BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d12-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9185 MIMAT0034766 Equus caballus miR-9185 14 20
prd-miR-7941-5p MIMAT0030742 Panagrellus redivivus miR-7941-5p 14 20
dev-miR-D12-3p MIMAT0028185 Duck enteritis miR-D12-3p 14 20
sma-miR-8470-5p MIMAT0033659 Schistosoma mansoni miR-8470-5p 12 80
ppc-miR-8340-5p MIMAT0033225 Pristionchus pacificus miR-8340-5p 12 80
prd-miR-7942-5p MIMAT0030744 Panagrellus redivivus miR-7942-5p 12 80
ipu-miR-7548 MIMAT0029540 Ictalurus punctatus miR-7548 12 80
mdo-miR-7311-3p MIMAT0028621 Monodelphis domestica miR-7311-3p 12 80
bta-miR-6530 MIMAT0025566 Bos taurus miR-6530 12 80
hvsa-miR-HSUR5-5p MIMAT0022682 Herpesvirus saimiri miR-HSUR5-5p 12 80
mmu-miR-5122 MIMAT0020630 Mus musculus miR-5122 12 80
dme-miR-4955-5p MIMAT0020171 Drosophila melanogaster miR-4955-5p 12 80
pma-miR-4624 MIMAT0019658 Petromyzon marinus miR-4624 12 80
pma-miR-4580 MIMAT0019613 Petromyzon marinus miR-4580 12 80
ame-miR-3746 MIMAT0018514 Apis mellifera miR-3746 12 80
hsa-miR-3648 MIMAT0018068 Homo sapiens miR-3648 12 80
rrv-miR-rR1-6-5p MIMAT0004413 Rhesus monkey miR-rR1-6-5p 12 80
>eca-miR-9185 MIMAT0034766 Equus caballus miR-9185
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccgcgg 7
|||||||
Sbjct: 2 tccgcgg 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgcgg 7
||||||
Sbjct: 8 ccgcgg 3
>prd-miR-7941-5p MIMAT0030742 Panagrellus redivivus miR-7941-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccgcgg 7
|||||||
Sbjct: 2 tccgcgg 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgcgg 7
||||||
Sbjct: 8 ccgcgg 3
>dev-miR-D12-3p MIMAT0028185 Duck enteritis miR-D12-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccgcgg 7
|||||||
Sbjct: 2 tccgcgg 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgcgg 7
||||||
Sbjct: 8 ccgcgg 3
>sma-miR-8470-5p MIMAT0033659 Schistosoma mansoni miR-8470-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcg 6
||||||
Sbjct: 6 tccgcg 1
>ppc-miR-8340-5p MIMAT0033225 Pristionchus pacificus miR-8340-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcg 6
||||||
Sbjct: 8 tccgcg 3
>prd-miR-7942-5p MIMAT0030744 Panagrellus redivivus miR-7942-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcg 6
||||||
Sbjct: 8 tccgcg 3
>ipu-miR-7548 MIMAT0029540 Ictalurus punctatus miR-7548
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgcgg 7
||||||
Sbjct: 8 ccgcgg 3
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgcgg 7
||||||
Sbjct: 3 ccgcgg 8
>mdo-miR-7311-3p MIMAT0028621 Monodelphis domestica miR-7311-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccgcg 6
||||||
Sbjct: 1 tccgcg 6
>bta-miR-6530 MIMAT0025566 Bos taurus miR-6530
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcg 6
||||||
Sbjct: 6 tccgcg 1
>hvsa-miR-HSUR5-5p MIMAT0022682 Herpesvirus saimiri miR-HSUR5-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccgcg 6
||||||
Sbjct: 1 tccgcg 6
>mmu-miR-5122 MIMAT0020630 Mus musculus miR-5122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgcgg 7
||||||
Sbjct: 6 ccgcgg 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgcgg 7
||||||
Sbjct: 1 ccgcgg 6
>dme-miR-4955-5p MIMAT0020171 Drosophila melanogaster
miR-4955-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcg 6
||||||
Sbjct: 6 tccgcg 1
>pma-miR-4624 MIMAT0019658 Petromyzon marinus miR-4624
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgcgg 7
||||||
Sbjct: 6 ccgcgg 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgcgg 7
||||||
Sbjct: 1 ccgcgg 6
>pma-miR-4580 MIMAT0019613 Petromyzon marinus miR-4580
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccgcg 6
||||||
Sbjct: 3 tccgcg 8
>ame-miR-3746 MIMAT0018514 Apis mellifera miR-3746
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcg 6
||||||
Sbjct: 6 tccgcg 1
>hsa-miR-3648 MIMAT0018068 Homo sapiens miR-3648
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgcgg 7
||||||
Sbjct: 8 ccgcgg 3
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgcgg 7
||||||
Sbjct: 3 ccgcgg 8
>rrv-miR-rR1-6-5p MIMAT0004413 Rhesus monkey miR-rR1-6-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccgcg 6
||||||
Sbjct: 6 tccgcg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 32
Number of extensions: 29
Number of successful extensions: 24
Number of sequences better than 100.0: 17
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 24
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
