BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h24
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bhv5-miR-B13 MIMAT0035710 Bovine herpesvirus miR-B13 14 20
hsv2-miR-H24 MIMAT0014707 Herpes Simplex miR-H24 14 20
bmo-miR-2748 MIMAT0012627 Bombyx mori miR-2748 14 20
osa-miR1437a MIMAT0005988 Oryza sativa miR1437a 14 20
sma-miR-8461-5p MIMAT0033639 Schistosoma mansoni miR-8461-5p 12 80
ppc-miR-8360-5p MIMAT0033282 Pristionchus pacificus miR-8360-5p 12 80
osa-miR531c MIMAT0031379 Oryza sativa miR531c 12 80
prd-miR-50-3p MIMAT0030483 Panagrellus redivivus miR-50-3p 12 80
mdo-miR-7306-3p MIMAT0028607 Monodelphis domestica miR-7306-3p 12 80
mml-miR-1180-3p MIMAT0028265 Macaca mulatta miR-1180-3p 12 80
hcmv-miR-US22-3p MIMAT0028166 Human cytomegalovirus miR-US22-3p 12 80
gga-miR-6648-3p MIMAT0025747 Gallus gallus miR-6648-3p 12 80
ppy-miR-4743 MIMAT0024366 Pongo pygmaeus miR-4743 12 80
mml-miR-4743 MIMAT0024327 Macaca mulatta miR-4743 12 80
ggo-miR-4743 MIMAT0024255 Gorilla gorilla miR-4743 12 80
ggo-miR-1180 MIMAT0024214 Gorilla gorilla miR-1180 12 80
ptr-miR-4743 MIMAT0024045 Pan troglodytes miR-4743 12 80
tur-miR-87-5p MIMAT0023066 Tetranychus urticae miR-87-5p 12 80
dme-miR-4952-5p MIMAT0020166 Drosophila melanogaster miR-4952-5p 12 80
hsa-miR-4743-5p MIMAT0019874 Homo sapiens miR-4743-5p 12 80
hsa-miR-4442 MIMAT0018960 Homo sapiens miR-4442 12 80
cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p 12 80
ppy-miR-1180 MIMAT0016145 Pongo pygmaeus miR-1180 12 80
aly-miR397a-3p MIMAT0017562 Arabidopsis lyrata miR397a-3p 12 80
bmo-miR-2808d MIMAT0015386 Bombyx mori miR-2808d 12 80
hsa-miR-3195 MIMAT0015079 Homo sapiens miR-3195 12 80
eca-miR-1180 MIMAT0013020 Equus caballus miR-1180 12 80
bta-miR-2316 MIMAT0011837 Bos taurus miR-2316 12 80
osa-miR1846d-3p MIMAT0007765 Oryza sativa miR1846d-3p 12 80
osa-miR531b MIMAT0007763 Oryza sativa miR531b 12 80
mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p 12 80
hsa-miR-1180-3p MIMAT0005825 Homo sapiens miR-1180-3p 12 80
sme-miR-746-5p MIMAT0012103 Schmidtea mediterranea miR-746-5p 12 80
osa-miR531a MIMAT0002887 Oryza sativa miR531a 12 80
dre-miR-181c-3p MIMAT0031980 Danio rerio miR-181c-3p 12 80
ath-miR169g-3p MIMAT0000912 Arabidopsis thaliana miR169g-3p 12 80
cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271 12 80
>bhv5-miR-B13 MIMAT0035710 Bovine herpesvirus miR-B13
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccggcg 7
|||||||
Sbjct: 1 tccggcg 7
>hsv2-miR-H24 MIMAT0014707 Herpes Simplex miR-H24
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccggcg 7
|||||||
Sbjct: 2 tccggcg 8
>bmo-miR-2748 MIMAT0012627 Bombyx mori miR-2748
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccggcg 7
|||||||
Sbjct: 1 tccggcg 7
>osa-miR1437a MIMAT0005988 Oryza sativa miR1437a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tccggcg 7
|||||||
Sbjct: 1 tccggcg 7
>sma-miR-8461-5p MIMAT0033639 Schistosoma mansoni miR-8461-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccggc 6
||||||
Sbjct: 8 tccggc 3
>ppc-miR-8360-5p MIMAT0033282 Pristionchus pacificus miR-8360-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccggcg 7
||||||
Sbjct: 1 ccggcg 6
>osa-miR531c MIMAT0031379 Oryza sativa miR531c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccggcg 7
||||||
Sbjct: 8 ccggcg 3
>prd-miR-50-3p MIMAT0030483 Panagrellus redivivus miR-50-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccggcg 7
||||||
Sbjct: 1 ccggcg 6
>mdo-miR-7306-3p MIMAT0028607 Monodelphis domestica miR-7306-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccggc 6
||||||
Sbjct: 1 tccggc 6
>mml-miR-1180-3p MIMAT0028265 Macaca mulatta miR-1180-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccggc 6
||||||
Sbjct: 3 tccggc 8
>hcmv-miR-US22-3p MIMAT0028166 Human cytomegalovirus miR-US22-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccggcg 7
||||||
Sbjct: 7 ccggcg 2
>gga-miR-6648-3p MIMAT0025747 Gallus gallus miR-6648-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccggc 6
||||||
Sbjct: 1 tccggc 6
>ppy-miR-4743 MIMAT0024366 Pongo pygmaeus miR-4743
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccggc 6
||||||
Sbjct: 8 tccggc 3
>mml-miR-4743 MIMAT0024327 Macaca mulatta miR-4743
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccggc 6
||||||
Sbjct: 8 tccggc 3
>ggo-miR-4743 MIMAT0024255 Gorilla gorilla miR-4743
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccggc 6
||||||
Sbjct: 8 tccggc 3
>ggo-miR-1180 MIMAT0024214 Gorilla gorilla miR-1180
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccggc 6
||||||
Sbjct: 3 tccggc 8
>ptr-miR-4743 MIMAT0024045 Pan troglodytes miR-4743
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccggc 6
||||||
Sbjct: 8 tccggc 3
>tur-miR-87-5p MIMAT0023066 Tetranychus urticae miR-87-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccggc 6
||||||
Sbjct: 8 tccggc 3
>dme-miR-4952-5p MIMAT0020166 Drosophila melanogaster
miR-4952-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccggc 6
||||||
Sbjct: 6 tccggc 1
>hsa-miR-4743-5p MIMAT0019874 Homo sapiens miR-4743-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccggc 6
||||||
Sbjct: 8 tccggc 3
>hsa-miR-4442 MIMAT0018960 Homo sapiens miR-4442
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccggc 6
||||||
Sbjct: 6 tccggc 1
>cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccggcg 7
||||||
Sbjct: 6 ccggcg 1
>ppy-miR-1180 MIMAT0016145 Pongo pygmaeus miR-1180
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccggc 6
||||||
Sbjct: 3 tccggc 8
>aly-miR397a-3p MIMAT0017562 Arabidopsis lyrata miR397a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccggcg 7
||||||
Sbjct: 1 ccggcg 6
>bmo-miR-2808d MIMAT0015386 Bombyx mori miR-2808d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccggcg 7
||||||
Sbjct: 1 ccggcg 6
>hsa-miR-3195 MIMAT0015079 Homo sapiens miR-3195
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccggcg 7
||||||
Sbjct: 8 ccggcg 3
>eca-miR-1180 MIMAT0013020 Equus caballus miR-1180
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccggc 6
||||||
Sbjct: 3 tccggc 8
>bta-miR-2316 MIMAT0011837 Bos taurus miR-2316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccggc 6
||||||
Sbjct: 3 tccggc 8
>osa-miR1846d-3p MIMAT0007765 Oryza sativa miR1846d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccggc 6
||||||
Sbjct: 3 tccggc 8
>osa-miR531b MIMAT0007763 Oryza sativa miR531b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccggcg 7
||||||
Sbjct: 8 ccggcg 3
>mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccggcg 7
||||||
Sbjct: 7 ccggcg 2
>hsa-miR-1180-3p MIMAT0005825 Homo sapiens miR-1180-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccggc 6
||||||
Sbjct: 3 tccggc 8
>sme-miR-746-5p MIMAT0012103 Schmidtea mediterranea miR-746-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tccggc 6
||||||
Sbjct: 6 tccggc 1
>osa-miR531a MIMAT0002887 Oryza sativa miR531a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccggcg 7
||||||
Sbjct: 8 ccggcg 3
>dre-miR-181c-3p MIMAT0031980 Danio rerio miR-181c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccggcg 7
||||||
Sbjct: 8 ccggcg 3
>ath-miR169g-3p MIMAT0000912 Arabidopsis thaliana miR169g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tccggc 6
||||||
Sbjct: 1 tccggc 6
>cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccggcg 7
||||||
Sbjct: 7 ccggcg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 51
Number of extensions: 47
Number of successful extensions: 37
Number of sequences better than 100.0: 37
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 37
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
