BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m23-1-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppe-miR3627-5p MIMAT0031534 Prunus persica miR3627-5p 14 20
stu-miR3627-5p MIMAT0031245 Solanum tuberosum miR3627-5p 14 20
mdm-miR3627c MIMAT0026018 Malus domestica miR3627c 14 20
mdm-miR3627b MIMAT0026017 Malus domestica miR3627b 14 20
mdm-miR3627a MIMAT0026016 Malus domestica miR3627a 14 20
ptr-miR-3193 MIMAT0024062 Pan troglodytes miR-3193 14 20
cgr-miR-6091 MIMAT0024018 Cricetulus griseus miR-6091 14 20
mtr-miR5225c MIMAT0023143 Medicago truncatula miR5225c 14 20
mtr-miR5225b MIMAT0023142 Medicago truncatula miR5225b 14 20
sly-miR4376 MIMAT0022688 Solanum lycopersicum miR4376 14 20
mtr-miR5211 MIMAT0021144 Medicago truncatula miR5211 14 20
tca-miR-308-5p MIMAT0018706 Tribolium castaneum miR-308-5p 14 20
hsa-miR-3193 MIMAT0015077 Homo sapiens miR-3193 14 20
hsa-miR-1539 MIMAT0007401 Homo sapiens miR-1539 14 20
mcmv-miR-M23-1-3p MIMAT0005543 Mouse cytomegalovirus miR-M23-1-3p 14 20
bra-miR391-5p MIMAT0035842 Brassica rapa miR391-5p 12 80
dme-miR-9380-5p MIMAT0035223 Drosophila melanogaster miR-9380-5p 12 80
cfa-miR-8887 MIMAT0034391 Canis familiaris miR-8887 12 80
esi-miR8620 MIMAT0033955 Ectocarpus siliculosus miR8620 12 80
pxy-miR-8510a-8-3p MIMAT0033802 Plutella xylostella miR-8510a-8-3p 12 80
pxy-miR-8510b-3p MIMAT0033735 Plutella xylostella miR-8510b-3p 12 80
pxy-miR-8510a-3p MIMAT0033733 Plutella xylostella miR-8510a-3p 12 80
stu-miR4376-5p MIMAT0031274 Solanum tuberosum miR4376-5p 12 80
bdi-miR7733-3p MIMAT0030201 Brachypodium distachyon miR7733-3p 12 80
bma-miR-5879b MIMAT0026379 Brugia malayi miR-5879b 12 80
mdm-miR391 MIMAT0026019 Malus domestica miR391 12 80
hsa-miR-6886-5p MIMAT0027672 Homo sapiens miR-6886-5p 12 80
hsa-miR-6836-5p MIMAT0027574 Homo sapiens miR-6836-5p 12 80
hsa-miR-6747-3p MIMAT0027395 Homo sapiens miR-6747-3p 12 80
hsa-miR-6727-3p MIMAT0027356 Homo sapiens miR-6727-3p 12 80
mmu-miR-6392-3p MIMAT0025142 Mus musculus miR-6392-3p 12 80
mmu-miR-6370 MIMAT0025114 Mus musculus miR-6370 12 80
rno-miR-6332 MIMAT0025073 Rattus norvegicus miR-6332 12 80
hsa-miR-6165 MIMAT0024782 Homo sapiens miR-6165 12 80
mml-miR-873-5p MIMAT0024311 Macaca mulatta miR-873-5p 12 80
ggo-miR-873 MIMAT0024167 Gorilla gorilla miR-873 12 80
hsa-miR-6068 MIMAT0023693 Homo sapiens miR-6068 12 80
osa-miR5791 MIMAT0023258 Oryza sativa miR5791 12 80
tur-miR-252-3p MIMAT0023077 Tetranychus urticae miR-252-3p 12 80
ath-miR5631 MIMAT0022390 Arabidopsis thaliana miR5631 12 80
mmu-miR-3544-3p MIMAT0022354 Mus musculus miR-3544-3p 12 80
mtr-miR5247 MIMAT0021243 Medicago truncatula miR5247 12 80
hsa-miR-4520-5p MIMAT0019235 Homo sapiens miR-4520-5p 12 80
hsa-miR-4436a MIMAT0018952 Homo sapiens miR-4436a 12 80
gma-miR4376-5p MIMAT0018280 Glycine max miR4376-5p 12 80
ame-miR-3770 MIMAT0018545 Apis mellifera miR-3770 12 80
sja-miR-3480-5p MIMAT0016280 Schistosoma japonicum miR-3480-5p 12 80
ppy-miR-873 MIMAT0016111 Pongo pygmaeus miR-873 12 80
aly-miR391-5p MIMAT0017537 Arabidopsis lyrata miR391-5p 12 80
hsa-miR-3074-5p MIMAT0019208 Homo sapiens miR-3074-5p 12 80
mmu-miR-3074-5p MIMAT0014856 Mus musculus miR-3074-5p 12 80
tgu-miR-1677-5p MIMAT0014452 Taeniopygia guttata miR-1677-5p 12 80
eca-miR-873 MIMAT0013120 Equus caballus miR-873 12 80
dsi-miR-252-3p MIMAT0012466 Drosophila simulans miR-252-3p 12 80
dps-miR-252-3p MIMAT0012262 Drosophila pseudoobscura miR-252-3p 12 80
cbr-miR-35d-5p MIMAT0011469 Caenorhabditis briggsae miR-35d-5p 12 80
gga-miR-2129 MIMAT0011205 Gallus gallus miR-2129 12 80
hsa-miR-1976 MIMAT0009451 Homo sapiens miR-1976 12 80
bta-miR-873 MIMAT0009377 Bos taurus miR-873 12 80
ptr-miR-873 MIMAT0008324 Pan troglodytes miR-873 12 80
hsa-miR-1909-3p MIMAT0007883 Homo sapiens miR-1909-3p 12 80
gga-miR-1806 MIMAT0007724 Gallus gallus miR-1806 12 80
gga-miR-1677-5p MIMAT0007562 Gallus gallus miR-1677-5p 12 80
gga-miR-1649-5p MIMAT0007526 Gallus gallus miR-1649-5p 12 80
tae-miR1124 MIMAT0005359 Triticum aestivum miR1124 12 80
rno-miR-873-5p MIMAT0005339 Rattus norvegicus miR-873-5p 12 80
dme-miR-252-3p MIMAT0020896 Drosophila melanogaster miR-252-3p 12 80
hsa-miR-873-5p MIMAT0004953 Homo sapiens miR-873-5p 12 80
mmu-miR-873a-5p MIMAT0004936 Mus musculus miR-873a-5p 12 80
ppt-miR1219d MIMAT0003911 Physcomitrella patens miR1219d 12 80
ppt-miR1219c MIMAT0003910 Physcomitrella patens miR1219c 12 80
ppt-miR1219b MIMAT0003909 Physcomitrella patens miR1219b 12 80
ppt-miR1219a MIMAT0003908 Physcomitrella patens miR1219a 12 80
mmu-miR-688 MIMAT0003467 Mus musculus miR-688 12 80
ath-miR391-5p MIMAT0000933 Arabidopsis thaliana miR391-5p 12 80
>ppe-miR3627-5p MIMAT0031534 Prunus persica miR3627-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgcg 7
|||||||
Sbjct: 8 tcctgcg 2
>stu-miR3627-5p MIMAT0031245 Solanum tuberosum miR3627-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgcg 7
|||||||
Sbjct: 8 tcctgcg 2
>mdm-miR3627c MIMAT0026018 Malus domestica miR3627c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgcg 7
|||||||
Sbjct: 8 tcctgcg 2
>mdm-miR3627b MIMAT0026017 Malus domestica miR3627b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgcg 7
|||||||
Sbjct: 8 tcctgcg 2
>mdm-miR3627a MIMAT0026016 Malus domestica miR3627a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgcg 7
|||||||
Sbjct: 8 tcctgcg 2
>ptr-miR-3193 MIMAT0024062 Pan troglodytes miR-3193
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgcg 7
|||||||
Sbjct: 2 tcctgcg 8
>cgr-miR-6091 MIMAT0024018 Cricetulus griseus miR-6091
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgcg 7
|||||||
Sbjct: 1 tcctgcg 7
>mtr-miR5225c MIMAT0023143 Medicago truncatula miR5225c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgcg 7
|||||||
Sbjct: 8 tcctgcg 2
>mtr-miR5225b MIMAT0023142 Medicago truncatula miR5225b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgcg 7
|||||||
Sbjct: 8 tcctgcg 2
>sly-miR4376 MIMAT0022688 Solanum lycopersicum miR4376
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgcg 7
|||||||
Sbjct: 8 tcctgcg 2
>mtr-miR5211 MIMAT0021144 Medicago truncatula miR5211
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgcg 7
|||||||
Sbjct: 8 tcctgcg 2
>tca-miR-308-5p MIMAT0018706 Tribolium castaneum miR-308-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgcg 7
|||||||
Sbjct: 7 tcctgcg 1
>hsa-miR-3193 MIMAT0015077 Homo sapiens miR-3193
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgcg 7
|||||||
Sbjct: 1 tcctgcg 7
>hsa-miR-1539 MIMAT0007401 Homo sapiens miR-1539
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgcg 7
|||||||
Sbjct: 1 tcctgcg 7
>mcmv-miR-M23-1-3p MIMAT0005543 Mouse cytomegalovirus
miR-M23-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgcg 7
|||||||
Sbjct: 2 tcctgcg 8
>bra-miR391-5p MIMAT0035842 Brassica rapa miR391-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 8 cctgcg 3
>dme-miR-9380-5p MIMAT0035223 Drosophila melanogaster
miR-9380-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 3 tcctgc 8
>cfa-miR-8887 MIMAT0034391 Canis familiaris miR-8887
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 1 tcctgc 6
>esi-miR8620 MIMAT0033955 Ectocarpus siliculosus miR8620
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 1 tcctgc 6
>pxy-miR-8510a-8-3p MIMAT0033802 Plutella xylostella
miR-8510a-8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 7 cctgcg 2
>pxy-miR-8510b-3p MIMAT0033735 Plutella xylostella miR-8510b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 7 cctgcg 2
>pxy-miR-8510a-3p MIMAT0033733 Plutella xylostella miR-8510a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 7 cctgcg 2
>stu-miR4376-5p MIMAT0031274 Solanum tuberosum miR4376-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 8 cctgcg 3
>bdi-miR7733-3p MIMAT0030201 Brachypodium distachyon miR7733-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgcg 7
||||||
Sbjct: 1 cctgcg 6
>bma-miR-5879b MIMAT0026379 Brugia malayi miR-5879b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 6 tcctgc 1
>mdm-miR391 MIMAT0026019 Malus domestica miR391
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 8 cctgcg 3
>hsa-miR-6886-5p MIMAT0027672 Homo sapiens miR-6886-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 8 cctgcg 3
>hsa-miR-6836-5p MIMAT0027574 Homo sapiens miR-6836-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 6 cctgcg 1
>hsa-miR-6747-3p MIMAT0027395 Homo sapiens miR-6747-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 1 tcctgc 6
>hsa-miR-6727-3p MIMAT0027356 Homo sapiens miR-6727-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 1 tcctgc 6
>mmu-miR-6392-3p MIMAT0025142 Mus musculus miR-6392-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 8 cctgcg 3
>mmu-miR-6370 MIMAT0025114 Mus musculus miR-6370
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 6 tcctgc 1
>rno-miR-6332 MIMAT0025073 Rattus norvegicus miR-6332
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 6 cctgcg 1
>hsa-miR-6165 MIMAT0024782 Homo sapiens miR-6165
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 8 tcctgc 3
>mml-miR-873-5p MIMAT0024311 Macaca mulatta miR-873-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 6 tcctgc 1
>ggo-miR-873 MIMAT0024167 Gorilla gorilla miR-873
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 6 tcctgc 1
>hsa-miR-6068 MIMAT0023693 Homo sapiens miR-6068
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgcg 7
||||||
Sbjct: 1 cctgcg 6
>osa-miR5791 MIMAT0023258 Oryza sativa miR5791
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 8 tcctgc 3
>tur-miR-252-3p MIMAT0023077 Tetranychus urticae miR-252-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 1 tcctgc 6
>ath-miR5631 MIMAT0022390 Arabidopsis thaliana miR5631
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 8 tcctgc 3
>mmu-miR-3544-3p MIMAT0022354 Mus musculus miR-3544-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 3 tcctgc 8
>mtr-miR5247 MIMAT0021243 Medicago truncatula miR5247
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 6 tcctgc 1
>hsa-miR-4520-5p MIMAT0019235 Homo sapiens miR-4520-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgcg 7
||||||
Sbjct: 1 cctgcg 6
>hsa-miR-4436a MIMAT0018952 Homo sapiens miR-4436a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 6 tcctgc 1
>gma-miR4376-5p MIMAT0018280 Glycine max miR4376-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 8 cctgcg 3
>ame-miR-3770 MIMAT0018545 Apis mellifera miR-3770
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 3 tcctgc 8
>sja-miR-3480-5p MIMAT0016280 Schistosoma japonicum miR-3480-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 6 tcctgc 1
>ppy-miR-873 MIMAT0016111 Pongo pygmaeus miR-873
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 6 tcctgc 1
>aly-miR391-5p MIMAT0017537 Arabidopsis lyrata miR391-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 8 cctgcg 3
>hsa-miR-3074-5p MIMAT0019208 Homo sapiens miR-3074-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 3 tcctgc 8
>mmu-miR-3074-5p MIMAT0014856 Mus musculus miR-3074-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 3 tcctgc 8
>tgu-miR-1677-5p MIMAT0014452 Taeniopygia guttata miR-1677-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 1 tcctgc 6
>eca-miR-873 MIMAT0013120 Equus caballus miR-873
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 6 tcctgc 1
>dsi-miR-252-3p MIMAT0012466 Drosophila simulans miR-252-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 1 tcctgc 6
>dps-miR-252-3p MIMAT0012262 Drosophila pseudoobscura miR-252-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 1 tcctgc 6
>cbr-miR-35d-5p MIMAT0011469 Caenorhabditis briggsae miR-35d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 6 cctgcg 1
>gga-miR-2129 MIMAT0011205 Gallus gallus miR-2129
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 8 tcctgc 3
>hsa-miR-1976 MIMAT0009451 Homo sapiens miR-1976
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 3 tcctgc 8
>bta-miR-873 MIMAT0009377 Bos taurus miR-873
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 6 tcctgc 1
>ptr-miR-873 MIMAT0008324 Pan troglodytes miR-873
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 6 tcctgc 1
>hsa-miR-1909-3p MIMAT0007883 Homo sapiens miR-1909-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 6 cctgcg 1
>gga-miR-1806 MIMAT0007724 Gallus gallus miR-1806
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 8 tcctgc 3
>gga-miR-1677-5p MIMAT0007562 Gallus gallus miR-1677-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 1 tcctgc 6
>gga-miR-1649-5p MIMAT0007526 Gallus gallus miR-1649-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 1 tcctgc 6
>tae-miR1124 MIMAT0005359 Triticum aestivum miR1124
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 6 tcctgc 1
>rno-miR-873-5p MIMAT0005339 Rattus norvegicus miR-873-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 6 tcctgc 1
>dme-miR-252-3p MIMAT0020896 Drosophila melanogaster miR-252-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 1 tcctgc 6
>hsa-miR-873-5p MIMAT0004953 Homo sapiens miR-873-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 6 tcctgc 1
>mmu-miR-873a-5p MIMAT0004936 Mus musculus miR-873a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctgc 6
||||||
Sbjct: 6 tcctgc 1
>ppt-miR1219d MIMAT0003911 Physcomitrella patens miR1219d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 3 tcctgc 8
>ppt-miR1219c MIMAT0003910 Physcomitrella patens miR1219c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 3 tcctgc 8
>ppt-miR1219b MIMAT0003909 Physcomitrella patens miR1219b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 3 tcctgc 8
>ppt-miR1219a MIMAT0003908 Physcomitrella patens miR1219a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctgc 6
||||||
Sbjct: 3 tcctgc 8
>mmu-miR-688 MIMAT0003467 Mus musculus miR-688
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 7 cctgcg 2
>ath-miR391-5p MIMAT0000933 Arabidopsis thaliana miR391-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcg 7
||||||
Sbjct: 8 cctgcg 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 109
Number of extensions: 94
Number of successful extensions: 75
Number of sequences better than 100.0: 75
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 75
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
