BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m01-4
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mcmv-miR-m01-4-5p MIMAT0005538 Mouse cytomegalovirus miR-m01-4-5p 16 6.9
oha-miR-202-5p MIMAT0036808 Ophiophagus hannah miR-202-5p 14 27
chi-miR-202-5p MIMAT0036048 Capra hircus miR-202-5p 14 27
cfa-miR-8908e MIMAT0034426 Canis familiaris miR-8908e 14 27
ssa-miR-202-3p MIMAT0032481 Salmo salar miR-202-3p 14 27
ipu-miR-202 MIMAT0029456 Ictalurus punctatus miR-202 14 27
mdo-miR-7300-3p MIMAT0028593 Monodelphis domestica miR-7300-3p 14 27
ppy-miR-202 MIMAT0024359 Pongo pygmaeus miR-202 14 27
hco-miR-5890b-5p MIMAT0023370 Haemonchus contortus miR-5890b-5p 14 27
gma-miR5762 MIMAT0023158 Glycine max miR5762 14 27
sha-miR-202 MIMAT0022780 Sarcophilus harrisii miR-202 14 27
ssc-miR-202-5p MIMAT0013948 Sus scrofa miR-202-5p 14 27
eca-miR-337-3p MIMAT0013135 Equus caballus miR-337-3p 14 27
rno-miR-202-5p MIMAT0012822 Rattus norvegicus miR-202-5p 14 27
mtr-miR2619a MIMAT0013339 Medicago truncatula miR2619a 14 27
dps-miR-2543b-5p MIMAT0012346 Drosophila pseudoobscura miR-2543b-5p 14 27
cfa-miR-202 MIMAT0009844 Canis familiaris miR-202 14 27
bta-miR-202 MIMAT0009259 Bos taurus miR-202 14 27
hsa-miR-202-5p MIMAT0002810 Homo sapiens miR-202-5p 14 27
dre-miR-202-5p MIMAT0003406 Danio rerio miR-202-5p 14 27
mmu-miR-202-5p MIMAT0004546 Mus musculus miR-202-5p 14 27
>mcmv-miR-m01-4-5p MIMAT0005538 Mouse cytomegalovirus
miR-m01-4-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcctatgc 8
||||||||
Sbjct: 1 tcctatgc 8
>oha-miR-202-5p MIMAT0036808 Ophiophagus hannah miR-202-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctatg 7
|||||||
Sbjct: 2 tcctatg 8
>chi-miR-202-5p MIMAT0036048 Capra hircus miR-202-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctatg 7
|||||||
Sbjct: 2 tcctatg 8
>cfa-miR-8908e MIMAT0034426 Canis familiaris miR-8908e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctatgc 8
|||||||
Sbjct: 8 cctatgc 2
>ssa-miR-202-3p MIMAT0032481 Salmo salar miR-202-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctatg 7
|||||||
Sbjct: 2 tcctatg 8
>ipu-miR-202 MIMAT0029456 Ictalurus punctatus miR-202
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctatg 7
|||||||
Sbjct: 2 tcctatg 8
>mdo-miR-7300-3p MIMAT0028593 Monodelphis domestica miR-7300-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctatg 7
|||||||
Sbjct: 8 tcctatg 2
>ppy-miR-202 MIMAT0024359 Pongo pygmaeus miR-202
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctatg 7
|||||||
Sbjct: 2 tcctatg 8
>hco-miR-5890b-5p MIMAT0023370 Haemonchus contortus miR-5890b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctatg 7
|||||||
Sbjct: 7 tcctatg 1
>gma-miR5762 MIMAT0023158 Glycine max miR5762
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctatg 7
|||||||
Sbjct: 8 tcctatg 2
>sha-miR-202 MIMAT0022780 Sarcophilus harrisii miR-202
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctatg 7
|||||||
Sbjct: 2 tcctatg 8
>ssc-miR-202-5p MIMAT0013948 Sus scrofa miR-202-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctatg 7
|||||||
Sbjct: 2 tcctatg 8
>eca-miR-337-3p MIMAT0013135 Equus caballus miR-337-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctatg 7
|||||||
Sbjct: 2 tcctatg 8
>rno-miR-202-5p MIMAT0012822 Rattus norvegicus miR-202-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctatg 7
|||||||
Sbjct: 2 tcctatg 8
>mtr-miR2619a MIMAT0013339 Medicago truncatula miR2619a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctatg 7
|||||||
Sbjct: 8 tcctatg 2
>dps-miR-2543b-5p MIMAT0012346 Drosophila pseudoobscura
miR-2543b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctatg 7
|||||||
Sbjct: 2 tcctatg 8
>cfa-miR-202 MIMAT0009844 Canis familiaris miR-202
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctatg 7
|||||||
Sbjct: 2 tcctatg 8
>bta-miR-202 MIMAT0009259 Bos taurus miR-202
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctatg 7
|||||||
Sbjct: 2 tcctatg 8
>hsa-miR-202-5p MIMAT0002810 Homo sapiens miR-202-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctatg 7
|||||||
Sbjct: 2 tcctatg 8
>dre-miR-202-5p MIMAT0003406 Danio rerio miR-202-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctatg 7
|||||||
Sbjct: 2 tcctatg 8
>mmu-miR-202-5p MIMAT0004546 Mus musculus miR-202-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctatg 7
|||||||
Sbjct: 2 tcctatg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 167
Number of extensions: 145
Number of successful extensions: 126
Number of sequences better than 100.0: 21
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 21
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
