BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart12
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ebv-miR-BART12 MIMAT0003423 Epstein Barr miR-BART12 16 6.9
ata-miR396b-5p MIMAT0037182 Aegilops tauschii miR396b-5p 14 27
ata-miR396d-5p MIMAT0037160 Aegilops tauschii miR396d-5p 14 27
ata-miR396a-5p MIMAT0037090 Aegilops tauschii miR396a-5p 14 27
oha-miR-5470 MIMAT0036941 Ophiophagus hannah miR-5470 14 27
chi-miR-543-5p MIMAT0036274 Capra hircus miR-543-5p 14 27
chi-miR-140-3p MIMAT0035961 Capra hircus miR-140-3p 14 27
bra-miR9569-3p MIMAT0035700 Brassica rapa miR9569-3p 14 27
efu-miR-9190 MIMAT0034770 Eptesicus fuscus miR-9190 14 27
atr-miR396a MIMAT0033938 Amborella trichopoda miR396a 14 27
atr-miR8585 MIMAT0033871 Amborella trichopoda miR8585 14 27
ppe-miR8133-5p MIMAT0031563 Prunus persica miR8133-5p 14 27
mmu-miR-7682-3p MIMAT0029885 Mus musculus miR-7682-3p 14 27
cbn-miR-249 MIMAT0029766 Caenorhabditis brenneri miR-249 14 27
ipu-miR-140 MIMAT0029417 Ictalurus punctatus miR-140 14 27
gga-miR-7442-5p MIMAT0029038 Gallus gallus miR-7442-5p 14 27
mmu-miR-7053-3p MIMAT0028011 Mus musculus miR-7053-3p 14 27
gga-miR-6612-5p MIMAT0025707 Gallus gallus miR-6612-5p 14 27
bta-miR-6526 MIMAT0025556 Bos taurus miR-6526 14 27
pol-miR-140-3p MIMAT0025435 Paralichthys olivaceus miR-140-3p 14 27
ggo-miR-140 MIMAT0024081 Gorilla gorilla miR-140 14 27
cgr-miR-140-3p MIMAT0023768 Cricetulus griseus miR-140-3p 14 27
sha-miR-140 MIMAT0022778 Sarcophilus harrisii miR-140 14 27
ola-miR-140-3p MIMAT0022553 Oryzias latipes miR-140-3p 14 27
cin-miR-5606-3p MIMAT0022340 Ciona intestinalis miR-5606-3p 14 27
aca-miR-5470 MIMAT0022103 Anolis carolinensis miR-5470 14 27
bdi-miR396b-5p MIMAT0020700 Brachypodium distachyon miR396b-5p 14 27
bdi-miR396a-5p MIMAT0020686 Brachypodium distachyon miR396a-5p 14 27
hsa-miR-4700-3p MIMAT0019797 Homo sapiens miR-4700-3p 14 27
oar-miR-543-5p MIMAT0019271 Ovis aries miR-543-5p 14 27
far-miR396 MIMAT0018369 Festuca arundinacea miR396 14 27
tca-miR-3839-5p MIMAT0018722 Tribolium castaneum miR-3839-5p 14 27
rno-miR-3557-3p MIMAT0017820 Rattus norvegicus miR-3557-3p 14 27
bmo-miR-3264 MIMAT0015448 Bombyx mori miR-3264 14 27
osa-miR396d MIMAT0013835 Oryza sativa miR396d 14 27
osa-miR396h MIMAT0013834 Oryza sativa miR396h 14 27
osa-miR396g MIMAT0013833 Oryza sativa miR396g 14 27
crm-miR-249 MIMAT0011529 Caenorhabditis remanei miR-249 14 27
cfa-miR-140 MIMAT0006689 Canis familiaris miR-140 14 27
mml-miR-134-3p MIMAT0026819 Macaca mulatta miR-134-3p 14 27
gga-miR-1739 MIMAT0007642 Gallus gallus miR-1739 14 27
gga-miR-1459 MIMAT0007337 Gallus gallus miR-1459 14 27
gga-miR-1458 MIMAT0007336 Gallus gallus miR-1458 14 27
ath-miR836 MIMAT0004257 Arabidopsis thaliana miR836 14 27
osa-miR396e-5p MIMAT0001601 Oryza sativa miR396e-5p 14 27
cbr-miR-249 MIMAT0001305 Caenorhabditis briggsae miR-249 14 27
gga-miR-140-3p MIMAT0003722 Gallus gallus miR-140-3p 14 27
hsa-miR-134-3p MIMAT0026481 Homo sapiens miR-134-3p 14 27
cel-miR-249-3p MIMAT0000305 Caenorhabditis elegans miR-249-3p 14 27
>ebv-miR-BART12 MIMAT0003423 Epstein Barr miR-BART12
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcctgtgg 8
||||||||
Sbjct: 1 tcctgtgg 8
>ata-miR396b-5p MIMAT0037182 Aegilops tauschii miR396b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>ata-miR396d-5p MIMAT0037160 Aegilops tauschii miR396d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>ata-miR396a-5p MIMAT0037090 Aegilops tauschii miR396a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>oha-miR-5470 MIMAT0036941 Ophiophagus hannah miR-5470
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgtg 7
|||||||
Sbjct: 7 tcctgtg 1
>chi-miR-543-5p MIMAT0036274 Capra hircus miR-543-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctgtgg 8
|||||||
Sbjct: 2 cctgtgg 8
>chi-miR-140-3p MIMAT0035961 Capra hircus miR-140-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>bra-miR9569-3p MIMAT0035700 Brassica rapa miR9569-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgtg 7
|||||||
Sbjct: 8 tcctgtg 2
>efu-miR-9190 MIMAT0034770 Eptesicus fuscus miR-9190
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgtg 7
|||||||
Sbjct: 2 tcctgtg 8
>atr-miR396a MIMAT0033938 Amborella trichopoda miR396a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>atr-miR8585 MIMAT0033871 Amborella trichopoda miR8585
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgtg 7
|||||||
Sbjct: 8 tcctgtg 2
>ppe-miR8133-5p MIMAT0031563 Prunus persica miR8133-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgtg 7
|||||||
Sbjct: 1 tcctgtg 7
>mmu-miR-7682-3p MIMAT0029885 Mus musculus miR-7682-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctgtgg 8
|||||||
Sbjct: 1 cctgtgg 7
>cbn-miR-249 MIMAT0029766 Caenorhabditis brenneri miR-249
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgtg 7
|||||||
Sbjct: 8 tcctgtg 2
>ipu-miR-140 MIMAT0029417 Ictalurus punctatus miR-140
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>gga-miR-7442-5p MIMAT0029038 Gallus gallus miR-7442-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgtg 7
|||||||
Sbjct: 7 tcctgtg 1
>mmu-miR-7053-3p MIMAT0028011 Mus musculus miR-7053-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgtg 7
|||||||
Sbjct: 2 tcctgtg 8
>gga-miR-6612-5p MIMAT0025707 Gallus gallus miR-6612-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>bta-miR-6526 MIMAT0025556 Bos taurus miR-6526
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgtg 7
|||||||
Sbjct: 1 tcctgtg 7
>pol-miR-140-3p MIMAT0025435 Paralichthys olivaceus miR-140-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>ggo-miR-140 MIMAT0024081 Gorilla gorilla miR-140
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>cgr-miR-140-3p MIMAT0023768 Cricetulus griseus miR-140-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>sha-miR-140 MIMAT0022778 Sarcophilus harrisii miR-140
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>ola-miR-140-3p MIMAT0022553 Oryzias latipes miR-140-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>cin-miR-5606-3p MIMAT0022340 Ciona intestinalis miR-5606-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgtg 7
|||||||
Sbjct: 2 tcctgtg 8
>aca-miR-5470 MIMAT0022103 Anolis carolinensis miR-5470
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgtg 7
|||||||
Sbjct: 7 tcctgtg 1
>bdi-miR396b-5p MIMAT0020700 Brachypodium distachyon miR396b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>bdi-miR396a-5p MIMAT0020686 Brachypodium distachyon miR396a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>hsa-miR-4700-3p MIMAT0019797 Homo sapiens miR-4700-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgtg 7
|||||||
Sbjct: 7 tcctgtg 1
>oar-miR-543-5p MIMAT0019271 Ovis aries miR-543-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctgtgg 8
|||||||
Sbjct: 2 cctgtgg 8
>far-miR396 MIMAT0018369 Festuca arundinacea miR396
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>tca-miR-3839-5p MIMAT0018722 Tribolium castaneum miR-3839-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgtg 7
|||||||
Sbjct: 7 tcctgtg 1
>rno-miR-3557-3p MIMAT0017820 Rattus norvegicus miR-3557-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgtg 7
|||||||
Sbjct: 8 tcctgtg 2
>bmo-miR-3264 MIMAT0015448 Bombyx mori miR-3264
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgtg 7
|||||||
Sbjct: 8 tcctgtg 2
>osa-miR396d MIMAT0013835 Oryza sativa miR396d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>osa-miR396h MIMAT0013834 Oryza sativa miR396h
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>osa-miR396g MIMAT0013833 Oryza sativa miR396g
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>crm-miR-249 MIMAT0011529 Caenorhabditis remanei miR-249
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgtg 7
|||||||
Sbjct: 8 tcctgtg 2
>cfa-miR-140 MIMAT0006689 Canis familiaris miR-140
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>mml-miR-134-3p MIMAT0026819 Macaca mulatta miR-134-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctgtgg 8
|||||||
Sbjct: 1 cctgtgg 7
>gga-miR-1739 MIMAT0007642 Gallus gallus miR-1739
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgtg 7
|||||||
Sbjct: 7 tcctgtg 1
>gga-miR-1459 MIMAT0007337 Gallus gallus miR-1459
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgtg 7
|||||||
Sbjct: 2 tcctgtg 8
>gga-miR-1458 MIMAT0007336 Gallus gallus miR-1458
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgtg 7
|||||||
Sbjct: 2 tcctgtg 8
>ath-miR836 MIMAT0004257 Arabidopsis thaliana miR836
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgtg 7
|||||||
Sbjct: 1 tcctgtg 7
>osa-miR396e-5p MIMAT0001601 Oryza sativa miR396e-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 8 cctgtgg 2
>cbr-miR-249 MIMAT0001305 Caenorhabditis briggsae miR-249
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgtg 7
|||||||
Sbjct: 8 tcctgtg 2
>gga-miR-140-3p MIMAT0003722 Gallus gallus miR-140-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctgtgg 8
|||||||
Sbjct: 7 cctgtgg 1
>hsa-miR-134-3p MIMAT0026481 Homo sapiens miR-134-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctgtgg 8
|||||||
Sbjct: 1 cctgtgg 7
>cel-miR-249-3p MIMAT0000305 Caenorhabditis elegans miR-249-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgtg 7
|||||||
Sbjct: 8 tcctgtg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 362
Number of extensions: 312
Number of successful extensions: 291
Number of sequences better than 100.0: 49
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 49
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
