BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-11-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-8928 MIMAT0034456 Equus caballus miR-8928 14 20
cel-miR-8208-5p MIMAT0032833 Caenorhabditis elegans miR-8208-5p 14 20
sha-miR-1549 MIMAT0022824 Sarcophilus harrisii miR-1549 14 20
zma-miR398b-5p MIMAT0015355 Zea mays miR398b-5p 14 20
cel-miR-1832a-3p MIMAT0006774 Caenorhabditis elegans miR-1832a-3p 14 20
mdo-miR-1549-3p MIMAT0006149 Monodelphis domestica miR-1549-3p 14 20
ssc-miR-9824-5p MIMAT0037042 Sus scrofa miR-9824-5p 12 80
tae-miR9677b MIMAT0036998 Triticum aestivum miR9677b 12 80
pxy-miR-8528a MIMAT0033748 Plutella xylostella miR-8528a 12 80
ppc-miR-63j-5p MIMAT0032916 Pristionchus pacificus miR-63j-5p 12 80
mmu-miR-8112 MIMAT0031418 Mus musculus miR-8112 12 80
bdi-miR7719-5p MIMAT0030160 Brachypodium distachyon miR7719-5p 12 80
gga-miR-7477-3p MIMAT0029109 Gallus gallus miR-7477-3p 12 80
gga-miR-7475-3p MIMAT0029105 Gallus gallus miR-7475-3p 12 80
mdo-miR-7375-3p MIMAT0028797 Monodelphis domestica miR-7375-3p 12 80
mml-miR-7165-5p MIMAT0028262 Macaca mulatta miR-7165-5p 12 80
hsa-miR-7108-3p MIMAT0028114 Homo sapiens miR-7108-3p 12 80
hsa-miR-6816-5p MIMAT0027532 Homo sapiens miR-6816-5p 12 80
bta-miR-3141 MIMAT0024573 Bos taurus miR-3141 12 80
ggo-miR-1228 MIMAT0024229 Gorilla gorilla miR-1228 12 80
osa-miR5832 MIMAT0023307 Oryza sativa miR5832 12 80
cel-miR-5550-5p MIMAT0022191 Caenorhabditis elegans miR-5550-5p 12 80
asu-miR-5356a-5p MIMAT0021572 Ascaris suum miR-5356a-5p 12 80
mmu-miR-5126 MIMAT0020637 Mus musculus miR-5126 12 80
dme-miR-4947-5p MIMAT0020157 Drosophila melanogaster miR-4947-5p 12 80
hsa-miR-4730 MIMAT0019852 Homo sapiens miR-4730 12 80
hsa-miR-4632-3p MIMAT0019688 Homo sapiens miR-4632-3p 12 80
pma-miR-25b-5p MIMAT0019406 Petromyzon marinus miR-25b-5p 12 80
hsa-miR-3180 MIMAT0018178 Homo sapiens miR-3180 12 80
ame-miR-3775 MIMAT0018552 Apis mellifera miR-3775 12 80
ppy-miR-658 MIMAT0016091 Pongo pygmaeus miR-658 12 80
esi-miR3453-3p MIMAT0017780 Ectocarpus siliculosus miR3453-3p 12 80
hsa-miR-3196 MIMAT0015080 Homo sapiens miR-3196 12 80
hsa-miR-3180-3p MIMAT0015058 Homo sapiens miR-3180-3p 12 80
hsa-miR-3141 MIMAT0015010 Homo sapiens miR-3141 12 80
ptr-miR-718 MIMAT0012821 Pan troglodytes miR-718 12 80
hsa-miR-718 MIMAT0012735 Homo sapiens miR-718 12 80
hvt-miR-H4-3p MIMAT0012715 Herpesvirus of miR-H4-3p 12 80
hvt-miR-H4-5p MIMAT0012714 Herpesvirus of miR-H4-5p 12 80
bmo-miR-2766-5p MIMAT0013641 Bombyx mori miR-2766-5p 12 80
dps-miR-2532 MIMAT0012321 Drosophila pseudoobscura miR-2532 12 80
bta-miR-1777b MIMAT0012046 Bos taurus miR-1777b 12 80
bta-miR-2407 MIMAT0011965 Bos taurus miR-2407 12 80
cfa-miR-718 MIMAT0009939 Canis familiaris miR-718 12 80
bta-miR-658 MIMAT0009362 Bos taurus miR-658 12 80
ptr-miR-658 MIMAT0008307 Pan troglodytes miR-658 12 80
mmu-miR-1900 MIMAT0007870 Mus musculus miR-1900 12 80
gga-miR-1777 MIMAT0007688 Gallus gallus miR-1777 12 80
gga-miR-1763 MIMAT0007670 Gallus gallus miR-1763 12 80
gga-miR-1607 MIMAT0007473 Gallus gallus miR-1607 12 80
hsa-miR-1228-5p MIMAT0005582 Homo sapiens miR-1228-5p 12 80
mmu-miR-718 MIMAT0003514 Mus musculus miR-718 12 80
hsa-miR-658 MIMAT0003336 Homo sapiens miR-658 12 80
sbi-miR169d-3p MIMAT0026431 Sorghum bicolor miR169d-3p 12 80
>eca-miR-8928 MIMAT0034456 Equus caballus miR-8928
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccgccc 7
|||||||
Sbjct: 2 tccgccc 8
>cel-miR-8208-5p MIMAT0032833 Caenorhabditis elegans miR-8208-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccgccc 7
|||||||
Sbjct: 1 tccgccc 7
>sha-miR-1549 MIMAT0022824 Sarcophilus harrisii miR-1549
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccgccc 7
|||||||
Sbjct: 2 tccgccc 8
>zma-miR398b-5p MIMAT0015355 Zea mays miR398b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccgccc 7
|||||||
Sbjct: 8 tccgccc 2
>cel-miR-1832a-3p MIMAT0006774 Caenorhabditis elegans
miR-1832a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tccgccc 7
|||||||
Sbjct: 8 tccgccc 2
>mdo-miR-1549-3p MIMAT0006149 Monodelphis domestica miR-1549-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccgccc 7
|||||||
Sbjct: 2 tccgccc 8
>ssc-miR-9824-5p MIMAT0037042 Sus scrofa miR-9824-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcc 6
||||||
Sbjct: 6 tccgcc 1
>tae-miR9677b MIMAT0036998 Triticum aestivum miR9677b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>pxy-miR-8528a MIMAT0033748 Plutella xylostella miR-8528a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 6 ccgccc 1
>ppc-miR-63j-5p MIMAT0032916 Pristionchus pacificus miR-63j-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgccc 7
||||||
Sbjct: 1 ccgccc 6
>mmu-miR-8112 MIMAT0031418 Mus musculus miR-8112
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccgcc 6
||||||
Sbjct: 3 tccgcc 8
>bdi-miR7719-5p MIMAT0030160 Brachypodium distachyon miR7719-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccgcc 6
||||||
Sbjct: 1 tccgcc 6
>gga-miR-7477-3p MIMAT0029109 Gallus gallus miR-7477-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgccc 7
||||||
Sbjct: 3 ccgccc 8
>gga-miR-7475-3p MIMAT0029105 Gallus gallus miR-7475-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>mdo-miR-7375-3p MIMAT0028797 Monodelphis domestica miR-7375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>mml-miR-7165-5p MIMAT0028262 Macaca mulatta miR-7165-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 6 ccgccc 1
>hsa-miR-7108-3p MIMAT0028114 Homo sapiens miR-7108-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgccc 7
||||||
Sbjct: 3 ccgccc 8
>hsa-miR-6816-5p MIMAT0027532 Homo sapiens miR-6816-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>bta-miR-3141 MIMAT0024573 Bos taurus miR-3141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>ggo-miR-1228 MIMAT0024229 Gorilla gorilla miR-1228
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>osa-miR5832 MIMAT0023307 Oryza sativa miR5832
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcc 6
||||||
Sbjct: 8 tccgcc 3
>cel-miR-5550-5p MIMAT0022191 Caenorhabditis elegans miR-5550-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgccc 7
||||||
Sbjct: 3 ccgccc 8
>asu-miR-5356a-5p MIMAT0021572 Ascaris suum miR-5356a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgccc 7
||||||
Sbjct: 1 ccgccc 6
>mmu-miR-5126 MIMAT0020637 Mus musculus miR-5126
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>dme-miR-4947-5p MIMAT0020157 Drosophila melanogaster
miR-4947-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccgcc 6
||||||
Sbjct: 3 tccgcc 8
>hsa-miR-4730 MIMAT0019852 Homo sapiens miR-4730
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcc 6
||||||
Sbjct: 8 tccgcc 3
>hsa-miR-4632-3p MIMAT0019688 Homo sapiens miR-4632-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgccc 7
||||||
Sbjct: 3 ccgccc 8
>pma-miR-25b-5p MIMAT0019406 Petromyzon marinus miR-25b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcc 6
||||||
Sbjct: 6 tccgcc 1
>hsa-miR-3180 MIMAT0018178 Homo sapiens miR-3180
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>ame-miR-3775 MIMAT0018552 Apis mellifera miR-3775
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcc 6
||||||
Sbjct: 8 tccgcc 3
>ppy-miR-658 MIMAT0016091 Pongo pygmaeus miR-658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcc 6
||||||
Sbjct: 6 tccgcc 1
>esi-miR3453-3p MIMAT0017780 Ectocarpus siliculosus miR3453-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcc 6
||||||
Sbjct: 6 tccgcc 1
>hsa-miR-3196 MIMAT0015080 Homo sapiens miR-3196
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>hsa-miR-3180-3p MIMAT0015058 Homo sapiens miR-3180-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>hsa-miR-3141 MIMAT0015010 Homo sapiens miR-3141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>ptr-miR-718 MIMAT0012821 Pan troglodytes miR-718
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccgcc 6
||||||
Sbjct: 3 tccgcc 8
>hsa-miR-718 MIMAT0012735 Homo sapiens miR-718
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccgcc 6
||||||
Sbjct: 3 tccgcc 8
>hvt-miR-H4-3p MIMAT0012715 Herpesvirus of miR-H4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 6 ccgccc 1
>hvt-miR-H4-5p MIMAT0012714 Herpesvirus of miR-H4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcc 6
||||||
Sbjct: 6 tccgcc 1
>bmo-miR-2766-5p MIMAT0013641 Bombyx mori miR-2766-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgccc 7
||||||
Sbjct: 1 ccgccc 6
>dps-miR-2532 MIMAT0012321 Drosophila pseudoobscura miR-2532
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 7 ccgccc 2
>bta-miR-1777b MIMAT0012046 Bos taurus miR-1777b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>bta-miR-2407 MIMAT0011965 Bos taurus miR-2407
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>cfa-miR-718 MIMAT0009939 Canis familiaris miR-718
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccgcc 6
||||||
Sbjct: 3 tccgcc 8
>bta-miR-658 MIMAT0009362 Bos taurus miR-658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcc 6
||||||
Sbjct: 6 tccgcc 1
>ptr-miR-658 MIMAT0008307 Pan troglodytes miR-658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcc 6
||||||
Sbjct: 6 tccgcc 1
>mmu-miR-1900 MIMAT0007870 Mus musculus miR-1900
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgccc 7
||||||
Sbjct: 3 ccgccc 8
>gga-miR-1777 MIMAT0007688 Gallus gallus miR-1777
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>gga-miR-1763 MIMAT0007670 Gallus gallus miR-1763
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>gga-miR-1607 MIMAT0007473 Gallus gallus miR-1607
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>hsa-miR-1228-5p MIMAT0005582 Homo sapiens miR-1228-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 8 ccgccc 3
>mmu-miR-718 MIMAT0003514 Mus musculus miR-718
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccgcc 6
||||||
Sbjct: 3 tccgcc 8
>hsa-miR-658 MIMAT0003336 Homo sapiens miR-658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcc 6
||||||
Sbjct: 6 tccgcc 1
>sbi-miR169d-3p MIMAT0026431 Sorghum bicolor miR169d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgccc 7
||||||
Sbjct: 6 ccgccc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 79
Number of extensions: 73
Number of successful extensions: 54
Number of sequences better than 100.0: 54
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 54
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)