus miR-658                        12      80
esi-miR3453-3p MIMAT0017780 Ectocarpus siliculosus miR3453-3p          12      80
hsa-miR-3196 MIMAT0015080 Homo sapiens miR-3196                        12      80
hsa-miR-3180-3p MIMAT0015058 Homo sapiens miR-3180-3p                  12      80
hsa-miR-3141 MIMAT0015010 Homo sapiens miR-3141                        12      80
ptr-miR-718 MIMAT0012821 Pan troglodytes miR-718                       12      80
hsa-miR-718 MIMAT0012735 Homo sapiens miR-718                          12      80
hvt-miR-H4-3p MIMAT0012715 Herpesvirus of miR-H4-3p                    12      80
hvt-miR-H4-5p MIMAT0012714 Herpesvirus of miR-H4-5p                    12      80
bmo-miR-2766-5p MIMAT0013641 Bombyx mori miR-2766-5p                   12      80
dps-miR-2532 MIMAT0012321 Drosophila pseudoobscura miR-2532            12      80
bta-miR-1777b MIMAT0012046 Bos taurus miR-1777b                        12      80
bta-miR-2407 MIMAT0011965 Bos taurus miR-2407                          12      80
cfa-miR-718 MIMAT0009939 Canis familiaris miR-718                      12      80
bta-miR-658 MIMAT0009362 Bos taurus miR-658                            12      80
ptr-miR-658 MIMAT0008307 Pan troglodytes miR-658                       12      80
mmu-miR-1900 MIMAT0007870 Mus musculus miR-1900                        12      80
gga-miR-1777 MIMAT0007688 Gallus gallus miR-1777                       12      80
gga-miR-1763 MIMAT0007670 Gallus gallus miR-1763                       12      80
gga-miR-1607 MIMAT0007473 Gallus gallus miR-1607                       12      80
hsa-miR-1228-5p MIMAT0005582 Homo sapiens miR-1228-5p                  12      80
mmu-miR-718 MIMAT0003514 Mus musculus miR-718                          12      80
hsa-miR-658 MIMAT0003336 Homo sapiens miR-658                          12      80
sbi-miR169d-3p MIMAT0026431 Sorghum bicolor miR169d-3p                 12      80
>eca-miR-8928 MIMAT0034456 Equus caballus miR-8928
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tccgccc 7
         |||||||
Sbjct: 2 tccgccc 8
>cel-miR-8208-5p MIMAT0032833 Caenorhabditis elegans miR-8208-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tccgccc 7
         |||||||
Sbjct: 1 tccgccc 7
>sha-miR-1549 MIMAT0022824 Sarcophilus harrisii miR-1549
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tccgccc 7
         |||||||
Sbjct: 2 tccgccc 8
>zma-miR398b-5p MIMAT0015355 Zea mays miR398b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tccgccc 7
         |||||||
Sbjct: 8 tccgccc 2
>cel-miR-1832a-3p MIMAT0006774 Caenorhabditis elegans
         miR-1832a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tccgccc 7
         |||||||
Sbjct: 8 tccgccc 2
>mdo-miR-1549-3p MIMAT0006149 Monodelphis domestica miR-1549-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tccgccc 7
         |||||||
Sbjct: 2 tccgccc 8
>ssc-miR-9824-5p MIMAT0037042 Sus scrofa miR-9824-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 6 tccgcc 1
>tae-miR9677b MIMAT0036998 Triticum aestivum miR9677b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>pxy-miR-8528a MIMAT0033748 Plutella xylostella miR-8528a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 6 ccgccc 1
>ppc-miR-63j-5p MIMAT0032916 Pristionchus pacificus miR-63j-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 1 ccgccc 6
>mmu-miR-8112 MIMAT0031418 Mus musculus miR-8112
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 3 tccgcc 8
>bdi-miR7719-5p MIMAT0030160 Brachypodium distachyon miR7719-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 1 tccgcc 6
>gga-miR-7477-3p MIMAT0029109 Gallus gallus miR-7477-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 3 ccgccc 8
>gga-miR-7475-3p MIMAT0029105 Gallus gallus miR-7475-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>mdo-miR-7375-3p MIMAT0028797 Monodelphis domestica miR-7375-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>mml-miR-7165-5p MIMAT0028262 Macaca mulatta miR-7165-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 6 ccgccc 1
>hsa-miR-7108-3p MIMAT0028114 Homo sapiens miR-7108-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 3 ccgccc 8
>hsa-miR-6816-5p MIMAT0027532 Homo sapiens miR-6816-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>bta-miR-3141 MIMAT0024573 Bos taurus miR-3141
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>ggo-miR-1228 MIMAT0024229 Gorilla gorilla miR-1228
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>osa-miR5832 MIMAT0023307 Oryza sativa miR5832
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 8 tccgcc 3
>cel-miR-5550-5p MIMAT0022191 Caenorhabditis elegans miR-5550-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 3 ccgccc 8
>asu-miR-5356a-5p MIMAT0021572 Ascaris suum miR-5356a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 1 ccgccc 6
>mmu-miR-5126 MIMAT0020637 Mus musculus miR-5126
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>dme-miR-4947-5p MIMAT0020157 Drosophila melanogaster
         miR-4947-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 3 tccgcc 8
>hsa-miR-4730 MIMAT0019852 Homo sapiens miR-4730
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 8 tccgcc 3
>hsa-miR-4632-3p MIMAT0019688 Homo sapiens miR-4632-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 3 ccgccc 8
>pma-miR-25b-5p MIMAT0019406 Petromyzon marinus miR-25b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 6 tccgcc 1
>hsa-miR-3180 MIMAT0018178 Homo sapiens miR-3180
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>ame-miR-3775 MIMAT0018552 Apis mellifera miR-3775
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 8 tccgcc 3
>ppy-miR-658 MIMAT0016091 Pongo pygmaeus miR-658
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 6 tccgcc 1
>esi-miR3453-3p MIMAT0017780 Ectocarpus siliculosus miR3453-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 6 tccgcc 1
>hsa-miR-3196 MIMAT0015080 Homo sapiens miR-3196
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>hsa-miR-3180-3p MIMAT0015058 Homo sapiens miR-3180-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>hsa-miR-3141 MIMAT0015010 Homo sapiens miR-3141
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>ptr-miR-718 MIMAT0012821 Pan troglodytes miR-718
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 3 tccgcc 8
>hsa-miR-718 MIMAT0012735 Homo sapiens miR-718
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 3 tccgcc 8
>hvt-miR-H4-3p MIMAT0012715 Herpesvirus of miR-H4-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 6 ccgccc 1
>hvt-miR-H4-5p MIMAT0012714 Herpesvirus of miR-H4-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 6 tccgcc 1
>bmo-miR-2766-5p MIMAT0013641 Bombyx mori miR-2766-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 1 ccgccc 6
>dps-miR-2532 MIMAT0012321 Drosophila pseudoobscura miR-2532
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 7 ccgccc 2
>bta-miR-1777b MIMAT0012046 Bos taurus miR-1777b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>bta-miR-2407 MIMAT0011965 Bos taurus miR-2407
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>cfa-miR-718 MIMAT0009939 Canis familiaris miR-718
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 3 tccgcc 8
>bta-miR-658 MIMAT0009362 Bos taurus miR-658
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 6 tccgcc 1
>ptr-miR-658 MIMAT0008307 Pan troglodytes miR-658
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 6 tccgcc 1
>mmu-miR-1900 MIMAT0007870 Mus musculus miR-1900
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 3 ccgccc 8
>gga-miR-1777 MIMAT0007688 Gallus gallus miR-1777
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>gga-miR-1763 MIMAT0007670 Gallus gallus miR-1763
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>gga-miR-1607 MIMAT0007473 Gallus gallus miR-1607
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>hsa-miR-1228-5p MIMAT0005582 Homo sapiens miR-1228-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 8 ccgccc 3
>mmu-miR-718 MIMAT0003514 Mus musculus miR-718
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 3 tccgcc 8
>hsa-miR-658 MIMAT0003336 Homo sapiens miR-658
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tccgcc 6
         ||||||
Sbjct: 6 tccgcc 1
>sbi-miR169d-3p MIMAT0026431 Sorghum bicolor miR169d-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ccgccc 7
         ||||||
Sbjct: 6 ccgccc 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 79
Number of extensions: 73
Number of successful extensions: 54
Number of sequences better than 100.0: 54
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 54
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)